BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00050562
         (250 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containi...    98   1e-18
ref|XP_004514160.1| PREDICTED: pentatricopeptide repeat-containi...    96   7e-18
ref|XP_002320719.2| pentatricopeptide repeat-containing family p...    95   1e-17
ref|XP_006347873.1| PREDICTED: pentatricopeptide repeat-containi...    94   2e-17
ref|XP_004229808.1| PREDICTED: pentatricopeptide repeat-containi...    94   3e-17
gb|EXB76219.1| hypothetical protein L484_025573 [Morus notabilis]      92   7e-17
gb|AHB18411.1| pentatricopeptide repeat-containing protein [Goss...    92   1e-16
emb|CBI38872.3| unnamed protein product [Vitis vinifera]               91   1e-16
ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containi...    91   1e-16
emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]    91   1e-16
ref|XP_006490914.1| PREDICTED: pentatricopeptide repeat-containi...    88   1e-15
ref|XP_006445271.1| hypothetical protein CICLE_v10023562mg, part...    88   1e-15
ref|XP_007052071.1| Pentatricopeptide repeat (PPR) superfamily p...    87   2e-15
ref|XP_007155354.1| hypothetical protein PHAVU_003G194000g [Phas...    86   4e-15
ref|XP_002511699.1| pentatricopeptide repeat-containing protein,...    84   2e-14
gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]          84   3e-14
ref|XP_006397715.1| hypothetical protein EUTSA_v10001360mg [Eutr...    80   2e-13
gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wall...    77   2e-12
gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pas...    75   7e-12
ref|XP_006296085.1| hypothetical protein CARUB_v10025235mg [Caps...    74   2e-11

>ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
           gi|449480068|ref|XP_004155790.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
          Length = 638

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 51/89 (57%), Positives = 66/89 (74%), Gaps = 6/89 (6%)
 Frame = +2

Query: 2   SNLPTLHLLRNCRTQREINQIHARIITSGFIKKRSFTTKIILNFCSSIHPPLVEFARFLF 181
           S  PTL LLR+C TQ ++NQ+HARII +G++K  S TTKIILN  SS H PLVEFAR++F
Sbjct: 13  STPPTLLLLRHCETQNDVNQVHARIIKTGYLKNSSLTTKIILNSISSPHKPLVEFARYVF 72

Query: 182 FSQCSQQ----THV--DIFLWNAVMKSFS 250
           F++ + Q     H+  D FLWNAV+KS+S
Sbjct: 73  FTRYAVQRIRRNHLDDDPFLWNAVIKSYS 101


>ref|XP_004514160.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cicer arietinum]
          Length = 630

 Score = 95.5 bits (236), Expect = 7e-18
 Identities = 47/87 (54%), Positives = 63/87 (72%), Gaps = 4/87 (4%)
 Frame = +2

Query: 2   SNLPTLHLLRNCRTQREINQIHARIITSGFIKKRSFTTKIILNFCSSIHPPLVEFARFLF 181
           S +PTL LL  C T++ +NQIHAR+IT+GFIK  S TTK+IL F SS + PL+EFAR++F
Sbjct: 15  STIPTLILLPKCSTKQHLNQIHARLITTGFIKSTSLTTKLILTFVSSPNKPLIEFARYIF 74

Query: 182 FS----QCSQQTHVDIFLWNAVMKSFS 250
           F     + S   + D FLWNAV++S+S
Sbjct: 75  FKNHAFRVSNDKYEDPFLWNAVIRSYS 101


>ref|XP_002320719.2| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|550323642|gb|EEE99034.2|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 643

 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 45/90 (50%), Positives = 64/90 (71%), Gaps = 7/90 (7%)
 Frame = +2

Query: 2   SNLPTLHLLRNCRTQREINQIHARIITSGFIKKRSFTTKIILNFCSSIHPPLVEFARFLF 181
           S +PTL LL+ C+   +INQIHAR++T+GFIK    TTKIIL+F +S+H PL+EFARF+F
Sbjct: 14  SAIPTLVLLKKCKRLSDINQIHARLLTTGFIKNTFLTTKIILSFSTSLHAPLIEFARFIF 73

Query: 182 -------FSQCSQQTHVDIFLWNAVMKSFS 250
                  F +  ++   D FLWNA++K++S
Sbjct: 74  FRHHAFEFDEKEEEEEKDPFLWNAIIKTYS 103


>ref|XP_006347873.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Solanum tuberosum]
          Length = 625

 Score = 94.0 bits (232), Expect = 2e-17
 Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 3/83 (3%)
 Frame = +2

