BLASTX nr result
ID: Cocculus23_contig00052773
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00052773
(286 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat... 86 4e-15
emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera] 86 4e-15
ref|XP_002534039.1| pentatricopeptide repeat-containing protein,... 82 8e-14
ref|XP_006484517.1| PREDICTED: putative pentatricopeptide repeat... 74 3e-11
ref|XP_007142773.1| hypothetical protein PHAVU_007G015700g [Phas... 74 3e-11
ref|XP_003592708.1| Pentatricopeptide repeat protein-like protei... 72 8e-11
ref|XP_007043262.1| Tetratricopeptide repeat (TPR)-like superfam... 72 1e-10
ref|XP_004497230.1| PREDICTED: uncharacterized protein LOC101514... 72 1e-10
ref|XP_006605847.1| PREDICTED: putative pentatricopeptide repeat... 71 1e-10
ref|XP_006437612.1| hypothetical protein CICLE_v10030697mg [Citr... 70 3e-10
ref|XP_006836716.1| hypothetical protein AMTR_s00088p00119450 [A... 70 4e-10
ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat... 65 1e-08
ref|XP_006399321.1| hypothetical protein EUTSA_v10015588mg [Eutr... 64 2e-08
ref|XP_006286449.1| hypothetical protein CARUB_v10000227mg [Caps... 62 8e-08
ref|XP_004237169.1| PREDICTED: putative pentatricopeptide repeat... 61 1e-07
ref|NP_196448.2| pentatricopeptide repeat-containing protein [Ar... 60 4e-07
ref|XP_006359301.1| PREDICTED: putative pentatricopeptide repeat... 59 5e-07
>ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial [Vitis vinifera]
gi|296085293|emb|CBI29025.3| unnamed protein product
[Vitis vinifera]
Length = 854
Score = 86.3 bits (212), Expect = 4e-15
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3
Query: 12 PDASVYVTLISSFVSNGNLLIAFEILREMALKLSFPGPSDKNLPILMDALRTLSEDGITS 191
PD VYV LI+SF+SN N +AFEIL+EM K FP P DKN L DA+ L+ED TS
Sbjct: 769 PDTIVYVALITSFISNKNPTLAFEILKEMVAKGKFPDPLDKNDLPLRDAILELAEDASTS 828
Query: 192 SDVKNLIADGLLPAICSASD 251
S+VKNLIA+G +P I SD
Sbjct: 829 SNVKNLIAEGRIPTIVCLSD 848
>emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
Length = 814
Score = 86.3 bits (212), Expect = 4e-15
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3
Query: 12 PDASVYVTLISSFVSNGNLLIAFEILREMALKLSFPGPSDKNLPILMDALRTLSEDGITS 191
PD VYV LI+SF+SN N +AFEIL+EM K FP P DKN L DA+ L+ED TS
Sbjct: 729 PDTIVYVALITSFISNKNPTLAFEILKEMVAKGKFPDPLDKNDLPLRDAILELAEDASTS 788
Query: 192 SDVKNLIADGLLPAICSASD 251
S+VKNLIA+G +P I SD
Sbjct: 789 SNVKNLIAEGRIPTIVCLSD 808
>ref|XP_002534039.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223525946|gb|EEF28343.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 634
Score = 82.0 bits (201), Expect = 8e-14
Identities = 41/78 (52%), Positives = 56/78 (71%)
Frame = +3
Query: 3 EMEPDASVYVTLISSFVSNGNLLIAFEILREMALKLSFPGPSDKNLPILMDALRTLSEDG 182
EMEPD VY++L+S+FV+ N +AFEIL++M + +FP P DKN I+ DA+ LS+D
