BLASTX nr result
ID: Cocculus23_contig00052627
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00052627
(253 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN81354.1| hypothetical protein VITISV_003396 [Vitis vinifera] 146 3e-33
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 144 1e-32
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 143 2e-32
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 143 2e-32
ref|XP_004229099.1| PREDICTED: uncharacterized protein LOC101259... 143 3e-32
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 142 6e-32
pir||C47758 retrovirus-related reverse transcriptase homolog - P... 140 1e-31
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote... 140 2e-31
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa... 138 7e-31
gb|AAG44312.1|AF232963_1 reverse transcriptase-like protein [Ama... 138 9e-31
gb|AAL36465.1| reverse transcriptase [Setaria italica] 137 1e-30
gb|AAG44343.1|AF233007_1 reverse transcriptase-like protein [Ama... 137 2e-30
emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group] 136 3e-30
gb|AAL36472.1| reverse transcriptase [Setaria faberi] 136 3e-30
gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subc... 135 6e-30
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 135 6e-30
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 135 6e-30
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 135 6e-30
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 135 6e-30
gb|AAK84849.1| reverse transcriptase [Zea mays] 135 8e-30
>emb|CAN81354.1| hypothetical protein VITISV_003396 [Vitis vinifera]
Length = 252
Score = 146 bits (368), Expect = 3e-33
Identities = 69/85 (81%), Positives = 76/85 (89%), Gaps = 3/85 (3%)
Frame = -2
Query: 246 NLELEQLDVKTAFLHGELEEQIYMHQPEGFEVPGKEDHVCLLKKSLYGLKQSPRQWYKRF 67
+L++EQLDVK AFLHGELEEQIYMHQPEGF + GKE+HVCLLKKSLYGLKQSPRQWYKRF
Sbjct: 6 DLKVEQLDVKIAFLHGELEEQIYMHQPEGFIISGKENHVCLLKKSLYGLKQSPRQWYKRF 65
Query: 66 DTFMTG---NGYNRSEYDSCVYHKK 1
TFM G N Y+RSEYD+CVYHKK
Sbjct: 66 VTFMIGNESNDYHRSEYDNCVYHKK 90
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 144 bits (363), Expect = 1e-32
Identities = 65/82 (79%), Positives = 73/82 (89%)
Frame = -2
Query: 246 NLELEQLDVKTAFLHGELEEQIYMHQPEGFEVPGKEDHVCLLKKSLYGLKQSPRQWYKRF 67
NLELEQLDVKTAFLHGELEE+IYM QP+GF+VPGKE+HVC LKKSLYGLKQSPRQWYKRF
Sbjct: 896 NLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRF 955
Query: 66 DTFMTGNGYNRSEYDSCVYHKK 1
D++M GY RS YD CVY+ +
Sbjct: 956 DSYMVKLGYTRSSYDCCVYYNR 977
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 143 bits (361), Expect = 2e-32
Identities = 66/81 (81%), Positives = 74/81 (91%)
Frame = -2
Query: 246 NLELEQLDVKTAFLHGELEEQIYMHQPEGFEVPGKEDHVCLLKKSLYGLKQSPRQWYKRF 67
+LELEQLDVKTAFLHGELEE+IYM QPEGF VPGKED+VC LK+SLYGLKQSPRQWYKRF
Sbjct: 911 DLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRF 970