Query: 11  PTLHLLRNCRTQREINQIHARIITSGFIKKRSFTTKIILNFCSSIHPPLVEFARFLFFSQ 190
           PTL   + C+TQ +I+QIHA++IT+G +K    TTK+IL   SS H P+VEFARFLFFS 
Sbjct: 16  PTLTFSQKCKTQVDIDQIHAQLITTGLVKNPFLTTKLILKLSSSPHTPIVEFARFLFFSD 75

Query: 191 ---CSQQTHVDIFLWNAVMKSFS 250
              CS++   D FLWN +MKSFS
Sbjct: 76  DFCCSKRNKKDPFLWNVIMKSFS 98


>ref|XP_004229808.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Solanum lycopersicum]
          Length = 625

 Score = 93.6 bits (231), Expect = 3e-17
 Identities = 46/83 (55%), Positives = 60/83 (72%), Gaps = 3/83 (3%)
 Frame = +2

Query: 11  PTLHLLRNCRTQREINQIHARIITSGFIKKRSFTTKIILNFCSSIHPPLVEFARFLFFSQ 190
           PTL   + C+TQ++I+QIHA++IT+G +K    TTK+IL   SS H P+VEFARFLFFS 
Sbjct: 16  PTLTFSQKCKTQQDIDQIHAQLITTGLVKYPFLTTKLILKLSSSPHTPIVEFARFLFFSA 75

Query: 191 ---CSQQTHVDIFLWNAVMKSFS 250
              CS++   D FLWN +MKSFS
Sbjct: 76  DFCCSKRNIKDPFLWNVIMKSFS 98


>gb|EXB76219.1| hypothetical protein L484_025573 [Morus notabilis]
          Length = 626

 Score = 92.0 bits (227), Expect = 7e-17
 Identities = 45/80 (56%), Positives = 58/80 (72%)
 Frame = +2

Query: 11  PTLHLLRNCRTQREINQIHARIITSGFIKKRSFTTKIILNFCSSIHPPLVEFARFLFFSQ 190
           PTL LL+ C+T   +NQIHAR+IT+G I   S + KI+L F SS HPPL EFAR++FFS+
Sbjct: 13  PTLVLLQKCKTLNAVNQIHARMITTGSINNCSLSAKIVLAFVSSPHPPLAEFARYVFFSR 72

Query: 191 CSQQTHVDIFLWNAVMKSFS 250
            +     D FLWNAV+KS+S
Sbjct: 73  HAFGNEDDPFLWNAVIKSYS 92


>gb|AHB18411.1| pentatricopeptide repeat-containing protein [Gossypium hirsutum]
          Length = 637

 Score = 91.7 bits (226), Expect = 1e-16
 Identities = 46/86 (53%), Positives = 61/86 (70%), Gaps = 3/86 (3%)
 Frame = +2

Query: 2   SNLPTLHLLRNCRTQREINQIHARIITSGFIKKRSFTTKIILNFCSSIHPPLVEFARFLF 181
           S LPTL LL+ CRT  ++NQIH R+IT+GFI+ +  TTKI+L F  S   PLV+FAR++F
Sbjct: 13  STLPTLALLQKCRTLTDVNQIHGRLITTGFIRSQVLTTKIVLTFSPSPFTPLVDFARYVF 72

Query: 182 FSQC---SQQTHVDIFLWNAVMKSFS 250
           F+     S +   D FLWNAV+KS+S
Sbjct: 73  FTYLAFRSPKQDEDPFLWNAVIKSYS 98


>emb|CBI38872.3| unnamed protein product [Vitis vinifera]
          Length = 379

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 48/86 (55%), Positives = 61/86 (70%), Gaps = 3/86 (3%)
 Frame = +2

Query: 2   SNLPTLHLLRNCRTQREINQIHARIITSGFIKKRSFTTKIILNFCSSIHPPLVEFARFLF 181
           S  PTL LL   +T  ++NQIH+R+IT+GFI   S TT+IILNF SS H PLVEFAR+LF
Sbjct: 13  STHPTLILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLF 72

Query: 182 FSQCSQQTH---VDIFLWNAVMKSFS 250
            S+   + H    + FLWNA++KSFS
Sbjct: 73  MSRHFGRKHRKQDNPFLWNAIIKSFS 98


>ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 48/86 (55%), Positives = 61/86 (70%), Gaps = 3/86 (3%)
 Frame = +2

Query: 2   SNLPTLHLLRNCRTQREINQIHARIITSGFIKKRSFTTKIILNFCSSIHPPLVEFARFLF 181
           S  PTL LL   +T  ++NQIH+R+IT+GFI   S TT+IILNF SS H PLVEFAR+LF
Sbjct: 13  STHPTLILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLF 72

