BLASTX nr result
ID: Cocculus23_contig00048240
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00048240
(389 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ... 79 1e-17
gb|ABR16288.1| unknown [Picea sitchensis] 70 1e-13
gb|ADN34073.1| retrotransposon protein [Cucumis melo subsp. melo] 69 1e-13
emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera] 66 2e-13
emb|CAN74029.1| hypothetical protein VITISV_013540 [Vitis vinifera] 73 4e-13
ref|XP_006582766.1| PREDICTED: uncharacterized mitochondrial pro... 72 4e-13
gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sat... 71 5e-13
emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera] 72 6e-13
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group... 70 6e-13
emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group] 70 6e-13
gb|AAT47077.1| putative polyprotein [Oryza sativa Japonica Group] 70 6e-13
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera] 64 9e-13
emb|CAN66512.1| hypothetical protein VITISV_026972 [Vitis vinifera] 75 1e-12
gb|ABA95820.1| retrotransposon protein, putative, unclassified [... 69 1e-12
ref|XP_006582625.1| PREDICTED: uncharacterized mitochondrial pro... 69 2e-12
ref|XP_006595263.1| PREDICTED: uncharacterized mitochondrial pro... 70 2e-12
emb|CAN63536.1| hypothetical protein VITISV_002860 [Vitis vinifera] 72 3e-12
dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana] gi... 59 4e-12
gb|AAG51247.1|AC055769_6 copia-type polyprotein, putative; 28768... 59 4e-12
gb|AAF25964.2|AC017118_1 F6N18.1 [Arabidopsis thaliana] 59 4e-12
>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1333
Score = 79.3 bits (194), Expect(3) = 1e-17
Identities = 42/78 (53%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Frame = -1
Query: 293 DFKESVMKTFEMTDLSLRHYFLGVEVIQDSYGIFIC*KKYVDD*LKKFSKLNCKPAKT-- 120
DFK ++M+ FEM+DL L YFLG+EVIQD GIFI KKY +D LKKF +NC+ A T
Sbjct: 1029 DFKSNMMRNFEMSDLGLLKYFLGLEVIQDKDGIFISQKKYAEDLLKKFQMMNCEVATTPM 1088
Query: 119 QFNAKFTLDDGEEKIGEK 66
N K DG EK K
Sbjct: 1089 NINEKLQRADGTEKANPK 1106
Score = 33.5 bits (75), Expect(3) = 1e-17
Identities = 17/28 (60%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 388 TLYVKNH-KNEFLIRC*YVDDMIYTSSS 308
TLY+K +EFL+ C YVDDMIY SS
Sbjct: 996 TLYLKKQGTDEFLLVCLYVDDMIYIGSS 1023
Score = 21.9 bits (45), Expect(3) = 1e-17
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -2
Query: 43 SHVRPDLTFVVSLI 2
+H RPD+ F VS++
Sbjct: 1119 THTRPDIAFSVSVV 1132
>gb|ABR16288.1| unknown [Picea sitchensis]
Length = 363
Score = 70.5 bits (171), Expect(2) = 1e-13
Identities = 33/61 (54%), Positives = 40/61 (65%)
Frame = -1
