BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00049085
         (286 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI37206.3| unnamed protein product [Vitis vinifera]               69   9e-10
ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containi...    69   9e-10
ref|XP_007039590.1| Pentatricopeptide (PPR) repeat-containing pr...    68   1e-09
ref|XP_006385606.1| pentatricopeptide repeat-containing family p...    66   4e-09
ref|XP_006306842.1| hypothetical protein CARUB_v10008386mg [Caps...    64   2e-08
gb|AAF81338.1|AC007767_18 Contains similarity to a hypothetical ...    64   2e-08
ref|NP_564401.1| pentatricopeptide repeat-containing protein [Ar...    64   2e-08
gb|EXC26722.1| hypothetical protein L484_023336 [Morus notabilis]      61   1e-07
ref|XP_006415198.1| hypothetical protein EUTSA_v10006886mg [Eutr...    60   2e-07
ref|XP_002890989.1| predicted protein [Arabidopsis lyrata subsp....    59   7e-07
ref|XP_007160511.1| hypothetical protein PHAVU_002G328000g [Phas...    57   3e-06
ref|XP_004242257.1| PREDICTED: pentatricopeptide repeat-containi...    57   3e-06
ref|XP_006356525.1| PREDICTED: pentatricopeptide repeat-containi...    55   8e-06

>emb|CBI37206.3| unnamed protein product [Vitis vinifera]
          Length = 664

 Score = 68.6 bits (166), Expect = 9e-10
 Identities = 33/58 (56%), Positives = 44/58 (75%)
 Frame = +3

Query: 111 DSELVLGYLSQRRLREARDVLDKMPQRGKHGGVVVWTSLLSKYVRDGFVNEARELFDL 284
           D   +L  LSQ+RLREAR +LD+MP RG    VV WTSLLSK+ ++GF++EAR LF++
Sbjct: 44  DDSQILECLSQQRLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEI 101


>ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containing protein At1g32415,
           mitochondrial-like [Vitis vinifera]
          Length = 743

 Score = 68.6 bits (166), Expect = 9e-10
 Identities = 33/58 (56%), Positives = 44/58 (75%)
 Frame = +3

Query: 111 DSELVLGYLSQRRLREARDVLDKMPQRGKHGGVVVWTSLLSKYVRDGFVNEARELFDL 284
           D   +L  LSQ+RLREAR +LD+MP RG    VV WTSLLSK+ ++GF++EAR LF++
Sbjct: 44  DDSQILECLSQQRLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEI 101


>ref|XP_007039590.1| Pentatricopeptide (PPR) repeat-containing protein, putative
           [Theobroma cacao] gi|508776835|gb|EOY24091.1|
           Pentatricopeptide (PPR) repeat-containing protein,
           putative [Theobroma cacao]
          Length = 734

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 34/59 (57%), Positives = 44/59 (74%)
 Frame = +3

Query: 108 HDSELVLGYLSQRRLREARDVLDKMPQRGKHGGVVVWTSLLSKYVRDGFVNEARELFDL 284
           +DS+L   +LS  R +E R++LDKMPQR  H  VV  TSLLSK+ RDGF+NEA+ LFD+
Sbjct: 36  NDSQLFY-FLSNHRFQEVRNLLDKMPQRSNHARVVHLTSLLSKFSRDGFINEAKALFDI 93


>ref|XP_006385606.1| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|550342735|gb|ERP63403.1|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 744

 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 29/58 (50%), Positives = 44/58 (75%)
 Frame = +3

Query: 111 DSELVLGYLSQRRLREARDVLDKMPQRGKHGGVVVWTSLLSKYVRDGFVNEARELFDL 284
           D   +L  LSQ++L++AR++LDK P+R +H  +  WTSLL+KY R GF++E+R LFD+
Sbjct: 47  DDSQLLCMLSQQKLQQARNLLDKFPERSRHSRIAHWTSLLTKYSRIGFIDESRVLFDI 104


>ref|XP_006306842.1| hypothetical protein CARUB_v10008386mg [Capsella rubella]
           gi|482575553|gb|EOA39740.1| hypothetical protein
           CARUB_v10008386mg [Capsella rubella]
          Length = 759

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 4/82 (4%)
 Frame = +3

Query: 51  SLSRSQFRFWAIRWHGSY----SHDSELVLGYLSQRRLREARDVLDKMPQRGKHGGVVVW 218
           S+S  +F   AI  +GSY    S++  L+L  LS+  L  AR +LDK+PQRG    V+ W
Sbjct: 21  SISCRRFYGTAISNYGSYRRGFSNEEALILRRLSEGGLVHARHLLDKIPQRGSVSRVIYW 80

Query: 219 TSLLSKYVRDGFVNEARELFDL 284
           TSLL+K+ + G+++EAR LF++
Sbjct: 81  TSLLTKFTKAGYLDEARVLFEV 102


>gb|AAF81338.1|AC007767_18 Contains similarity to a hypothetical protein F19I3.26 gi|7485810
           from Arabidopsis thaliana BAC F19I3 gb|AC004238. It
           contains a PPR repeat domain PF|01535. ESTs gb|AV539170,
           gb|AV551571, gb|AA597781, gb|AV544524, gb|AV531577 and
           gb|AV533492 come from this gene [Arabidopsis thaliana]
          Length = 864

