BLASTX nr result
ID: Cocculus23_contig00051302
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00051302
(733 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC95126.1| gag-pol polyprotein [Populus deltoides] 84 1e-44
gb|AGJ83729.1| gag-pol polyprotein, partial [Caragana korshinskii] 76 2e-37
emb|CAN80083.1| hypothetical protein VITISV_011293 [Vitis vinifera] 60 1e-06
emb|CAN61815.1| hypothetical protein VITISV_009920 [Vitis vinifera] 60 1e-06
gb|AAG10812.1|AC018460_6 Putative retroelement polyprotein [Arab... 58 3e-06
emb|CAN74430.1| hypothetical protein VITISV_010987 [Vitis vinifera] 58 3e-06
emb|CAN74984.1| hypothetical protein VITISV_035210 [Vitis vinifera] 58 3e-06
emb|CAN70361.1| hypothetical protein VITISV_033646 [Vitis vinifera] 58 3e-06
ref|XP_007161442.1| hypothetical protein PHAVU_001G069100g, part... 44 4e-06
emb|CAN69647.1| hypothetical protein VITISV_022133 [Vitis vinifera] 58 4e-06
emb|CAN75041.1| hypothetical protein VITISV_027174 [Vitis vinifera] 58 4e-06
emb|CAN79142.1| hypothetical protein VITISV_040460 [Vitis vinifera] 57 5e-06
>emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]
Length = 1382
Score = 84.0 bits (206), Expect(4) = 1e-44
Identities = 37/41 (90%), Positives = 38/41 (92%)
Frame = -2
Query: 732 GCICFVLRPHVERNKMSSRSAICVFLGYGEGKKGYRCFDPI 610
GC FVL PHVERNK+SSRSAICVFLGYGEGKKGYRCFDPI
Sbjct: 708 GCTYFVLHPHVERNKLSSRSAICVFLGYGEGKKGYRCFDPI 748
Score = 83.6 bits (205), Expect(4) = 1e-44
Identities = 60/152 (39%), Positives = 70/152 (46%), Gaps = 1/152 (0%)
Frame = -3
Query: 608 YVSCHVLFHEHIPFFTIPGSMHNVTKSDLIHIXXXXXXXXXXXXXXXXXXXPITDSHLLV 429
YVS HV+F EHIPFF+IP + H++TKSDLIHI D+ V
Sbjct: 753 YVSHHVVFLEHIPFFSIPSTTHSLTKSDLIHIDPFSEDSG-------------NDTSPYV 799
Query: 428 LPFLKHFSRRAKSTTSAGPNVPPNDGSDTQPLVEMGTSSLPTTTQALSENVDPPHYPQ-H 252
H S + S P S T QA SE VDPP
Sbjct: 800 RSICTHNSAGTGTLLSGTPEA----------------SFSSTAPQASSEIVDPPPRQSIR 843
Query: 251 FHKSTQSFDFSYSCYSPSFASFLASINNLFEP 156
KST+ DF+YSCYS SF SFLA I+ LFEP
Sbjct: 844 IRKSTKLPDFAYSCYSSSFTSFLAYIHCLFEP 875
Score = 53.1 bits (126), Expect(4) = 1e-44
Identities = 27/44 (61%), Positives = 31/44 (70%), Gaps = 3/44 (6%)
Frame = -1
Query: 151 YDEAALNSLWQQAIAEDLFALHKTKTWDLVLLPPGKC---CCWL 29
Y EA L+ L QQA+ E+L ALHKT TWDLV LPPGK C W+
Sbjct: 878 YKEAILDPLGQQAMDEELSALHKTDTWDLVPLPPGKSVVGCRWV 921
Score = 27.3 bits (59), Expect(4) = 1e-44
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2
Query: 39 VVGYHWVYKIKTN 1
VVG WVYKIKTN
Sbjct: 915 VVGCRWVYKIKTN 927