Sbjct: 541 EMEPDTYVYISLVSAFVNISNFPMAFEILKKMVDRRNFPDPLDKNCIIIRDAILKLSKDA 600
Query: 183 ITSSDVKNLIADGLLPAI 236
TSS VK+LIA G +P I
Sbjct: 601 RTSSSVKSLIASGSIPTI 618
>ref|XP_006484517.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like [Citrus sinensis]
Length = 845
Score = 73.6 bits (179), Expect = 3e-11
Identities = 41/82 (50%), Positives = 56/82 (68%)
Frame = +3
Query: 6 MEPDASVYVTLISSFVSNGNLLIAFEILREMALKLSFPGPSDKNLPILMDALRTLSEDGI 185
M+PD V+V LIS+F+S N +AFE+L+EM + +FP P DKN ++ DA+ LSED
Sbjct: 751 MKPDMFVFVALISAFLSELNPPLAFEVLKEMVDEGNFPDPLDKNYLVVRDAILKLSEDTR 810
Query: 186 TSSDVKNLIADGLLPAICSASD 251
T+ VKNLI +G +P I S SD
Sbjct: 811 TARPVKNLIKEGSIPTI-SLSD 831
>ref|XP_007142773.1| hypothetical protein PHAVU_007G015700g [Phaseolus vulgaris]
gi|561015963|gb|ESW14767.1| hypothetical protein
PHAVU_007G015700g [Phaseolus vulgaris]
Length = 844
Score = 73.6 bits (179), Expect = 3e-11
Identities = 36/79 (45%), Positives = 53/79 (67%)
Frame = +3
Query: 3 EMEPDASVYVTLISSFVSNGNLLIAFEILREMALKLSFPGPSDKNLPILMDALRTLSEDG 182
EM+PD+ +Y+ L+S+F+S+ NL AFEI +EM FP DK+ PI+MDA+ S+D
Sbjct: 764 EMKPDSFIYIALLSAFLSDMNLASAFEIFKEMVYSGFFPKSHDKSYPIVMDAIDKFSKDH 823
Query: 183 ITSSDVKNLIADGLLPAIC 239
TSS ++ L+ +G LP C
Sbjct: 824 RTSSGIQVLMEEGKLPTRC 842
>ref|XP_003592708.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355481756|gb|AES62959.1| Pentatricopeptide repeat
protein-like protein [Medicago truncatula]
Length = 1430
Score = 72.0 bits (175), Expect = 8e-11
Identities = 37/79 (46%), Positives = 52/79 (65%)
Frame = +3
Query: 3 EMEPDASVYVTLISSFVSNGNLLIAFEILREMALKLSFPGPSDKNLPILMDALRTLSEDG 182
EM+PD+ +YV L+S+++S+ NL AFEI REM FP P DKN P ++DA+ +D
Sbjct: 736 EMKPDSFIYVALLSAYLSDLNLTSAFEIFREMVDLGFFPKPLDKNYPTVVDAILKFCKDD 795
Query: 183 ITSSDVKNLIADGLLPAIC 239
TSS ++ LI +G LP C
Sbjct: 796 RTSSGIQVLIEEGKLPMHC 814
>ref|XP_007043262.1| Tetratricopeptide repeat (TPR)-like superfamily protein, putative
[Theobroma cacao] gi|508707197|gb|EOX99093.1|
Tetratricopeptide repeat (TPR)-like superfamily protein,
putative [Theobroma cacao]
Length = 850
Score = 71.6 bits (174), Expect = 1e-10
Identities = 36/77 (46%), Positives = 53/77 (68%)
Frame = +3
Query: 6 MEPDASVYVTLISSFVSNGNLLIAFEILREMALKLSFPGPSDKNLPILMDALRTLSEDGI 185
M+PD+ VY+ LIS+F+S+ NL F++L+EM + P P DKN I+ DA+ LSED
Sbjct: 765 MKPDSYVYIALISAFLSDTNLPSVFDMLKEMVDGGNLPDPLDKNFLIIRDAICKLSEDAR 824
Query: 186 TSSDVKNLIADGLLPAI 236
T S +K+LIA+G +P +
Sbjct: 825 TFSSIKDLIAEGRIPDV 841
>ref|XP_004497230.1| PREDICTED: uncharacterized protein LOC101514261 [Cicer arietinum]
Length = 1625
Score = 71.6 bits (174), Expect = 1e-10
Identities = 36/79 (45%), Positives = 51/79 (64%)
Frame = +3
Query: 3 EMEPDASVYVTLISSFVSNGNLLIAFEILREMALKLSFPGPSDKNLPILMDALRTLSEDG 182
EM+PDA +Y+ L+S+++S+ NL AFEI REM FP P DKN PI +DA +D
