BLASTX nr result
ID: Cocculus23_contig00049384
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00049384
(820 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCH50976.1| T4.15 [Malus x robusta] 70 1e-09
gb|AEJ72569.1| putative reverse transcriptase family member [Mal... 66 1e-08
gb|EMT05664.1| hypothetical protein F775_16727 [Aegilops tauschii] 66 2e-08
ref|XP_003571941.1| PREDICTED: RNA-directed DNA polymerase from ... 66 2e-08
ref|XP_003581610.1| PREDICTED: uncharacterized protein LOC100840... 65 2e-08
gb|ABB00038.1| reverse transcriptase family member [Glycine max] 64 5e-08
gb|EXC04356.1| DNA-directed RNA polymerase I subunit rpa1 [Morus... 61 6e-07
emb|CBL94165.1| putative reverse transcriptase family member [Ma... 60 1e-06
gb|AAT38756.2| Putative methyltransferase family protein [Solanu... 60 1e-06
gb|AAT40504.2| Polyprotein, putative [Solanum demissum] 60 1e-06
gb|EXB94379.1| E3 ubiquitin-protein ligase UPL6 [Morus notabilis] 59 2e-06
ref|WP_009187176.1| hypothetical protein [Cecembia lonarensis] g... 59 2e-06
gb|EMS50104.1| Retrovirus-related Pol polyprotein LINE-1 [Tritic... 59 3e-06
ref|XP_006361364.1| PREDICTED: uncharacterized protein LOC102596... 58 5e-06
gb|EMS62958.1| Putative SWI/SNF-related matrix-associated actin-... 58 5e-06
emb|CBL94163.1| putative RNA-directed DNA polymerase (Reverse tr... 58 5e-06
ref|WP_008409321.1| hypothetical protein [Bacillus isronensis] g... 57 6e-06
gb|EMT16132.1| hypothetical protein F775_03544 [Aegilops tauschii] 57 8e-06
>emb|CCH50976.1| T4.15 [Malus x robusta]
Length = 986
Score = 69.7 bits (169), Expect = 1e-09
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Frame = -2
Query: 648 KFYKTTTRPAELYRTE**AIKKKMLIN*V*QGKCKF*EGIW*TQKENKKDKRNEYLGN-- 475
KFY+T RPA LY TE A+K + + G + W K RNE +
Sbjct: 844 KFYRTAIRPAMLYGTECWAVKHQHVHK---MGVAEMRMLRWMCGHTRKDKIRNEDIRGKV 900
Query: 474 GSSGLN*R*IRKKSLRWF*HMQRKPLTALVRTADDALTILNNSKGRGRPNITWTEMIKKN 295
G + + + +R+ LRWF H+QR+P A +R D T + +GRGRP T E ++K+
Sbjct: 901 GVAEIQGK-MRENQLRWFGHVQRRPTDAPIRRCDYG-TEVQGRRGRGRPRKTLEETLRKD 958
Query: 294 ITSRHVS*NLALDRVEWRKQIHI 226
+ ++ ++ DR +WR +IHI
Sbjct: 959 LEYLDLTKDMTQDRAQWRSKIHI 981
>gb|AEJ72569.1| putative reverse transcriptase family member [Malus domestica]
Length = 212
Score = 66.2 bits (160), Expect = 1e-08
Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 5/146 (3%)
Frame = -2
Query: 648 KFYKTTTRPAELYRTE**AIKKKMLIN*V*QGKCKF*EGIW*TQKENKKDKRNEYLGNGS 469
