BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00046505
         (275 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containi...   122   5e-26
emb|CBI41082.3| unnamed protein product [Vitis vinifera]              119   4e-25
ref|XP_003604365.1| Pentatricopeptide repeat-containing protein ...    69   7e-10
ref|XP_003598017.1| Pentatricopeptide repeat-containing protein ...    69   9e-10
ref|XP_004295750.1| PREDICTED: pentatricopeptide repeat-containi...    67   3e-09
emb|CBI27471.3| unnamed protein product [Vitis vinifera]               67   3e-09
ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containi...    67   3e-09
ref|XP_002522705.1| pentatricopeptide repeat-containing protein,...    67   3e-09
emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]    67   3e-09
ref|XP_006425654.1| hypothetical protein CICLE_v10025166mg [Citr...    65   7e-09
ref|XP_006492694.1| PREDICTED: pentatricopeptide repeat-containi...    64   2e-08
ref|XP_007214988.1| hypothetical protein PRUPE_ppa002028mg [Prun...    64   2e-08
ref|XP_003612041.1| Pentatricopeptide repeat-containing protein ...    64   2e-08
emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]    64   2e-08
ref|XP_007046897.1| Tetratricopeptide repeat (TPR)-like superfam...    63   4e-08
ref|XP_006841470.1| hypothetical protein AMTR_s00003p00103190 [A...    63   5e-08
ref|XP_007016122.1| Tetratricopeptide repeat (TPR)-like superfam...    62   6e-08
ref|XP_004514991.1| PREDICTED: pentatricopeptide repeat-containi...    62   8e-08
ref|XP_006445864.1| hypothetical protein CICLE_v10018300mg [Citr...    62   1e-07
ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containi...    62   1e-07

>ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  122 bits (306), Expect = 5e-26
 Identities = 61/88 (69%), Positives = 72/88 (81%)
 Frame = +1

Query: 10  IEQKTMSLLNDSIKLDHLHQIHAFLYKTSLDSNNFILAKFLRRIFSCSSPNSNLHYARSV 189
           I +K MSLL ++ KL+ + QIHA + KTSLD NNF+LAK LRR+F+CSS N +L YARSV
Sbjct: 2   IGKKVMSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSAN-DLLYARSV 60

Query: 190 FDRIPSPDAFIWNTMIRAYLNAQNSQES 273
           FD IPSPD FIWNTMIRAYLN+QN QES
Sbjct: 61  FDEIPSPDTFIWNTMIRAYLNSQNPQES 88


>emb|CBI41082.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score =  119 bits (298), Expect = 4e-25
 Identities = 59/83 (71%), Positives = 69/83 (83%)
 Frame = +1

Query: 25  MSLLNDSIKLDHLHQIHAFLYKTSLDSNNFILAKFLRRIFSCSSPNSNLHYARSVFDRIP 204
           MSLL ++ KL+ + QIHA + KTSLD NNF+LAK LRR+F+CSS N +L YARSVFD IP
Sbjct: 1   MSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSAN-DLLYARSVFDEIP 59

Query: 205 SPDAFIWNTMIRAYLNAQNSQES 273
           SPD FIWNTMIRAYLN+QN QES
Sbjct: 60  SPDTFIWNTMIRAYLNSQNPQES 82


>ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355505420|gb|AES86562.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 874

 Score = 68.9 bits (167), Expect = 7e-10
 Identities = 33/74 (44%), Positives = 46/74 (62%)
 Frame = +1

Query: 25  MSLLNDSIKLDHLHQIHAFLYKTSLDSNNFILAKFLRRIFSCSSPNSNLHYARSVFDRIP 204
           +SLL     +  ++QIH+   KT L SN+  L K +  IF C+  + +++YAR VFD IP
Sbjct: 39  ISLLETCNTMYEINQIHSQTIKTGLSSNHLFLTKVI--IFCCTKESGDVYYARKVFDEIP 96