Query: 302 TYEDFKESVMKTFEMTDLSLRHYFLGVEVIQDSYGIFIC*KKYVDD*LKKFSKLNCKPAK 123
T + FK ++ K FEMTDL L +YFLG+EV Q GIFIC KY D LK+F +NC P
Sbjct: 190 TIDMFKSAMKKEFEMTDLGLMNYFLGIEVTQKDKGIFICQSKYARDVLKRFRMINCSPVS 249
Query: 122 T 120
T
Sbjct: 250 T 250
Score = 31.6 bits (70), Expect(2) = 1e-13
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -2
Query: 388 TLYVK-NHKNEFLIRC*YVDDMIYTSS 311
TLY K N + + LI C YVDD+IYT +
Sbjct: 162 TLYTKVNEQGQILIVCLYVDDLIYTGN 188
>gb|ADN34073.1| retrotransposon protein [Cucumis melo subsp. melo]
Length = 479
Score = 68.6 bits (166), Expect(2) = 1e-13
Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Frame = -1
Query: 299 YEDFKESVMKTFEMTDLSLRHYFLGVEVIQDSYGIFIC*KKYVDD*LKKFSKLNCKPAKT 120
+E+FK+S+M FEM DL + HYFLG+EVIQ GIFI KKY + L +F NC A T
Sbjct: 303 FEEFKQSMMAEFEMIDLGMMHYFLGIEVIQSVAGIFINQKKYALEILDRFQMENCNSATT 362
Query: 119 --QFNAKFTLDDGEEKI 75
+ N K T D +K+
Sbjct: 363 PVEPNLKLTKDHEGKKV 379
Score = 33.1 bits (74), Expect(2) = 1e-13
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = -2
Query: 388 TLYVK-NHKNEFLIRC*YVDDMIYTSS 311
TL++K H N+ LI C YVDD+IYT +
Sbjct: 272 TLFIKFQHPNKILIVCLYVDDLIYTGN 298
>emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]
Length = 1430
Score = 65.9 bits (159), Expect(3) = 2e-13
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Frame = -1
Query: 293 DFKESVMKTFEMTDLSLRHYFLGVEVIQDSYGIFIC*KKYVDD*LKKFSKLNCKPAKTQF 114
+FK + K FEM+DL L H+FLG+EV Q G+F+ +KY D LKKF+ LNCK
Sbjct: 1129 EFKACMKKKFEMSDLGLLHFFLGLEVKQVEDGVFVSQRKYAVDLLKKFNMLNCKVVAIPM 1188
Query: 113 NA--KFTLDDGEEK 78
N+ K +DG E+
Sbjct: 1189 NSNEKLQAEDGTER 1202
Score = 33.1 bits (74), Expect(3) = 2e-13
Identities = 17/27 (62%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -2
Query: 385 LYVKNH-KNEFLIRC*YVDDMIYTSSS 308
LY+K KN+ LI C YVDDMIY SS
Sbjct: 1097 LYLKRQGKNDLLIICLYVDDMIYMGSS 1123
Score = 21.6 bits (44), Expect(3) = 2e-13
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -2
Query: 43 SHVRPDLTFVVSLI 2
+H RPD+ F V +I
Sbjct: 1219 THTRPDIAFAVGVI 1232
>emb|CAN74029.1| hypothetical protein VITISV_013540 [Vitis vinifera]
Length = 894
Score = 72.8 bits (177), Expect(2) = 4e-13
Identities = 39/78 (50%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = -1
Query: 296 EDFKESVMKTFEMTDLSLRHYFLGVEVIQDSYGIFIC*KKYVDD*LKKFSKLNCKPAKTQ 117
+ FK+ + K FEMTDL YFLG+EV+Q IFIC +KY D LKKF + KP T
Sbjct: 578 QSFKDEMNKVFEMTDLGAMKYFLGMEVMQSCSRIFICQQKYAMDMLKKFKMQDYKPVSTP 637
Query: 116 F--NAKFTLDDGEEKIGE 69
N K + DDG EKI E
Sbjct: 638 MTTNEKLSKDDGSEKINE 655
Score = 27.3 bits (59), Expect(2) = 4e-13
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 388 TLYVKNHKNEFLIRC*YVDDMIYTSS 311