KFY+TT RPA LY TE A+K + + G + W K RNE + G
Sbjct: 70 KFYRTTIRPAMLYGTECWAVKYQHVHK---MGVAEMRMLRWMCGHTRKDKIRNEDI-RGK 125
Query: 468 SGL-----N*R*IRKKSLRWF*HMQRKPLTALVRTADDALTILNNSKGRGRPNITWTEMI 304
G+ N +R+ LRWF H+QR+P A +R D T + +GRGRP T E +
Sbjct: 126 VGVAEIEGN---MRENRLRWFGHVQRRPTYAPIRRCDYE-TEVQGRRGRGRPRKTLEETL 181
Query: 303 KKNITSRHVS*NLALDRVEWRKQIHI 226
+K++ ++ ++ DR +W +IHI
Sbjct: 182 RKDLGYLDLTKDMTQDRAQWCSKIHI 207
>gb|EMT05664.1| hypothetical protein F775_16727 [Aegilops tauschii]
Length = 650
Score = 65.9 bits (159), Expect = 2e-08
Identities = 50/153 (32%), Positives = 73/153 (47%), Gaps = 4/153 (2%)
Frame = -2
Query: 672 RYHKKSLRKFYKTTTRPAELYRTE**AIKKKMLIN*V*QGKCKF*EGIW*TQKENKKDKR 493
R +K KFY+T RPA LY E K++ + G + W K R
Sbjct: 502 RVPQKLKGKFYRTAARPAMLYGAECWPTKRRHVQQ---LGVVEMRMLRWMCGHMRKDRVR 558
Query: 492 NEYLGNGSSGLN*R*IRKK----SLRWF*HMQRKPLTALVRTADDALTILNNSKGRGRPN 325
N+ + + G I +K LRWF H+QR+P A V + N +GRGRPN
Sbjct: 559 NDDIRDRVGGAP---IEEKLVQHCLRWFGHIQRRPPEAPVHSG-RLKRAENVKRGRGRPN 614
Query: 324 ITWTEMIKKNITSRHVS*NLALDRVEWRKQIHI 226
+TW E +K+++ ++ LALDR W+ IH+
Sbjct: 615 LTWEESVKRDLKDWSITKELALDRGAWKLAIHV 647
>ref|XP_003571941.1| PREDICTED: RNA-directed DNA polymerase from mobile element
jockey-like [Brachypodium distachyon]
Length = 307
Score = 65.9 bits (159), Expect = 2e-08
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 2/151 (1%)
Frame = -2
Query: 672 RYHKKSLRKFYKTTTRPAELYRTE**AIKKKMLIN*V*QGKCKF*EGIW*TQKENKKDKR 493
R +K KFY+T RPA LY E K++ + G + W + R
Sbjct: 159 RVPQKLKGKFYRTAIRPAILYGAECWPTKRRHVQQ---LGVAEMRMLRWMCGHTRRDHVR 215
Query: 492 NEYLGN--GSSGLN*R*IRKKSLRWF*HMQRKPLTALVRTADDALTILNNSKGRGRPNIT 319
N+ + + G + + + ++ + LRWF H+QR+PL A V + N +GRGRPN+T
Sbjct: 216 NDDIRDRVGVAPIAEKLVQHR-LRWFGHIQRRPLDAPVHSGR-LKRAGNVKRGRGRPNLT 273
Query: 318 WTEMIKKNITSRHVS*NLALDRVEWRKQIHI 226
W E +K+++ +++ LA++R W+ IH+
Sbjct: 274 WEESVKRDLKGWNITKELAMNRTAWKLAIHV 304
>ref|XP_003581610.1| PREDICTED: uncharacterized protein LOC100840703 [Brachypodium
distachyon]
Length = 567
Score = 65.5 bits (158), Expect = 2e-08
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 2/151 (1%)
Frame = -2
Query: 672 RYHKKSLRKFYKTTTRPAELYRTE**AIKKKMLIN*V*QGKCKF*EGIW*TQKENKKDKR 493
R +K KFY+T RPA LY E K++ + G + W + R
Sbjct: 419 RVPQKLKGKFYRTAIRPAILYGAECWPTKRRHVQQ---LGVAEMRMLRWMCGHTRRDRVR 475
Query: 492 NEYLGN--GSSGLN*R*IRKKSLRWF*HMQRKPLTALVRTADDALTILNNSKGRGRPNIT 319
N+ + + G + + + ++ + LRWF H+QR+PL A V + N +GRGRPN+T