Query: 205 SPDAFIWNTMIRAY 246
            P  FIWNTMI+ Y
Sbjct: 97  QPSVFIWNTMIKGY 110


>ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355487065|gb|AES68268.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 479

 Score = 68.6 bits (166), Expect = 9e-10
 Identities = 36/81 (44%), Positives = 50/81 (61%)
 Frame = +1

Query: 13  EQKTMSLLNDSIKLDHLHQIHAFLYKTSLDSNNFILAKFLRRIFSCSSPNSNLHYARSVF 192
           EQ  M+L N    L+HL QIHA ++ T  + N  +  K +  +F   S N N  YA +VF
Sbjct: 12  EQTLMNLFNHCSTLNHLKQIHARIFLTGFNHNLILSGKII--MFCAVSQNMN--YALNVF 67

Query: 193 DRIPSPDAFIWNTMIRAYLNA 255
           D+IP PD+F+WNTMIR + N+
Sbjct: 68  DKIPKPDSFLWNTMIRGFGNS 88


>ref|XP_004295750.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Fragaria vesca subsp. vesca]
          Length = 1049

 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 35/86 (40%), Positives = 52/86 (60%)
 Frame = +1

Query: 16  QKTMSLLNDSIKLDHLHQIHAFLYKTSLDSNNFILAKFLRRIFSCSSPNSNLHYARSVFD 195
           Q  + L++    L+HL Q+HA + KTSL  + +  +K +    +  SP S+L YAR VFD
Sbjct: 87  QLLLPLIDQCTTLNHLKQVHAQMLKTSLFFDPYSASKLITA--AALSPFSSLDYARQVFD 144

Query: 196 RIPSPDAFIWNTMIRAYLNAQNSQES 273
            IP P+ F WN +IRAY ++ +  ES
Sbjct: 145 EIPEPNLFTWNALIRAYASSPDPVES 170


>emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
 Frame = +1

Query: 19  KTMSLLNDSIKLDHLHQIHAFLYKTSLDSNNFILAKFLRRIFSCSSPNS-NLHYARSVFD 195
           +T+ LL     ++ L QIH  + KT L  +    +K L     C+SPNS +L YAR+VFD
Sbjct: 20  QTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLA---FCASPNSGSLAYARTVFD 76

Query: 196 RIPSPDAFIWNTMIRAYLNAQNSQES 273
           RI  P+ F+WNTMIR Y N++  +E+
Sbjct: 77  RIFRPNTFMWNTMIRGYSNSKEPEEA 102


>ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
 Frame = +1

Query: 19  KTMSLLNDSIKLDHLHQIHAFLYKTSLDSNNFILAKFLRRIFSCSSPNS-NLHYARSVFD 195
           +T+ LL     ++ L QIH  + KT L  +    +K L     C+SPNS +L YAR+VFD
Sbjct: 20  QTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLA---FCASPNSGSLAYARTVFD 76

Query: 196 RIPSPDAFIWNTMIRAYLNAQNSQES 273
           RI  P+ F+WNTMIR Y N++  +E+
Sbjct: 77  RIFRPNTFMWNTMIRGYSNSKEPEEA 102


>ref|XP_002522705.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538055|gb|EEF39667.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 501

 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 30/73 (41%), Positives = 46/73 (63%)
 Frame = +1

Query: 28  SLLNDSIKLDHLHQIHAFLYKTSLDSNNFILAKFLRRIFSCSSPNSNLHYARSVFDRIPS 207
           SL+++S+   HL+QIHA L+ + L  N F++ K +    +C +    + YAR+VFD  P 
Sbjct: 51  SLIDNSVNRSHLNQIHAQLFVSRLQYNGFLITKLV----NCCATLGEIRYARNVFDYYPD 106