TLYVK + + LI YVDDM+ T +
Sbjct: 547 TLYVKTNDVQLLIISLYVDDMLVTGN 572
>ref|XP_006582766.1| PREDICTED: uncharacterized mitochondrial protein AtMg00810-like
[Glycine max]
Length = 241
Score = 72.4 bits (176), Expect(2) = 4e-13
Identities = 41/83 (49%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Frame = -1
Query: 293 DFKESVMKTFEMTDLSLRHYFLGVEVIQDSYGIFIC*KKYVDD*LKKFSKLNCKPAKTQF 114
+FKE +MKTFEM+DL L YFLG+E+ Q + GIFI KKY + LKKF CKP T
Sbjct: 45 EFKEDMMKTFEMSDLGLMSYFLGIEISQRNEGIFISQKKYTEGLLKKFKMYGCKPVATPV 104
Query: 113 --NAKFTLDDG-EEKIGEKYLEV 54
N K +DG E KY V
Sbjct: 105 ITNEKLQKNDGAPEADASKYRSV 127
Score = 27.7 bits (60), Expect(2) = 4e-13
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 388 TLYVKNHKNEFLIRC*YVDDMIYTSSS 308
TLY+K+ L+ YVDD+IYT ++
Sbjct: 13 TLYIKSQGQYTLLLSLYVDDLIYTRNN 39
>gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108708461|gb|ABF96256.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1167
Score = 70.9 bits (172), Expect(2) = 5e-13
Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Frame = -1
Query: 296 EDFKESVMKTFEMTDLSLRHYFLGVEVIQDSYGIFIC*KKYVDD*LKKFSKLNCKPAKTQ 117
+DFK +M T+EM+DL L HYFLG+EV Q GIFI +KY ++ LKKF NCK T
Sbjct: 886 QDFKRDMMHTYEMSDLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTP 945
Query: 116 F--NAKFTLDDGEEKI 75
N K DG +K+
Sbjct: 946 LLPNEKQKARDGADKV 961
Score = 28.9 bits (63), Expect(2) = 5e-13
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 388 TLYVKNHKNEFLIRC*YVDDMIYTSSS 308
TLY+ + LI YVDD+IYT +S
Sbjct: 855 TLYINKTGTDILIVSLYVDDLIYTGNS 881
>emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera]
Length = 1424
Score = 72.0 bits (175), Expect(2) = 6e-13
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = -1
Query: 296 EDFKESVMKTFEMTDLSLRHYFLGVEVIQDSYGIFIC*KKYVDD*LKKFSKLNCKPAKTQ 117
E F+ +MK +EM+D+ L HYFLG+EV Q+ G+FIC K+YV+ LKKF C T
Sbjct: 1118 EKFRNEMMKKYEMSDMGLLHYFLGIEVYQEEDGVFICQKRYVEHILKKFGMAGCNXVSTP 1177
Query: 116 F--NAKFTLDDGEEKIGEKY 63
N K +DG + + E +
Sbjct: 1178 LVVNEKLRKEDGGKMVDETH 1197
Score = 27.3 bits (59), Expect(2) = 6e-13
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -2
Query: 388 TLYVKNHKN-EFLIRC*YVDDMIYTSS 311
TLYVK+ N + LI YVDD+I+T +
Sbjct: 1086 TLYVKSKDNSQILIVALYVDDLIFTGN 1112
>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108711922|gb|ABF99717.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1335
Score = 70.1 bits (170), Expect(2) = 6e-13
Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Frame = -1
Query: 296 EDFKESVMKTFEMTDLSLRHYFLGVEVIQDSYGIFIC*KKYVDD*LKKFSKLNCKPAKTQ 117
+DFK+ +M T+EM+DL L HYFLG+EV Q GIFI +KY ++ LKKF NCK T