>gb|AGJ83729.1| gag-pol polyprotein, partial [Caragana korshinskii]
Length = 732
Score = 75.9 bits (185), Expect(4) = 2e-37
Identities = 32/40 (80%), Positives = 37/40 (92%)
Frame = -2
Query: 732 GCICFVLRPHVERNKMSSRSAICVFLGYGEGKKGYRCFDP 613
G CFVLRP VER+K+SSRSAICVFLGYG+G+KGYRC+DP
Sbjct: 224 GSTCFVLRPQVERSKLSSRSAICVFLGYGDGQKGYRCYDP 263
Score = 64.3 bits (155), Expect(4) = 2e-37
Identities = 52/153 (33%), Positives = 65/153 (42%), Gaps = 2/153 (1%)
Frame = -3
Query: 608 YVSCHVLFHEHIPFFTIPGSMHNVTKSDLIHIXXXXXXXXXXXXXXXXXXXPITDSHLLV 429
YVS HV+F EHIPF++ S+L HI
Sbjct: 269 YVSRHVVFLEHIPFYSFSSESSITNSSELTHID--------------------------- 301
Query: 428 LPFLKHFSRRAKSTTSAGPNVPPNDGSDTQPLVEMGTSSLPTTTQALSENVDPP--HYPQ 255
PF +TS+ NV + T P + + +P T Q VDPP YP
Sbjct: 302 -PF------GPNDSTSSDCNVENCRTNTTTP--DDDITLVPPTAQPPPAIVDPPPPRYPS 352
Query: 254 HFHKSTQSFDFSYSCYSPSFASFLASINNLFEP 156
KSTQ DF YS YS SF SFL+SI++L EP
Sbjct: 353 RHRKSTQLPDFVYSTYSASFVSFLSSIHSLSEP 385
Score = 60.5 bits (145), Expect(4) = 2e-37
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = -1
Query: 151 YDEAALNSLWQQAIAEDLFALHKTKTWDLVLLPPGK 44
Y+EA L+ LWQQA+AE+LFAL KT TWDLV LPPGK
Sbjct: 388 YEEAILDPLWQQAMAEELFALRKTDTWDLVPLPPGK 423
Score = 23.1 bits (48), Expect(4) = 2e-37
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 36 VGYHWVYKIKT 4
+G WVYKIKT
Sbjct: 426 IGSRWVYKIKT 436
>emb|CAN80083.1| hypothetical protein VITISV_011293 [Vitis vinifera]
Length = 777
Score = 59.7 bits (143), Expect = 1e-06
Identities = 25/41 (60%), Positives = 30/41 (73%)
Frame = -2
Query: 732 GCICFVLRPHVERNKMSSRSAICVFLGYGEGKKGYRCFDPI 610
G CFVL E NK+ SRS +C FLGYGE +KGYRC+DP+
Sbjct: 118 GSACFVLLQPHEHNKLESRSRLCCFLGYGETQKGYRCYDPV 158
>emb|CAN61815.1| hypothetical protein VITISV_009920 [Vitis vinifera]
Length = 1064
Score = 59.7 bits (143), Expect = 1e-06
Identities = 25/41 (60%), Positives = 30/41 (73%)
Frame = -2
Query: 732 GCICFVLRPHVERNKMSSRSAICVFLGYGEGKKGYRCFDPI 610
G CFVL E NK+ SRS +C FLGYGE +KGYRC+DP+
Sbjct: 480 GSACFVLLQPHEHNKLESRSRLCCFLGYGETQKGYRCYDPV 520
>gb|AAG10812.1|AC018460_6 Putative retroelement polyprotein [Arabidopsis thaliana]
Length = 1404
Score = 58.2 bits (139), Expect = 3e-06
Identities = 22/40 (55%), Positives = 31/40 (77%)
Frame = -2
Query: 732 GCICFVLRPHVERNKMSSRSAICVFLGYGEGKKGYRCFDP 613
GC+CFVL P +R+K+ ++S C+FLGY +KGY+CFDP
Sbjct: 680 GCVCFVLIPGEQRSKLDAKSTKCMFLGYSTTQKGYKCFDP 719
>emb|CAN74430.1| hypothetical protein VITISV_010987 [Vitis vinifera]
Length = 2471
Score = 58.2 bits (139), Expect = 3e-06
Identities = 24/41 (58%), Positives = 29/41 (70%)