Sbjct: 476 NDDIRDRVGVAPIAEKLVQHR-LRWFGHIQRRPLDAPVHSGR-LKRAGNVKRGRGRPNLT 533
Query: 318 WTEMIKKNITSRHVS*NLALDRVEWRKQIHI 226
W E +K+++ +++ LA++R W+ IH+
Sbjct: 534 WEESVKRDLKGWNITKELAMNRAAWKLAIHV 564
>gb|ABB00038.1| reverse transcriptase family member [Glycine max]
Length = 377
Score = 64.3 bits (155), Expect = 5e-08
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
Frame = -2
Query: 648 KFYKTTTRPAELYRTE**AIKKKMLIN*V*QGKCKF*EGIW*TQKENKKDKRNEYLGN-- 475
KFY+T RP LY TE A+K + G + W K + RNE +
Sbjct: 236 KFYRTAVRPTILYGTECWAVKSQHENK---VGVAEMRMLRWMCGKTRQDKIRNEAIRERV 292
Query: 474 GSSGLN*R*IRKKSLRWF*HMQRKPLTALVRTADDALTILNNSKGRGRPNITWTEMIKKN 295
G + + + + + LRWF H++R+P+ +++R D + +GRGRP T E+IKK+
Sbjct: 293 GVAPIVEKMVENR-LRWFGHVERRPVDSVLRRVDQ-MERRQTIRGRGRPKKTIREVIKKD 350
Query: 294 ITSRHVS*NLALDRVEWRKQIHI 226
+ + ++ LDR WRK IH+
Sbjct: 351 LEINGLDRSMVLDRTLWRKLIHV 373
>gb|EXC04356.1| DNA-directed RNA polymerase I subunit rpa1 [Morus notabilis]
Length = 1770
Score = 60.8 bits (146), Expect = 6e-07
Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -2
Query: 447 IRKKSLRWF*HMQRKPLTALVRTADDALTILNNSKGRGRPNITWTEMIKKNITSRHVS*N 268
+R+ LRW+ H+QR+PL A VR +D L I N +GRGRP ITWTE+++K+I + +
Sbjct: 1241 VREGRLRWYGHVQRRPLEAPVRAWEDIL-IPNTRRGRGRPRITWTEVVRKDILDLGLQES 1299
Query: 267 LALDR-VEWRKQI 232
L +R VE K++
Sbjct: 1300 LISNRAVEEAKRL 1312
>emb|CBL94165.1| putative reverse transcriptase family member [Malus domestica]
Length = 163
Score = 60.1 bits (144), Expect = 1e-06
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 2/147 (1%)
Frame = -2
Query: 660 KSLRKFYKTTTRPAELYRTE**AIKKKMLIN*V*QGKCKF*EGIW*TQKENKKDK--RNE 487
K KFY+T RPA LY E A+K + ++ + + + G+ + +KDK +
Sbjct: 18 KLKEKFYRTAIRPAMLYDIECWAVKHQH-VHKMGVAEIRMLRGMC---RHTRKDKIVNED 73
Query: 486 YLGNGSSGLN*R*IRKKSLRWF*HMQRKPLTALVRTADDALTILNNSKGRGRPNITWTEM 307
G +R+ LRWF H+QR P A VR + T + +GRGRP T E
Sbjct: 74 IRGKVGVAEVEGKMRENRLRWFGHVQRMPTDAPVRRCNYE-TEVRGRRGRGRPRKTLEET 132
Query: 306 IKKNITSRHVS*NLALDRVEWRKQIHI 226
++K++ ++ ++ +R +WR +IHI
Sbjct: 133 LRKDLEYLDLTEDMTQNRAQWRSRIHI 159
>gb|AAT38756.2| Putative methyltransferase family protein [Solanum demissum]
Length = 828
Score = 60.1 bits (144), Expect = 1e-06
Identities = 26/74 (35%), Positives = 46/74 (62%)
Frame = -2
Query: 447 IRKKSLRWF*HMQRKPLTALVRTADDALTILNNSKGRGRPNITWTEMIKKNITSRHVS*N 268
+R+ LRWF H++R+ A VR + + + +GRGRP W E+I++++ H++ +
Sbjct: 34 LREARLRWFGHVKRRSADAAVRRCE-VMVVEGTRRGRGRPKKYWEEVIRQDLAMLHITED 92
Query: 267 LALDRVEWRKQIHI 226
+ LDR EWR +I +