Sbjct: 1054 QDFKKDMMHTYEMSDLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTP 1113
Query: 116 F--NAKFTLDDGEEK 78
N K DG +K
Sbjct: 1114 LLPNEKQKARDGADK 1128
Score = 29.3 bits (64), Expect(2) = 6e-13
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 388 TLYVKNHKNEFLIRC*YVDDMIYTSSS 308
TLYV + LI YVDD+IYT +S
Sbjct: 1023 TLYVNKTGTDILIVSLYVDDLIYTGNS 1049
>emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group]
Length = 1314
Score = 70.1 bits (170), Expect(2) = 6e-13
Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Frame = -1
Query: 296 EDFKESVMKTFEMTDLSLRHYFLGVEVIQDSYGIFIC*KKYVDD*LKKFSKLNCKPAKTQ 117
+DFK+ +M T+EM+DL L HYFLG+EV Q GIFI +KY ++ LKKF NCK T
Sbjct: 1033 QDFKKDMMHTYEMSDLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTP 1092
Query: 116 F--NAKFTLDDGEEK 78
N K DG +K
Sbjct: 1093 LLPNEKQKARDGADK 1107
Score = 29.3 bits (64), Expect(2) = 6e-13
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 388 TLYVKNHKNEFLIRC*YVDDMIYTSSS 308
TLYV + LI YVDD+IYT +S
Sbjct: 1002 TLYVNKTGTDILIVSLYVDDLIYTGNS 1028
>gb|AAT47077.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1136
Score = 70.1 bits (170), Expect(2) = 6e-13
Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Frame = -1
Query: 296 EDFKESVMKTFEMTDLSLRHYFLGVEVIQDSYGIFIC*KKYVDD*LKKFSKLNCKPAKTQ 117
+DFK+ +M T+EM+DL L HYFLG+EV Q GIFI +KY ++ LKKF NCK T
Sbjct: 838 QDFKKDMMHTYEMSDLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTP 897
Query: 116 F--NAKFTLDDGEEK 78
N K DG +K
Sbjct: 898 LLPNEKQKARDGADK 912
Score = 29.3 bits (64), Expect(2) = 6e-13
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 385 LYVKNHKNEFLIRC*YVDDMIYTSSS 308
LYVK + LI YVDD+IYT +S
Sbjct: 808 LYVKKTGTDILIVSLYVDDLIYTGNS 833
>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
Length = 1472
Score = 64.3 bits (155), Expect(3) = 9e-13
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Frame = -1
Query: 293 DFKESVMKTFEMTDLSLRHYFLGVEVIQDSYGIFIC*KKYVDD*LKKFSKLNCKPAKTQF 114
+FK + K FEM++L L H+FL +EV Q G+F+ +KY D LKKF+ LNCK T
Sbjct: 958 EFKACMKKKFEMSBLGLLHFFLXLEVKQVEDGVFVSQRKYXVDLLKKFNMLNCKVVATXM 1017
Query: 113 NA--KFTLDDGEEK 78
N+ K +DG E+
Sbjct: 1018 NSNEKLQAEDGTER 1031
Score = 33.1 bits (74), Expect(3) = 9e-13
Identities = 17/27 (62%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -2
Query: 385 LYVKNH-KNEFLIRC*YVDDMIYTSSS 308
LY+K KN+ LI C YVDDMIY SS
Sbjct: 926 LYLKRQGKNDLLIICLYVDDMIYMGSS 952
Score = 20.8 bits (42), Expect(3) = 9e-13
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -2
Query: 43 SHVRPDLTFVVSLI 2
+H RPD+ F V +I
Sbjct: 1048 THTRPDIAFPVEVI 1061
>emb|CAN66512.1| hypothetical protein VITISV_026972 [Vitis vinifera]
Length = 791