Frame = -2
Query: 732 GCICFVLRPHVERNKMSSRSAICVFLGYGEGKKGYRCFDPI 610
G CFVL E NK+ RS +C FLGYGE +KGYRC+DP+
Sbjct: 983 GSACFVLLQSHEHNKLEPRSRLCCFLGYGETQKGYRCYDPV 1023
>emb|CAN74984.1| hypothetical protein VITISV_035210 [Vitis vinifera]
Length = 2408
Score = 58.2 bits (139), Expect = 3e-06
Identities = 24/41 (58%), Positives = 29/41 (70%)
Frame = -2
Query: 732 GCICFVLRPHVERNKMSSRSAICVFLGYGEGKKGYRCFDPI 610
G CFVL E NK+ RS +C FLGYGE +KGYRC+DP+
Sbjct: 1827 GSACFVLLQSHEHNKLEPRSRLCCFLGYGETQKGYRCYDPV 1867
>emb|CAN70361.1| hypothetical protein VITISV_033646 [Vitis vinifera]
Length = 1013
Score = 58.2 bits (139), Expect = 3e-06
Identities = 24/41 (58%), Positives = 29/41 (70%)
Frame = -2
Query: 732 GCICFVLRPHVERNKMSSRSAICVFLGYGEGKKGYRCFDPI 610
G CFVL E NK+ RS +C FLGYGE +KGYRC+DP+
Sbjct: 400 GSACFVLLQSHEHNKLEPRSRLCCFLGYGETQKGYRCYDPV 440
>ref|XP_007161442.1| hypothetical protein PHAVU_001G069100g, partial [Phaseolus
vulgaris] gi|561034906|gb|ESW33436.1| hypothetical
protein PHAVU_001G069100g, partial [Phaseolus vulgaris]
Length = 112
Score = 44.3 bits (103), Expect(2) = 4e-06
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = -3
Query: 608 YVSCHVLFHEHIPFFTIPGSMHNVTKSDLIHI 513
YVS HV+FH++IP ++ P + HN T+SDLI I
Sbjct: 47 YVSHHVIFHKYIPLYSFPSNSHNSTRSDLICI 78
Score = 33.5 bits (75), Expect(2) = 4e-06
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 702 VERNKMSSRSAICVFLGYGEGKKGYRCFDP 613
V+ +K+SS +CVF Y + +K Y C DP
Sbjct: 12 VKHSKLSSHFVLCVFHSYRDCQKNYHCHDP 41
>emb|CAN69647.1| hypothetical protein VITISV_022133 [Vitis vinifera]
Length = 2655
Score = 57.8 bits (138), Expect = 4e-06
Identities = 24/41 (58%), Positives = 29/41 (70%)
Frame = -2
Query: 732 GCICFVLRPHVERNKMSSRSAICVFLGYGEGKKGYRCFDPI 610
G CFVL E NK+ RS +C FLGYGE +KGYRC+DP+
Sbjct: 2000 GSXCFVLLQPHEHNKLEPRSRLCCFLGYGETQKGYRCYDPV 2040
>emb|CAN75041.1| hypothetical protein VITISV_027174 [Vitis vinifera]
Length = 1381
Score = 57.8 bits (138), Expect = 4e-06
Identities = 24/41 (58%), Positives = 29/41 (70%)
Frame = -2
Query: 732 GCICFVLRPHVERNKMSSRSAICVFLGYGEGKKGYRCFDPI 610
G CFVL E NK+ RS +C FLGYGE +KGYRC+DP+
Sbjct: 709 GSXCFVLLQPHEHNKLEPRSRLCCFLGYGETQKGYRCYDPV 749
>emb|CAN79142.1| hypothetical protein VITISV_040460 [Vitis vinifera]
Length = 1293
Score = 57.4 bits (137), Expect = 5e-06
Identities = 24/41 (58%), Positives = 29/41 (70%)
Frame = -2
Query: 732 GCICFVLRPHVERNKMSSRSAICVFLGYGEGKKGYRCFDPI 610
G CFVL E NK+ RS +C FLGYGE +KGYRC+DP+
Sbjct: 511 GFACFVLLQPHEHNKLEPRSRLCCFLGYGETQKGYRCYDPV 551