Sbjct: 93 MTLDRKEWRSRIKL 106
>gb|AAT40504.2| Polyprotein, putative [Solanum demissum]
Length = 868
Score = 59.7 bits (143), Expect = 1e-06
Identities = 26/74 (35%), Positives = 46/74 (62%)
Frame = -2
Query: 447 IRKKSLRWF*HMQRKPLTALVRTADDALTILNNSKGRGRPNITWTEMIKKNITSRHVS*N 268
+R+ LRWF H++R+ A VR + + + +GRGRP W E+I++++ H++ +
Sbjct: 617 LREARLRWFGHVKRRSADAPVRRCE-VMVVEGTRRGRGRPKKYWEEVIRQDLAMLHITED 675
Query: 267 LALDRVEWRKQIHI 226
+ LDR EWR +I +
Sbjct: 676 MTLDRKEWRSRIKV 689
>gb|EXB94379.1| E3 ubiquitin-protein ligase UPL6 [Morus notabilis]
Length = 1413
Score = 59.3 bits (142), Expect = 2e-06
Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Frame = -2
Query: 648 KFYKTTTRPAELYRTE**AIKKKMLIN*V*QGKCKF*EGIW*TQKENKKDKRNEYLGN-- 475
KFY+T RPA LY ++ AIK++ + + W + + +NE + +
Sbjct: 957 KFYRTVIRPAMLYGSKCWAIKRQHISK---MSVAEMRMLRWMSGQTRMDRIKNEVIRSKV 1013
Query: 474 GSSGLN*R*IRKKSLRWF*HMQRKPLTALVRTADDALTILNNSKGRGRPNITWTEMI 304
G + + + +R+ LRWF H+QR+PL A VR +D L I N +GRGR ITWTE++
Sbjct: 1014 GVAPIEDK-VREGRLRWFGHVQRRPLEAPVRAWEDIL-IPNTRRGRGRLRITWTEIL 1068
>ref|WP_009187176.1| hypothetical protein [Cecembia lonarensis]
gi|405551390|gb|EKB47241.1| hypothetical protein
B879_04163 [Cecembia lonarensis LW9]
Length = 133
Score = 58.9 bits (141), Expect = 2e-06
Identities = 29/74 (39%), Positives = 45/74 (60%)
Frame = -2
Query: 447 IRKKSLRWF*HMQRKPLTALVRTADDALTILNNSKGRGRPNITWTEMIKKNITSRHVS*N 268
+R+ LRWF H+QR+P A VR D T + +GRGRP T E ++K++ ++ +
Sbjct: 56 MRENRLRWFGHVQRRPTDAPVRRCDYG-TEVRGRRGRGRPRKTLEETLRKDLEYLDLTED 114
Query: 267 LALDRVEWRKQIHI 226
+ DR +WR +IHI
Sbjct: 115 MTQDRAQWRSRIHI 128
>gb|EMS50104.1| Retrovirus-related Pol polyprotein LINE-1 [Triticum urartu]
Length = 3154
Score = 58.5 bits (140), Expect = 3e-06
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Frame = -2
Query: 648 KFYKTTTRPAELYRTE**AIKKKMLIN*V*QGKCKF*EGIW*TQKENKKDKRNEYLGN-- 475
KFY+T RPA LY E K++ + G + W K RN+ + +
Sbjct: 2341 KFYRTAVRPAMLYGVECWPTKRRHVQQ---LGVAEMRMLRWMCGHTRKDRVRNDDIRDRV 2397
Query: 474 GSSGLN*R*IRKKSLRWF*HMQRKPLTALVRTADDALTILNNSKGRGRPNITWTEMIKKN 295
G + + + ++ + LRWF H+QR+P A V + N +GRGRPN+TW E +K++
Sbjct: 2398 GVAPIEEKLVQHR-LRWFGHIQRRPPEAPVHSGR-LKRAENVKRGRGRPNLTWEESVKRD 2455
Query: 294 ITSRHVS*NLALDRV 250
+ ++ LA+DRV
Sbjct: 2456 LKDWSITKELAMDRV 2470
>ref|XP_006361364.1| PREDICTED: uncharacterized protein LOC102596609 [Solanum tuberosum]
Length = 278
Score = 57.8 bits (138), Expect = 5e-06
Identities = 26/75 (34%), Positives = 46/75 (61%)