Score = 74.7 bits (182), Expect(2) = 1e-12
Identities = 39/78 (50%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Frame = -1
Query: 296 EDFKESVMKTFEMTDLSLRHYFLGVEVIQDSYGIFIC*KKYVDD*LKKFSKLNCKPAKTQ 117
++FK ++K FEMTDL L YFLG+EV QD G+FI KKY + L KF +CK T
Sbjct: 507 KEFKAEMLKVFEMTDLGLMSYFLGMEVKQDHDGVFISQKKYAKEILNKFHMEDCKRTNTP 566
Query: 116 FN--AKFTLDDGEEKIGE 69
N KF+ DDG EK+ E
Sbjct: 567 MNQKEKFSKDDGAEKVDE 584
Score = 23.9 bits (50), Expect(2) = 1e-12
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 388 TLYVKNHKNEFLIRC*YVDDMIYTSSS 308
TLY+K ++ YVDD+ T S+
Sbjct: 476 TLYIKGTDANLIVVSVYVDDLFVTGSN 502
>gb|ABA95820.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1142
Score = 68.9 bits (167), Expect(2) = 1e-12
Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = -1
Query: 296 EDFKESVMKTFEMTDLSLRHYFLGVEVIQDSYGIFIC*KKYVDD*LKKFSKLNCKPAKTQ 117
+DFK+ +M T+EM+DL L +YFLG+EV Q GIFI +KY ++ LKKF NCK T
Sbjct: 844 QDFKKDMMHTYEMSDLGLLYYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTP 903
Query: 116 F--NAKFTLDDGEEKI 75
N K DG +K+
Sbjct: 904 LLPNEKQKARDGADKV 919
Score = 29.3 bits (64), Expect(2) = 1e-12
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 388 TLYVKNHKNEFLIRC*YVDDMIYTSSS 308
TLYV + LI YVDD+IYT +S
Sbjct: 813 TLYVNKTGTDILIVSLYVDDLIYTGNS 839
>ref|XP_006582625.1| PREDICTED: uncharacterized mitochondrial protein AtMg00810-like
[Glycine max]
Length = 244
Score = 68.9 bits (167), Expect(2) = 2e-12
Identities = 39/71 (54%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Frame = -1
Query: 293 DFKESVMKTFEMTDLSLRHYFLGVEVIQDSYGIFIC*KKYVDD*LKKFSKLNCKPAKTQF 114
+FKE MKTFEMTDL L YFLG+EV Q + GIFI KKY + LKKF CKP T
Sbjct: 45 EFKED-MKTFEMTDLGLMSYFLGIEVSQRNEGIFISQKKYTEGLLKKFKMYGCKPVATPL 103
Query: 113 --NAKFTLDDG 87
N K +DG
Sbjct: 104 ITNEKLQKNDG 114
Score = 28.9 bits (63), Expect(2) = 2e-12
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 388 TLYVKNHKNEFLIRC*YVDDMIYTSSS 308
TLY+K+ L+ YVDD+IYT ++
Sbjct: 13 TLYIKSQGQNTLLLSLYVDDLIYTGNN 39
>ref|XP_006595263.1| PREDICTED: uncharacterized mitochondrial protein AtMg00810-like
[Glycine max]
Length = 222
Score = 69.7 bits (169), Expect(2) = 2e-12
Identities = 37/71 (52%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Frame = -1
Query: 293 DFKESVMKTFEMTDLSLRHYFLGVEVIQDSYGIFIC*KKYVDD*LKKFSKLNCKPAKTQF 114
+FKE +M TFEM DL L YFLG+EV Q + GIFI KKY + LKKF CKP T
Sbjct: 45 EFKEDMMNTFEMIDLGLMSYFLGIEVSQRNKGIFISQKKYTEGLLKKFKMYGCKPVATPL 104
Query: 113 --NAKFTLDDG 87
N K +DG
Sbjct: 105 ITNEKLQKNDG 115
Score = 28.1 bits (61), Expect(2) = 2e-12
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 388 TLYVKNHKNEFLIRC*YVDDMIYTSSS 308
TLY+K+ L+ YVDD+IYT ++
