BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00054383
         (463 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_043932.1| hypothetical protein [Strawberry vein banding v...   115   8e-24
gb|AAU06128.1| capsid protein [Strawberry vein banding virus]         115   8e-24
gb|AAU06126.1| capsid protein [Strawberry vein banding virus]         115   8e-24
gb|AAU06127.1| capsid protein [Strawberry vein banding virus]         115   8e-24
emb|CAS03263.1| capsid protein [Strawberry vein banding virus]        111   9e-23
emb|CCG14715.1| coat protein [Strawberry vein banding virus]          108   6e-22
gb|AAW63125.1| coat protein [Strawberry vein banding virus]            62   8e-08

>ref|NP_043932.1| hypothetical protein [Strawberry vein banding virus]
           gi|1360612|emb|CAA65969.1| ORF IV [Strawberry vein
           banding virus]
          Length = 474

 Score =  115 bits (287), Expect = 8e-24
 Identities = 55/154 (35%), Positives = 79/154 (51%)
 Frame = -1

Query: 463 RKVPYVGAKVLPEYQAGGELNKLSLMFAKNLIKTYMETYCRDIKIREQLKSVDLCCPEFM 284
           RK+P+VG +VL EY     + K SL +A NLIK YME  C+ +KI+++++  ++CCP+F 
Sbjct: 260 RKIPFVGMEVLEEYSKQDSITKGSLGYAHNLIKAYMEKKCKSLKIKKEIRR-NMCCPKFS 318

Query: 283 GPEAIYGCDDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDQQEAQSP 104
            PE  YGC  I                                        R + + +  
Sbjct: 319 SPETQYGCKPISHKKAKKQKYKQYYKKKYRLRKPKRWTNSRRKYSGRKLFRRKRDQKEET 378

Query: 103 NDPKEQDKKKFCPQSKPTCKCWICNEIGHYERDC 2
           +    ++KKKFCPQ K TC+CWICNEIGH+ +DC
Sbjct: 379 SQQSPEEKKKFCPQGKTTCRCWICNEIGHFAKDC 412


>gb|AAU06128.1| capsid protein [Strawberry vein banding virus]
          Length = 468

 Score =  115 bits (287), Expect = 8e-24
 Identities = 55/154 (35%), Positives = 79/154 (51%)
 Frame = -1

Query: 463 RKVPYVGAKVLPEYQAGGELNKLSLMFAKNLIKTYMETYCRDIKIREQLKSVDLCCPEFM 284
           RK+P+VG +VL EY     + K SL +A NLIK YME  C+ +KI+++++  ++CCP+F 
Sbjct: 260 RKIPFVGMEVLEEYSKQDSITKGSLGYAHNLIKAYMEKKCKSLKIKKEIRR-NMCCPKFS 318

Query: 283 GPEAIYGCDDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDQQEAQSP 104
            PE  YGC  I                                        R + + +  
Sbjct: 319 SPETQYGCKPISHKKAKKKKYKQYYKKKYRLRKPKRWTNSRRKYSGRKLFRRKRDQKEET 378

Query: 103 NDPKEQDKKKFCPQSKPTCKCWICNEIGHYERDC 2
           +    ++KKKFCPQ K TC+CWICNEIGH+ +DC
Sbjct: 379 SQQSPEEKKKFCPQGKTTCRCWICNEIGHFAKDC 412


>gb|AAU06126.1| capsid protein [Strawberry vein banding virus]
          Length = 468

 Score =  115 bits (287), Expect = 8e-24
 Identities = 55/154 (35%), Positives = 79/154 (51%)
 Frame = -1

Query: 463 RKVPYVGAKVLPEYQAGGELNKLSLMFAKNLIKTYMETYCRDIKIREQLKSVDLCCPEFM 284
           RK+P+VG +VL EY     + K SL +A NLIK YME  C+ +KI+++++  ++CCP+F 
Sbjct: 260 RKIPFVGMEVLEEYSKQDSITKGSLGYAHNLIKAYMEKKCKSLKIKKEIRR-NMCCPKFS 318

Query: 283 GPEAIYGCDDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDQQEAQSP 104
            PE  YGC  I                                        R + + +  
Sbjct: 319 SPETQYGCKPISHKKAKKKKYKQYYKKKYRLRKPKRWTNSRRKYSGRKLFRRKRDQKEET 378

Query: 103 NDPKEQDKKKFCPQSKPTCKCWICNEIGHYERDC 2
           +    ++KKKFCPQ K TC+CWICNEIGH+ +DC
Sbjct: 379 SQQSPEEKKKFCPQGKTTCRCWICNEIGHFAKDC 412