Sbjct: 730 EMKPDAFIYIALLSAYLSDMNLTSAFEIFREMVDLGYFPKPLDKNYPIAVDATLKFCKDH 789
Query: 183 ITSSDVKNLIADGLLPAIC 239
TSS ++ L+ +G +P C
Sbjct: 790 RTSSSIQVLMEEGKIPTHC 808
>ref|XP_006605847.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like [Glycine max]
Length = 821
Score = 71.2 bits (173), Expect = 1e-10
Identities = 36/79 (45%), Positives = 52/79 (65%)
Frame = +3
Query: 3 EMEPDASVYVTLISSFVSNGNLLIAFEILREMALKLSFPGPSDKNLPILMDALRTLSEDG 182
+M+PD+ +Y+ LISSF+S+ +L AFEI +EM FP DKN I+MDA+ S+D
Sbjct: 742 DMKPDSFIYIALISSFLSDMDLASAFEIFKEMVYSGYFPESHDKNYSIVMDAIDKFSKDH 801
Query: 183 ITSSDVKNLIADGLLPAIC 239
TSS ++ L+ +G LP C
Sbjct: 802 RTSSGIQVLMEEGKLPTHC 820
>ref|XP_006437612.1| hypothetical protein CICLE_v10030697mg [Citrus clementina]
gi|557539808|gb|ESR50852.1| hypothetical protein
CICLE_v10030697mg [Citrus clementina]
Length = 845
Score = 70.1 bits (170), Expect = 3e-10
Identities = 40/82 (48%), Positives = 55/82 (67%)
Frame = +3
Query: 6 MEPDASVYVTLISSFVSNGNLLIAFEILREMALKLSFPGPSDKNLPILMDALRTLSEDGI 185
M+PD V+V LIS+F+S N +AFE+L+EM + +FP P DKN ++ DA+ LSED
Sbjct: 751 MKPDMFVFVALISAFLSELNPPLAFEVLKEMVDEGNFPDPLDKNYLVVRDAILKLSEDTR 810
Query: 186 TSSDVKNLIADGLLPAICSASD 251
T+ VK LI +G +P I S SD
Sbjct: 811 TARPVKILIKEGSIPTI-SLSD 831
>ref|XP_006836716.1| hypothetical protein AMTR_s00088p00119450 [Amborella trichopoda]
gi|548839276|gb|ERM99569.1| hypothetical protein
AMTR_s00088p00119450 [Amborella trichopoda]
Length = 858
Score = 69.7 bits (169), Expect = 4e-10
Identities = 39/80 (48%), Positives = 50/80 (62%)
Frame = +3
Query: 9 EPDASVYVTLISSFVSNGNLLIAFEILREMALKLSFPGPSDKNLPILMDALRTLSEDGIT 188
+PDA +YV LI S VS ++ AF ILREM K P PSDK+ +L+++L + ED
Sbjct: 770 DPDAFIYVALIDSLVSIADMFSAFRILREMIRKGKCPSPSDKHYALLLESLCKMYEDKHI 829
Query: 189 SSDVKNLIADGLLPAICSAS 248
SSDV LI DG +P I S S
Sbjct: 830 SSDVNALIEDGGIPMIHSPS 849
>ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like [Cucumis sativus]
gi|449510601|ref|XP_004163711.1| PREDICTED: putative
pentatricopeptide repeat-containing protein At5g08310,
mitochondrial-like [Cucumis sativus]
Length = 849
Score = 65.1 bits (157), Expect = 1e-08
Identities = 35/78 (44%), Positives = 48/78 (61%)
Frame = +3
Query: 3 EMEPDASVYVTLISSFVSNGNLLIAFEILREMALKLSFPGPSDKNLPILMDALRTLSEDG 182
EM+PD+ V V LI +F+S N +AF IL+E K + P P+DKN + DA+ LS+D
Sbjct: 765 EMKPDSYVSVALIDAFISKHNFSMAFNILKETIEKGNIPDPTDKNYVTIKDAIFKLSKDE 824
Query: 183 ITSSDVKNLIADGLLPAI 236
T +VK LI G +P I
Sbjct: 825 QTGLEVKALIEKGRIPTI 842
>ref|XP_006399321.1| hypothetical protein EUTSA_v10015588mg [Eutrema salsugineum]
gi|557100411|gb|ESQ40774.1| hypothetical protein
EUTSA_v10015588mg [Eutrema salsugineum]
Length = 829
Score = 64.3 bits (155), Expect = 2e-08
Identities = 36/84 (42%), Positives = 49/84 (58%)
Frame = +3
Query: 3 EMEPDASVYVTLISSFVSNGNLLIAFEILREMALKLSFPGPSDKNLPILMDALRTLSEDG 182