Query: 66 DTFMTGNGYNRSEYDSCVYHK 4
D+FM +G+ RSE+DSCVY K
Sbjct: 971 DSFMLSHGFKRSEFDSCVYIK 991
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 143 bits (361), Expect = 2e-32
Identities = 66/81 (81%), Positives = 74/81 (91%)
Frame = -2
Query: 246 NLELEQLDVKTAFLHGELEEQIYMHQPEGFEVPGKEDHVCLLKKSLYGLKQSPRQWYKRF 67
+LELEQLDVKTAFLHGELEE+IYM QPEGF VPGKED+VC LK+SLYGLKQSPRQWYKRF
Sbjct: 764 DLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRF 823
Query: 66 DTFMTGNGYNRSEYDSCVYHK 4
D+FM +G+ RSE+DSCVY K
Sbjct: 824 DSFMLSHGFKRSEFDSCVYIK 844
>ref|XP_004229099.1| PREDICTED: uncharacterized protein LOC101259364 [Solanum
lycopersicum]
Length = 505
Score = 143 bits (360), Expect = 3e-32
Identities = 64/82 (78%), Positives = 73/82 (89%)
Frame = -2
Query: 246 NLELEQLDVKTAFLHGELEEQIYMHQPEGFEVPGKEDHVCLLKKSLYGLKQSPRQWYKRF 67
N+ELEQLDVKTAFLHGELEE+IYM QP+GF+VPGKE+HVC LKKSLYGLKQSPRQWYKRF
Sbjct: 221 NVELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRF 280
Query: 66 DTFMTGNGYNRSEYDSCVYHKK 1
D++M GY RS YD CVY+ +
Sbjct: 281 DSYMVKLGYTRSSYDCCVYYNR 302
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 142 bits (357), Expect = 6e-32
Identities = 65/81 (80%), Positives = 73/81 (90%)
Frame = -2
Query: 246 NLELEQLDVKTAFLHGELEEQIYMHQPEGFEVPGKEDHVCLLKKSLYGLKQSPRQWYKRF 67
+LELEQLDVKT FLHGELEE+IYM QPEGF VPGKED+VC LK+SLYGLKQSPRQWYKRF
Sbjct: 911 DLELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRF 970
Query: 66 DTFMTGNGYNRSEYDSCVYHK 4
D+FM +G+ RSE+DSCVY K
Sbjct: 971 DSFMLSHGFKRSEFDSCVYIK 991
>pir||C47758 retrovirus-related reverse transcriptase homolog - Platanus
occidentalis retrotransposon copia-like (fragment)
gi|169641|gb|AAA33849.1| reverse transcriptase, partial
[Platanus occidentalis]
Length = 89
Score = 140 bits (354), Expect = 1e-31
Identities = 62/73 (84%), Positives = 68/73 (93%)
Frame = -2
Query: 219 KTAFLHGELEEQIYMHQPEGFEVPGKEDHVCLLKKSLYGLKQSPRQWYKRFDTFMTGNGY 40
KTAFLHGEL+EQIYMHQP+GF + GKEDHVCLLKKSLYGLKQSPRQWYKRFDTFM GN Y
Sbjct: 1 KTAFLHGELDEQIYMHQPKGFMIQGKEDHVCLLKKSLYGLKQSPRQWYKRFDTFMVGNDY 60
Query: 39 NRSEYDSCVYHKK 1
RS++DSCVYH+K
Sbjct: 61 CRSKFDSCVYHRK 73
>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
Group] gi|22655747|gb|AAN04164.1| Putative
retrotransposon protein [Oryza sativa Japonica Group]
gi|31431214|gb|AAP53029.1| retrotransposon protein,
putative, Ty1-copia subclass, expressed [Oryza sativa
Japonica Group]
Length = 1229
Score = 140 bits (353), Expect = 2e-31
Identities = 65/81 (80%), Positives = 72/81 (88%)
Frame = -2
Query: 246 NLELEQLDVKTAFLHGELEEQIYMHQPEGFEVPGKEDHVCLLKKSLYGLKQSPRQWYKRF 67
+LELEQLDVKT FLHGELEE+IYM QPEGF VPGKED VC LK+SLYGLKQSPRQWYKRF
Sbjct: 857 DLELEQLDVKTIFLHGELEEEIYMDQPEGFIVPGKEDDVCKLKRSLYGLKQSPRQWYKRF 916
Query: 66 DTFMTGNGYNRSEYDSCVYHK 4
D+FM +G+ RSE+DSCVY K
Sbjct: 917 DSFMLSHGFKRSEFDSCVYIK 937
>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