Frame = -2
Query: 447 IRKKSLRWF*HMQRKPLTALVRTADDALTILNNSKGRGRPNITWTEMIKKNITSRHVS*N 268
+R+ LRWF H++R+ A VR + L + +GRGRP W E+I++++ H++ +
Sbjct: 204 LREARLRWFGHVRRRCADAPVRRCE-GLVVEGTRRGRGRPKKYWGEVIRQDLAQLHITED 262
Query: 267 LALDRVEWRKQIHIL 223
+ LDR WR +I ++
Sbjct: 263 MTLDRKAWRSRIKVV 277
>gb|EMS62958.1| Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 1 [Triticum
urartu]
Length = 1028
Score = 57.8 bits (138), Expect = 5e-06
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 2/142 (1%)
Frame = -2
Query: 672 RYHKKSLRKFYKTTTRPAELYRTE**AIKKKMLIN*V*QGKCKF*EGIW*TQKENKKDKR 493
R +K KFY+T RPA LY E K++ + G + W K R
Sbjct: 619 RVPQKLKGKFYRTAVRPAMLYGAECWPTKRRHVQQ---LGVAEMRMLRWMCGHTRKDRVR 675
Query: 492 NEYLGN--GSSGLN*R*IRKKSLRWF*HMQRKPLTALVRTADDALTILNNSKGRGRPNIT 319
N+ + + G + + + ++ + LRWF H+QR+P A V + N +GRGRPN+T
Sbjct: 676 NDDIRDRVGVAPIEEKLVQHR-LRWFGHIQRRPPEAPVHSGR-LKRAENVKRGRGRPNLT 733
Query: 318 WTEMIKKNITSRHVS*NLALDR 253
W E +K+++ ++ LA+DR
Sbjct: 734 WEESVKRDLKDWSITKELAMDR 755
>emb|CBL94163.1| putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus
domestica]
Length = 622
Score = 57.8 bits (138), Expect = 5e-06
Identities = 28/74 (37%), Positives = 44/74 (59%)
Frame = -2
Query: 447 IRKKSLRWF*HMQRKPLTALVRTADDALTILNNSKGRGRPNITWTEMIKKNITSRHVS*N 268
+R+ LRWF H+QR+P A +R D T + KGRGRP T E ++K++ + +
Sbjct: 545 MRENWLRWFGHVQRRPTDAPIRRCDYG-TKVQGRKGRGRPRKTLEETLRKDLEYLDLMED 603
Query: 267 LALDRVEWRKQIHI 226
+ DR +WR +IH+
Sbjct: 604 MTQDRAQWRSKIHV 617
>ref|WP_008409321.1| hypothetical protein [Bacillus isronensis]
gi|405383715|gb|EKB43273.1| hypothetical protein
B857_03969 [Bacillus isronensis B3W22]
Length = 109
Score = 57.4 bits (137), Expect = 6e-06
Identities = 28/74 (37%), Positives = 44/74 (59%)
Frame = -2
Query: 447 IRKKSLRWF*HMQRKPLTALVRTADDALTILNNSKGRGRPNITWTEMIKKNITSRHVS*N 268
+R+ LRWF H+QR P A +R D T + +GRGRP T E ++K++ ++ +
Sbjct: 32 MRENRLRWFGHVQRMPTDAPIRRCDYG-TEVQGRRGRGRPRKTLEETLRKDLEYLDLTED 90
Query: 267 LALDRVEWRKQIHI 226
+ DR +WR +IHI
Sbjct: 91 MTQDRAQWRSKIHI 104
>gb|EMT16132.1| hypothetical protein F775_03544 [Aegilops tauschii]
Length = 1062
Score = 57.0 bits (136), Expect = 8e-06
Identities = 28/68 (41%), Positives = 42/68 (61%)
Frame = -2
Query: 432 LRWF*HMQRKPLTALVRTADDALTILNNSKGRGRPNITWTEMIKKNITSRHVS*NLALDR 253
LRWF H+QR+P A V + + N +GRGRPN+TW E K+++ +++ LA+DR
Sbjct: 300 LRWFGHIQRRPPEAPVHSGR-LKCVGNVKRGRGRPNLTWEESGKRDLKDWNITKELAMDR 358
Query: 252 VEWRKQIH 229
W+ IH
Sbjct: 359 GAWKLAIH 366