EMEPD++VY++L+SS +S+ N+ F I REM K FP D+N + +DA ED
Sbjct: 746 EMEPDSAVYLSLVSSLLSSENVSAGFGIFREMVHKGRFPVSVDRNYLLAVDATNKFVEDY 805
Query: 183 ITSSDVKNLIADGLLPAICSASDK 254
TS + LI DG P + S S K
Sbjct: 806 RTSCYLTGLIKDGRFPVVESVSRK 829
>ref|XP_006286449.1| hypothetical protein CARUB_v10000227mg [Capsella rubella]
gi|482555155|gb|EOA19347.1| hypothetical protein
CARUB_v10000227mg [Capsella rubella]
Length = 830
Score = 62.0 bits (149), Expect = 8e-08
Identities = 33/84 (39%), Positives = 49/84 (58%)
Frame = +3
Query: 3 EMEPDASVYVTLISSFVSNGNLLIAFEILREMALKLSFPGPSDKNLPILMDALRTLSEDG 182
EMEPD++VY++L+SSF+S+ N+ F I REM + FP D+N + +DA +D
Sbjct: 747 EMEPDSAVYLSLVSSFLSSENISAGFGIFREMVNEGRFPVSVDRNYLLAVDATNKFVDDS 806
Query: 183 ITSSDVKNLIADGLLPAICSASDK 254
TS + LI +G P + S K
Sbjct: 807 KTSCYLTGLIKNGRFPIVAVLSRK 830
>ref|XP_004237169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like [Solanum lycopersicum]
Length = 852
Score = 61.2 bits (147), Expect = 1e-07
Identities = 33/83 (39%), Positives = 53/83 (63%)
Frame = +3
Query: 3 EMEPDASVYVTLISSFVSNGNLLIAFEILREMALKLSFPGPSDKNLPILMDALRTLSEDG 182
+M+PD S+Y+ LI +F+ N N A E+L+++ S + K+ PIL +A+R+LS D
Sbjct: 768 DMKPDPSIYIVLIDAFIKNMNPNEACELLQKVVHDESLLDLNIKSRPILKEAIRSLSADP 827
Query: 183 ITSSDVKNLIADGLLPAICSASD 251
TSS VK L+ +G L A+C+ +
Sbjct: 828 RTSSHVKILLEEGHLTALCNVCE 850
>ref|NP_196448.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635617|sp|P0C8Q6.1|PP368_ARATH RecName:
Full=Putative pentatricopeptide repeat-containing
protein At5g08310, mitochondrial; Flags: Precursor
gi|332003898|gb|AED91281.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 832
Score = 59.7 bits (143), Expect = 4e-07
Identities = 33/82 (40%), Positives = 48/82 (58%)
Frame = +3
Query: 3 EMEPDASVYVTLISSFVSNGNLLIAFEILREMALKLSFPGPSDKNLPILMDALRTLSEDG 182
EMEPD++VY++L+SSF+S+ N+ F I REM K FP D+N + ++ ED
Sbjct: 749 EMEPDSAVYLSLVSSFLSSENINAGFGIFREMVHKGRFPVSVDRNYMLAVNVTSKFVEDL 808
Query: 183 ITSSDVKNLIADGLLPAICSAS 248
TS + LI DG +P + S
Sbjct: 809 RTSCYLTCLIKDGRIPILAVVS 830
>ref|XP_006359301.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like isoform X1 [Solanum
tuberosum] gi|565387018|ref|XP_006359302.1| PREDICTED:
putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like isoform X2 [Solanum
tuberosum] gi|565387020|ref|XP_006359303.1| PREDICTED:
putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like isoform X3 [Solanum
tuberosum]
Length = 852
Score = 59.3 bits (142), Expect = 5e-07
Identities = 30/83 (36%), Positives = 54/83 (65%)
Frame = +3
Query: 3 EMEPDASVYVTLISSFVSNGNLLIAFEILREMALKLSFPGPSDKNLPILMDALRTLSEDG 182
+M+PD S+Y+ LI +F+ N N A ++L+++ S + K+ PIL +A+ +LS D
Sbjct: 768 DMKPDPSIYIVLIDAFIKNMNPNEACDLLQKVVHDESLRDLNSKSRPILKEAILSLSADP 827
Query: 183 ITSSDVKNLIADGLLPAICSASD 251
TSS++K L+ +G L A+C+ ++
Sbjct: 828 RTSSNLKILLEEGHLAALCNVNE 850