gi|18542925|gb|AAL75759.1| Putative pol polyprotein
[Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1005
Score = 138 bits (348), Expect = 7e-31
Identities = 64/81 (79%), Positives = 71/81 (87%)
Frame = -2
Query: 246 NLELEQLDVKTAFLHGELEEQIYMHQPEGFEVPGKEDHVCLLKKSLYGLKQSPRQWYKRF 67
+LELEQLDVKTAFLHGELEE+IYM QPEGF VPGKE +VC LK+S YGLKQSPRQWYKRF
Sbjct: 595 DLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEGYVCKLKRSFYGLKQSPRQWYKRF 654
Query: 66 DTFMTGNGYNRSEYDSCVYHK 4
D FM +G+ RSE+DSCVY K
Sbjct: 655 DLFMLSHGFKRSEFDSCVYIK 675
>gb|AAG44312.1|AF232963_1 reverse transcriptase-like protein [Amaranthus cruentus]
Length = 95
Score = 138 bits (347), Expect = 9e-31
Identities = 62/77 (80%), Positives = 68/77 (88%)
Frame = -2
Query: 231 QLDVKTAFLHGELEEQIYMHQPEGFEVPGKEDHVCLLKKSLYGLKQSPRQWYKRFDTFMT 52
+ DVKTAFLHGELEE+IYM QP+GF+VPGKED+VC LKKSLYGLKQSPRQWYKRFD+FM
Sbjct: 1 EFDVKTAFLHGELEEEIYMTQPDGFQVPGKEDYVCKLKKSLYGLKQSPRQWYKRFDSFMI 60
Query: 51 GNGYNRSEYDSCVYHKK 1
GYNRS YD CVYH K
Sbjct: 61 EIGYNRSPYDCCVYHSK 77
>gb|AAL36465.1| reverse transcriptase [Setaria italica]
Length = 92
Score = 137 bits (346), Expect = 1e-30
Identities = 63/76 (82%), Positives = 68/76 (89%)
Frame = -2
Query: 231 QLDVKTAFLHGELEEQIYMHQPEGFEVPGKEDHVCLLKKSLYGLKQSPRQWYKRFDTFMT 52
Q+DVKTAFLHGELEE+IYM QPEGF VPGKEDHVC LKKSLYGLKQSPRQWYKRFD+FM
Sbjct: 1 QMDVKTAFLHGELEEEIYMDQPEGFIVPGKEDHVCKLKKSLYGLKQSPRQWYKRFDSFML 60
Query: 51 GNGYNRSEYDSCVYHK 4
N + RS+YDSCVY K
Sbjct: 61 SNCFKRSDYDSCVYIK 76
>gb|AAG44343.1|AF233007_1 reverse transcriptase-like protein [Amaranthus quitensis]
Length = 94
Score = 137 bits (344), Expect = 2e-30
Identities = 61/77 (79%), Positives = 68/77 (88%)
Frame = -2
Query: 231 QLDVKTAFLHGELEEQIYMHQPEGFEVPGKEDHVCLLKKSLYGLKQSPRQWYKRFDTFMT 52
+ DVKTAFLHGELEE+IYM QP+GF+VPGKED+VC LK+SLYGLKQSPRQWYKRFD+FM
Sbjct: 1 EFDVKTAFLHGELEEEIYMTQPDGFQVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMI 60
Query: 51 GNGYNRSEYDSCVYHKK 1
GYNRS YD CVYH K
Sbjct: 61 EIGYNRSPYDCCVYHSK 77
>emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group]
Length = 576
Score = 136 bits (342), Expect = 3e-30
Identities = 62/81 (76%), Positives = 72/81 (88%)
Frame = -2
Query: 246 NLELEQLDVKTAFLHGELEEQIYMHQPEGFEVPGKEDHVCLLKKSLYGLKQSPRQWYKRF 67
+LEL+QLDVKT FLHGELE++IYM QPEGF VPGKED+VC LK+SLYGLKQSPRQWYKRF
Sbjct: 244 DLELKQLDVKTTFLHGELEDEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRF 303
Query: 66 DTFMTGNGYNRSEYDSCVYHK 4
D+FM +G+ SE+DSCVY K
Sbjct: 304 DSFMLSHGFKWSEFDSCVYIK 324
>gb|AAL36472.1| reverse transcriptase [Setaria faberi]
Length = 92
Score = 136 bits (342), Expect = 3e-30
Identities = 62/76 (81%), Positives = 67/76 (88%)
Frame = -2
Query: 231 QLDVKTAFLHGELEEQIYMHQPEGFEVPGKEDHVCLLKKSLYGLKQSPRQWYKRFDTFMT 52
Q+DVKTAFLHGELEE+IYM QPEGF VPGKEDHVC LKKSLYGLKQSPRQWYKRFD+FM
Sbjct: 1 QMDVKTAFLHGELEEEIYMDQPEGFIVPGKEDHVCKLKKSLYGLKQSPRQWYKRFDSFML 60