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 4/68 (5%)
 Frame = +3

Query: 93  HGSY----SHDSELVLGYLSQRRLREARDVLDKMPQRGKHGGVVVWTSLLSKYVRDGFVN 260
           +GSY    S++  L+L  LS+  L  AR +LDK+PQRG    VV WTSLLSKY + G+++
Sbjct: 138 YGSYRRGFSNEEALILRRLSEGGLVHARHLLDKIPQRGSINRVVYWTSLLSKYAKTGYLD 197

Query: 261 EARELFDL 284
           EAR LF++
Sbjct: 198 EARVLFEV 205


>ref|NP_564401.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|193806407|sp|P0C7R0.1|PPR69_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g32415, mitochondrial; Flags: Precursor
           gi|332193363|gb|AEE31484.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 4/68 (5%)
 Frame = +3

Query: 93  HGSY----SHDSELVLGYLSQRRLREARDVLDKMPQRGKHGGVVVWTSLLSKYVRDGFVN 260
           +GSY    S++  L+L  LS+  L  AR +LDK+PQRG    VV WTSLLSKY + G+++
Sbjct: 35  YGSYRRGFSNEEALILRRLSEGGLVHARHLLDKIPQRGSINRVVYWTSLLSKYAKTGYLD 94

Query: 261 EARELFDL 284
           EAR LF++
Sbjct: 95  EARVLFEV 102


>gb|EXC26722.1| hypothetical protein L484_023336 [Morus notabilis]
          Length = 763

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 31/58 (53%), Positives = 39/58 (67%)
 Frame = +3

Query: 111 DSELVLGYLSQRRLREARDVLDKMPQRGKHGGVVVWTSLLSKYVRDGFVNEARELFDL 284
           D   +   LSQ RL +AR +LDK+  R  H  VV WTSLL+KY + G+VNEAR LFD+
Sbjct: 58  DQSQLFECLSQNRLHDARKLLDKLSGRDGHSCVVHWTSLLTKYSKCGWVNEARNLFDI 115


>ref|XP_006415198.1| hypothetical protein EUTSA_v10006886mg [Eutrema salsugineum]
           gi|557092969|gb|ESQ33551.1| hypothetical protein
           EUTSA_v10006886mg [Eutrema salsugineum]
          Length = 760

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
 Frame = +3

Query: 81  AIRWHGSYSHDSELVLGYLSQRRLREARDVLDKMPQRGKH-GGVVVWTSLLSKYVRDGFV 257
           AI  +G +S++  L+L  LS+  L  AR +LD++PQRG     V+ WTSLL+KY + G++
Sbjct: 31  AISSYGGFSNEEALILRRLSEGGLVHARHLLDRVPQRGSSISRVIYWTSLLTKYAKAGYL 90

Query: 258 NEARELFDL 284
            +AR LF++
Sbjct: 91  EQARALFEV 99


>ref|XP_002890989.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297336831|gb|EFH67248.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 792

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
 Frame = +3

Query: 42  LHLSLSRSQFRFWAIRWHG---SYSHDSELVLGYLSQRRLREARDVLDKMPQRGKHGGVV 212
           L LS S S  RF+   +      +S++  L+L  LS+  L  AR +LDK+PQRG    V+
Sbjct: 49  LSLSSSISCRRFYGSNYGSHRRGFSNEEALILRRLSEGGLVHARHLLDKIPQRGSISRVI 108

Query: 213 VWTSLLSKYVRDGFVNEARELFDL 284
             TSLL+KY + G+++EAR LF++
Sbjct: 109 YCTSLLTKYAKAGYLDEARVLFEV 132


>ref|XP_007160511.1| hypothetical protein PHAVU_002G328000g [Phaseolus vulgaris]
           gi|561033926|gb|ESW32505.1| hypothetical protein
           PHAVU_002G328000g [Phaseolus vulgaris]
          Length = 691

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 28/54 (51%), Positives = 38/54 (70%)
 Frame = +3

Query: 120 LVLGYLSQRRLREARDVLDKMPQRGKHGGVVVWTSLLSKYVRDGFVNEARELFD 281
           ++ GY+  RRLR+AR + D MPQ+     VV W ++LS YVR G V+EARE+FD
Sbjct: 42  MLSGYVRNRRLRDARVLFDSMPQKD----VVSWNAMLSGYVRSGHVDEAREVFD 91


>ref|XP_004242257.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Solanum lycopersicum]
          Length = 1224

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 28/65 (43%), Positives = 40/65 (61%)
 Frame = +3

Query: 84  IRWHGSYSHDSELVLGYLSQRRLREARDVLDKMPQRGKHGGVVVWTSLLSKYVRDGFVNE 263
           + W+G       L+ GY+  R ++EAR+V DKMPQR     V+ WT+++  YV +GFV E
Sbjct: 600 VSWNG-------LISGYVKNRMVKEAREVFDKMPQR----NVISWTAMVRGYVEEGFVEE 648

Query: 264 ARELF 278
           A  LF
Sbjct: 649 AEALF 653


>ref|XP_006356525.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Solanum tuberosum]
          Length = 704

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 28/65 (43%), Positives = 39/65 (60%)
 Frame = +3

Query: 84  IRWHGSYSHDSELVLGYLSQRRLREARDVLDKMPQRGKHGGVVVWTSLLSKYVRDGFVNE 263
           + W+G       L+ GY+  R ++EAR V DKMPQR     V+ WT+++  YV +GFV E
Sbjct: 80  VSWNG-------LISGYVKNRMVKEARKVFDKMPQR----NVISWTAMVRGYVEEGFVEE 128

Query: 264 ARELF 278
           A  LF
Sbjct: 129 AETLF 133