Query: 182 FSQCSQQTH---VDIFLWNAVMKSFS 250
            S+   + H    + FLWNA++KSFS
Sbjct: 73  MSRHFGRKHRKQDNPFLWNAIIKSFS 98


>emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
          Length = 690

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 48/86 (55%), Positives = 61/86 (70%), Gaps = 3/86 (3%)
 Frame = +2

Query: 2   SNLPTLHLLRNCRTQREINQIHARIITSGFIKKRSFTTKIILNFCSSIHPPLVEFARFLF 181
           S  PTL LL   +T  ++NQIH+R+IT+GFI   S TT+IILNF SS H PLVEFAR+LF
Sbjct: 69  STHPTLILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLF 128

Query: 182 FSQCSQQTH---VDIFLWNAVMKSFS 250
            S+   + H    + FLWNA++KSFS
Sbjct: 129 MSRHFGRKHRKQDNPFLWNAIIKSFS 154


>ref|XP_006490914.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Citrus sinensis]
          Length = 634

 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 42/83 (50%), Positives = 58/83 (69%)
 Frame = +2

Query: 2   SNLPTLHLLRNCRTQREINQIHARIITSGFIKKRSFTTKIILNFCSSIHPPLVEFARFLF 181
           S   TL LLR C+T  ++NQIHAR+IT+GFIK    TTK++ +F SS   PL EFAR++F
Sbjct: 13  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 72

Query: 182 FSQCSQQTHVDIFLWNAVMKSFS 250
           F   + +   D FLWNA++K++S
Sbjct: 73  FKYHAFREKKDPFLWNAIIKTYS 95


>ref|XP_006445271.1| hypothetical protein CICLE_v10023562mg, partial [Citrus clementina]
           gi|557547533|gb|ESR58511.1| hypothetical protein
           CICLE_v10023562mg, partial [Citrus clementina]
          Length = 658

 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 42/83 (50%), Positives = 58/83 (69%)
 Frame = +2

Query: 2   SNLPTLHLLRNCRTQREINQIHARIITSGFIKKRSFTTKIILNFCSSIHPPLVEFARFLF 181
           S   TL LLR C+T  ++NQIHAR+IT+GFIK    TTK++ +F SS   PL EFAR++F
Sbjct: 70  STQSTLLLLRKCKTLNDVNQIHARMITTGFIKNTHLTTKLVASFSSSPCTPLTEFARYIF 129

Query: 182 FSQCSQQTHVDIFLWNAVMKSFS 250
           F   + +   D FLWNA++K++S
Sbjct: 130 FKYHAFREKKDPFLWNAIIKTYS 152


>ref|XP_007052071.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
           [Theobroma cacao] gi|508704332|gb|EOX96228.1|
           Pentatricopeptide repeat (PPR) superfamily protein,
           putative [Theobroma cacao]
          Length = 637

 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 45/86 (52%), Positives = 60/86 (69%), Gaps = 3/86 (3%)
 Frame = +2

Query: 2   SNLPTLHLLRNCRTQREINQIHARIITSGFIKKRSFTTKIILNFCSSIHPPLVEFARFLF 181
           S LPTL LL  C+T  ++NQIHAR+IT+GFI+  + TTKI+L F  S   PLV+FAR +F
Sbjct: 13  SALPTLVLLPKCKTWNDVNQIHARLITTGFIRSLALTTKIVLAFSPSPFCPLVDFARHVF 72

Query: 182 FSQ---CSQQTHVDIFLWNAVMKSFS 250
           F+     S +  +D FLWNA +KS+S
Sbjct: 73  FTHHAFRSPEQEMDPFLWNAAIKSYS 98


>ref|XP_007155354.1| hypothetical protein PHAVU_003G194000g [Phaseolus vulgaris]
           gi|561028708|gb|ESW27348.1| hypothetical protein
           PHAVU_003G194000g [Phaseolus vulgaris]
          Length = 618

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 42/80 (52%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
 Frame = +2

Query: 14  TLHLLRNCRTQREINQIHARIITSGFIKKRSFTTKIILNFCSSIHPPLVEFARFLFFS-Q 190
           T+  L  C T   +NQ+HARIIT+GFIK  +FTT+++L+F SS H PLVEFAR++FF   
Sbjct: 16  TIFSLPKCTTTEHVNQLHARIITTGFIKNPAFTTRLVLSFISSPHEPLVEFARYVFFKHH 75

Query: 191 CSQQTHVDIFLWNAVMKSFS 250
             +    D FLWNAV++S S
Sbjct: 76  AFRHPQDDPFLWNAVIRSHS 95


>ref|XP_002511699.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548879|gb|EEF50368.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 474

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 46/87 (52%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
 Frame = +2