Query: 51 GNGYNRSEYDSCVYHK 4
N + S+YDSCVY K
Sbjct: 61 SNSFKGSDYDSCVYIK 76
>gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1131
Score = 135 bits (340), Expect = 6e-30
Identities = 63/81 (77%), Positives = 71/81 (87%)
Frame = -2
Query: 246 NLELEQLDVKTAFLHGELEEQIYMHQPEGFEVPGKEDHVCLLKKSLYGLKQSPRQWYKRF 67
+LELEQLDVKT FLHGELE +IYM QPEGF VPGKED+VC LK+SL GLKQSPRQWYKRF
Sbjct: 802 DLELEQLDVKTTFLHGELEVEIYMDQPEGFIVPGKEDYVCKLKRSLDGLKQSPRQWYKRF 861
Query: 66 DTFMTGNGYNRSEYDSCVYHK 4
D+FM +G+ RSE+DSCVY K
Sbjct: 862 DSFMLSHGFKRSEFDSCVYIK 882
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 135 bits (340), Expect = 6e-30
Identities = 64/83 (77%), Positives = 71/83 (85%)
Frame = -2
Query: 252 SSNLELEQLDVKTAFLHGELEEQIYMHQPEGFEVPGKEDHVCLLKKSLYGLKQSPRQWYK 73
S +LELEQLDVKTAFLHGELEE IYM QPEGF VPGKE +VC LK+SLYGLKQSPRQW K
Sbjct: 920 SHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNK 979
Query: 72 RFDTFMTGNGYNRSEYDSCVYHK 4
RFD+FM + + RS+YDSCVY K
Sbjct: 980 RFDSFMLSHSFKRSKYDSCVYIK 1002
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 135 bits (340), Expect = 6e-30
Identities = 64/83 (77%), Positives = 71/83 (85%)
Frame = -2
Query: 252 SSNLELEQLDVKTAFLHGELEEQIYMHQPEGFEVPGKEDHVCLLKKSLYGLKQSPRQWYK 73
S +LELEQLDVKTAFLHGELEE IYM QPEGF VPGKE +VC LK+SLYGLKQSPRQW K
Sbjct: 920 SHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNK 979
Query: 72 RFDTFMTGNGYNRSEYDSCVYHK 4
RFD+FM + + RS+YDSCVY K
Sbjct: 980 RFDSFMLSHSFKRSKYDSCVYIK 1002
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 135 bits (340), Expect = 6e-30
Identities = 64/83 (77%), Positives = 71/83 (85%)
Frame = -2
Query: 252 SSNLELEQLDVKTAFLHGELEEQIYMHQPEGFEVPGKEDHVCLLKKSLYGLKQSPRQWYK 73
S +LELEQLDVKTAFLHGELEE IYM QPEGF VPGKE +VC LK+SLYGLKQSPRQW K
Sbjct: 920 SHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNK 979
Query: 72 RFDTFMTGNGYNRSEYDSCVYHK 4
RFD+FM + + RS+YDSCVY K
Sbjct: 980 RFDSFMLSHSFKRSKYDSCVYIK 1002
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 135 bits (340), Expect = 6e-30
Identities = 64/83 (77%), Positives = 71/83 (85%)
Frame = -2
Query: 252 SSNLELEQLDVKTAFLHGELEEQIYMHQPEGFEVPGKEDHVCLLKKSLYGLKQSPRQWYK 73
S +LELEQLDVKTAFLHGELEE IYM QPEGF VPGKE +VC LK+SLYGLKQSPRQW K
Sbjct: 922 SHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNK 981
Query: 72 RFDTFMTGNGYNRSEYDSCVYHK 4
RFD+FM + + RS+YDSCVY K
Sbjct: 982 RFDSFMLSHSFKRSKYDSCVYIK 1004
>gb|AAK84849.1| reverse transcriptase [Zea mays]
Length = 94
Score = 135 bits (339), Expect = 8e-30
Identities = 61/76 (80%), Positives = 67/76 (88%)
Frame = -2
Query: 231 QLDVKTAFLHGELEEQIYMHQPEGFEVPGKEDHVCLLKKSLYGLKQSPRQWYKRFDTFMT 52
+ DVKTAFLHG+LEE IYM QPEGF VPGKED+VC LKKSLYGLKQSPRQWYKRFD+FM
Sbjct: 1 EFDVKTAFLHGDLEEDIYMDQPEGFIVPGKEDYVCRLKKSLYGLKQSPRQWYKRFDSFML 60
Query: 51 GNGYNRSEYDSCVYHK 4
NG+ RS+YDSCVY K
Sbjct: 61 SNGFQRSQYDSCVYLK 76