>gb|AAU06127.1| capsid protein [Strawberry vein banding virus]
          Length = 468

 Score =  115 bits (287), Expect = 8e-24
 Identities = 55/154 (35%), Positives = 79/154 (51%)
 Frame = -1

Query: 463 RKVPYVGAKVLPEYQAGGELNKLSLMFAKNLIKTYMETYCRDIKIREQLKSVDLCCPEFM 284
           RK+P+VG +VL EY     + K SL +A NLIK YME  C+ +KI+++++  ++CCP+F 
Sbjct: 260 RKIPFVGMEVLEEYSKQDSITKGSLGYAHNLIKAYMEKKCKSLKIKKEIRR-NMCCPKFS 318

Query: 283 GPEAIYGCDDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDQQEAQSP 104
            PE  YGC  I                                        R + + +  
Sbjct: 319 SPETQYGCKPISHKKAKKKKYKQYYKKKYRLRKPKRWTNSRRKYSGRKLFRRKRDQKEET 378

Query: 103 NDPKEQDKKKFCPQSKPTCKCWICNEIGHYERDC 2
           +    ++KKKFCPQ K TC+CWICNEIGH+ +DC
Sbjct: 379 SQQSPEEKKKFCPQGKTTCRCWICNEIGHFAKDC 412


>emb|CAS03263.1| capsid protein [Strawberry vein banding virus]
          Length = 468

 Score =  111 bits (278), Expect = 9e-23
 Identities = 56/154 (36%), Positives = 79/154 (51%)
 Frame = -1

Query: 463 RKVPYVGAKVLPEYQAGGELNKLSLMFAKNLIKTYMETYCRDIKIREQLKSVDLCCPEFM 284
           RK+P+VG +VL EY     + K SL +A NLIK+YME  C+ +KI+++++  ++CCP+F 
Sbjct: 256 RKIPFVGMEVLEEYSKQDNITKGSLGYAHNLIKSYMEKKCKSLKIKKEIRR-NMCCPKFS 314

Query: 283 GPEAIYGCDDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDQQEAQSP 104
            PE  YGC  I                                        R + + +  
Sbjct: 315 SPETQYGCKPISHKKAKKKKYKQYYKRKYRLRKPKRWTNSRRKYSGRKLFRRKRNQKEET 374

Query: 103 NDPKEQDKKKFCPQSKPTCKCWICNEIGHYERDC 2
             P E  KKKFCPQ K +C+CWICNEIGH+ +DC
Sbjct: 375 AQPSE-GKKKFCPQGKTSCRCWICNEIGHFAKDC 407


>emb|CCG14715.1| coat protein [Strawberry vein banding virus]
          Length = 471

 Score =  108 bits (271), Expect = 6e-22
 Identities = 55/154 (35%), Positives = 78/154 (50%)
 Frame = -1

Query: 463 RKVPYVGAKVLPEYQAGGELNKLSLMFAKNLIKTYMETYCRDIKIREQLKSVDLCCPEFM 284
           RK+P+VG +VL EY     + K SL +A NLIK+YME  C+ +KI+++++  ++CCP+  
Sbjct: 259 RKIPFVGMEVLEEYSKQDNITKGSLGYAHNLIKSYMEKKCKSLKIKKEIRR-NMCCPKVS 317

Query: 283 GPEAIYGCDDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDQQEAQSP 104
            PE  YGC  I                                        R + + +  
Sbjct: 318 SPETQYGCKPISHKKAKKKKYKQYYKRKYRLRKPKRWTNSRRKYSGRKLFRRKRDQKEET 377

Query: 103 NDPKEQDKKKFCPQSKPTCKCWICNEIGHYERDC 2
             P E  KKKFCPQ K +C+CWICNEIGH+ +DC
Sbjct: 378 AQPSE-GKKKFCPQGKTSCRCWICNEIGHFAKDC 410


>gb|AAW63125.1| coat protein [Strawberry vein banding virus]
          Length = 191

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 27/59 (45%), Positives = 43/59 (72%)
 Frame = -1

Query: 463 RKVPYVGAKVLPEYQAGGELNKLSLMFAKNLIKTYMETYCRDIKIREQLKSVDLCCPEF 287
           RK+P+VG +VL EY     + K SL +A NLIK+YME  C+ +KI+++++  ++CCP+F
Sbjct: 132 RKIPFVGMEVLEEYSKQDNITKGSLGYAHNLIKSYMEKKCKSLKIKKEIRR-NMCCPKF 189