Sbjct: 13 TLYIKSQGQYTLLLSLYVDDLIYTENN 39
>emb|CAN63536.1| hypothetical protein VITISV_002860 [Vitis vinifera]
Length = 1041
Score = 72.4 bits (176), Expect(2) = 3e-12
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Frame = -1
Query: 299 YEDFKESVMKTFEMTDLSLRHYFLGVEVIQDSYGIFIC*KKYVDD*LKKFSKLNCKPAKT 120
+E FK+S+M FEM+DL + HYFLG+E++Q S GI I KKYV + L +F +C P T
Sbjct: 810 FESFKKSMMAEFEMSDLGMMHYFLGIEMMQYSTGILISQKKYVGEILDRFQMKDCNPVNT 869
Query: 119 --QFNAKFTLDDGEEKIGE 69
+F K D+G +K+ +
Sbjct: 870 PSEFGMKLNKDNGGKKVDD 888
Score = 24.6 bits (52), Expect(2) = 3e-12
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 388 TLYVK-NHKNEFLIRC*YVDDMIYTSSS 308
TL++K + I C YVDD+IYT ++
Sbjct: 779 TLFIKIEDGGKMHIVCLYVDDLIYTGNN 806
>dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana]
gi|13872710|emb|CAC37622.1| polyprotein [Arabidopsis
thaliana]
Length = 1334
Score = 59.3 bits (142), Expect(2) = 4e-12
Identities = 30/58 (51%), Positives = 36/58 (62%)
Frame = -1
Query: 296 EDFKESVMKTFEMTDLSLRHYFLGVEVIQDSYGIFIC*KKYVDD*LKKFSKLNCKPAK 123
E FK S+M+ F MTDL YFLGVEVIQD GIFI +KY + +KK+ C K
Sbjct: 1034 EGFKNSMMEEFAMTDLGKMKYFLGVEVIQDERGIFINQRKYAAEIIKKYGMEGCNSVK 1091
Score = 37.4 bits (85), Expect(2) = 4e-12
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = -2
Query: 388 TLYVKNHKNEFLIRC*YVDDMIYTSSSFE 302
TL+VK +++FL+ YVDD+IYT SS E
Sbjct: 1003 TLFVKKERSDFLVVSVYVDDLIYTGSSME 1031
>gb|AAG51247.1|AC055769_6 copia-type polyprotein, putative; 28768-32772 [Arabidopsis thaliana]
Length = 1334
Score = 59.3 bits (142), Expect(2) = 4e-12
Identities = 30/58 (51%), Positives = 36/58 (62%)
Frame = -1
Query: 296 EDFKESVMKTFEMTDLSLRHYFLGVEVIQDSYGIFIC*KKYVDD*LKKFSKLNCKPAK 123
E FK S+M+ F MTDL YFLGVEVIQD GIFI +KY + +KK+ C K
Sbjct: 1034 EGFKNSMMEEFAMTDLGKMKYFLGVEVIQDERGIFINQRKYAAEIIKKYGMEGCNSVK 1091
Score = 37.4 bits (85), Expect(2) = 4e-12
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = -2
Query: 388 TLYVKNHKNEFLIRC*YVDDMIYTSSSFE 302
TL+VK +++FL+ YVDD+IYT SS E
Sbjct: 1003 TLFVKKERSDFLVVSVYVDDLIYTGSSME 1031
>gb|AAF25964.2|AC017118_1 F6N18.1 [Arabidopsis thaliana]
Length = 1207
Score = 59.3 bits (142), Expect(2) = 4e-12
Identities = 30/58 (51%), Positives = 36/58 (62%)
Frame = -1
Query: 296 EDFKESVMKTFEMTDLSLRHYFLGVEVIQDSYGIFIC*KKYVDD*LKKFSKLNCKPAK 123
E FK S+M+ F MTDL YFLGVEVIQD GIFI +KY + +KK+ C K
Sbjct: 939 EGFKNSMMEEFAMTDLGKMKYFLGVEVIQDERGIFINQRKYAAEIIKKYGMEGCNSVK 996
Score = 37.4 bits (85), Expect(2) = 4e-12
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = -2
Query: 388 TLYVKNHKNEFLIRC*YVDDMIYTSSSFE 302
TL+VK +++FL+ YVDD+IYT SS E
Sbjct: 908 TLFVKKERSDFLVVSVYVDDLIYTGSSME 936