Query: 2   SNLPTLHLLRNCRTQREINQIHARIITSGFIKKRSFTTKIILNFCSSIHPPLVEFARFLF 181
           S L TL L+R C+T  +INQ+HAR+IT+GFIK  S TTKIIL+  SS +  L EFAR+ F
Sbjct: 14  SPLSTLILVRKCKTASDINQVHARMITTGFIKNTSLTTKIILSLSSSPNVALHEFARYFF 73

Query: 182 FSQ----CSQQTHVDIFLWNAVMKSFS 250
           F++       Q   D FLWNAV+K+ S
Sbjct: 74  FTRHAYIIGAQEKEDPFLWNAVIKTHS 100


>gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
          Length = 612

 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 41/82 (50%), Positives = 56/82 (68%), Gaps = 2/82 (2%)
 Frame = +2

Query: 11  PTLHLLRNCRTQREINQIHARIITSGFIKKRSFTTKIILNFCSSIHPPLVEFARFLF--F 184
           PT+ LL +C+   ++N+IHAR+IT+GFIK  + TT+I+L+F  S    L EFARF+F  +
Sbjct: 16  PTIKLLGSCKNSEDVNKIHARLITNGFIKNPNLTTRIVLDFADSRRSYLAEFARFVFHEY 75

Query: 185 SQCSQQTHVDIFLWNAVMKSFS 250
             CS     D FLWNAV+KS S
Sbjct: 76  HVCSNGDFEDPFLWNAVIKSHS 97


>ref|XP_006397715.1| hypothetical protein EUTSA_v10001360mg [Eutrema salsugineum]
           gi|557098788|gb|ESQ39168.1| hypothetical protein
           EUTSA_v10001360mg [Eutrema salsugineum]
          Length = 627

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 4/87 (4%)
 Frame = +2

Query: 2   SNLPTLHLLRNCRTQREINQIHARIITSGFIKKRSFTTKIILNFCSSIHPPLVEFARFLF 181
           S  PT+ LL +C+T  ++N+IHAR+IT+GFIK  + TT+I+L F +S  P L EFAR +F
Sbjct: 25  STSPTIQLLGSCKTSDDVNKIHARLITTGFIKNPNLTTRIVLAFAASRRPFLAEFARCVF 84

Query: 182 --FSQCSQQTH--VDIFLWNAVMKSFS 250
             +  CS       D FLWNAV+KS S
Sbjct: 85  NEYHACSSSPGEVEDPFLWNAVIKSHS 111


>gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
          Length = 617

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 6/86 (6%)
 Frame = +2

Query: 11  PTLHLLRNCRTQREINQIHARIITSGFIKKRSFTTKIILNFCSSIHPPLVEFARFLFFSQ 190
           PT+ LL +C+   ++N+IHAR++T+GFIK  + TT+I+L F +S  P  VEFARF+F   
Sbjct: 16  PTIKLLGSCKNSEDVNKIHARLVTNGFIKNPNLTTRIVLAFAASRRPYXVEFARFVFHEY 75

Query: 191 CSQQ------THVDIFLWNAVMKSFS 250
             +          D +LWNAV+KS S
Sbjct: 76  XIRSFSPGGGDXEDXYLWNAVIKSHS 101


>gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
          Length = 617

 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 5/85 (5%)
 Frame = +2

Query: 11  PTLHLLRNCRTQREINQIHARIITSGFIKKRSFTTKIILNFCSSIHPPLVEFARFLF--F 184
           PT+ LL  C+T  ++++IHAR+IT+G IK  + +T+I+L F +S  P L EFAR +F  +
Sbjct: 17  PTIQLLGRCKTSEDVSKIHARLITTGLIKNSNLSTRIVLAFAASPRPYLAEFARLVFREY 76

Query: 185 SQCSQQTHVDI---FLWNAVMKSFS 250
             CS     ++   FLWNAV+KS S
Sbjct: 77  HVCSSSPGGEVEDPFLWNAVIKSHS 101


>ref|XP_006296085.1| hypothetical protein CARUB_v10025235mg [Capsella rubella]
           gi|482564793|gb|EOA28983.1| hypothetical protein
           CARUB_v10025235mg [Capsella rubella]
          Length = 607

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 5/85 (5%)
 Frame = +2

Query: 11  PTLHLLRNCRTQREINQIHARIITSGFIKKRSFTTKIILNFCSSIHPPLVEFARFLF--F 184
           PT+ LL  C+T  ++++IHAR+IT+G IK  + +T+I+L F +S  P L EFAR +F  +
Sbjct: 7   PTIQLLGRCKTSEDVSKIHARLITTGLIKNSNLSTRIVLAFAASPRPFLAEFARLVFREY 66

Query: 185 SQCSQQTHVDI---FLWNAVMKSFS 250
             C+     ++   FLWNAV+KS S
Sbjct: 67  HVCASSPGGEVKDPFLWNAVIKSHS 91