Query: 208 PDAFIWNTMIRAY 246
           PD F+WN +IR Y
Sbjct: 107 PDVFLWNAIIRCY 119


>emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
 Frame = +1

Query: 19  KTMSLLNDSIKLDHLHQIHAFLYKTSLDSNNFILAKFLRRIFSCSSPNS-NLHYARSVFD 195
           +T+ LL     ++ L QIH  + KT L  +    +K L     C+SPNS +L YAR+VFD
Sbjct: 20  QTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLA---FCASPNSGSLAYARTVFD 76

Query: 196 RIPSPDAFIWNTMIRAYLNAQNSQES 273
           RI  P+ F+WNTMIR Y N++  +E+
Sbjct: 77  RIFRPNTFMWNTMIRGYSNSKEPEEA 102


>ref|XP_006425654.1| hypothetical protein CICLE_v10025166mg [Citrus clementina]
           gi|568824869|ref|XP_006466814.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g66520-like [Citrus sinensis]
           gi|557527644|gb|ESR38894.1| hypothetical protein
           CICLE_v10025166mg [Citrus clementina]
          Length = 622

 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 32/84 (38%), Positives = 52/84 (61%)
 Frame = +1

Query: 22  TMSLLNDSIKLDHLHQIHAFLYKTSLDSNNFILAKFLRRIFSCSSPNSNLHYARSVFDRI 201
           T+SLLN    ++ L QIHA ++K  L  N  ++++ L   F   S + +L YA+ VFDRI
Sbjct: 21  TLSLLNRCSYMEELKQIHAQMFKKGLTVNTILVSRLLA--FCTFSNSGSLAYAQMVFDRI 78

Query: 202 PSPDAFIWNTMIRAYLNAQNSQES 273
             P+ F+WNTM+R Y ++   +++
Sbjct: 79  IKPNTFMWNTMVRGYADSSEPEQA 102


>ref|XP_006492694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Citrus sinensis]
          Length = 462

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
 Frame = +1

Query: 10  IEQKTMSLLNDSIKLDHLHQIHAFLYKTSLDSNNFILAKFLRRIFSCSSPNSNLHYARSV 189
           I +   +L+  S  + HLHQ+H    KTSLD N +I+++F+    S S     LH+ RS+
Sbjct: 2   ISRHIETLIQLSKTVHHLHQLHTLFLKTSLDHNTYIISRFILTSLSIS-----LHFTRSL 56

Query: 190 FDRIP-SPDAFIWNTMIRAYLNAQNSQES 273
           F+ +P +P  F +NT+IRAY     S ES
Sbjct: 57  FNNLPVTPPLFAYNTLIRAYAKTSCSIES 85


>ref|XP_007214988.1| hypothetical protein PRUPE_ppa002028mg [Prunus persica]
           gi|462411138|gb|EMJ16187.1| hypothetical protein
           PRUPE_ppa002028mg [Prunus persica]
          Length = 726

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 29/82 (35%), Positives = 48/82 (58%)
 Frame = +1

Query: 1   VKTIEQKTMSLLNDSIKLDHLHQIHAFLYKTSLDSNNFILAKFLRRIFSCSSPNSNLHYA 180
           +++ E   ++L  +   +D L QIHA   KT L ++  +L + +  +F C+    ++ YA
Sbjct: 47  LQSFENPPVTLFENCKSMDQLKQIHAQTMKTGLTAHPMVLNRII--VFCCTDEFGDMKYA 104

Query: 181 RSVFDRIPSPDAFIWNTMIRAY 246
           R VFD IP P  F+WNTM++ Y
Sbjct: 105 RRVFDTIPEPSVFLWNTMMKGY 126


>ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513376|gb|AES94999.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 518

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 36/86 (41%), Positives = 49/86 (56%)
 Frame = +1

Query: 16  QKTMSLLNDSIKLDHLHQIHAFLYKTSLDSNNFILAKFLRRIFSCSSPNSNLHYARSVFD 195
           ++TMSLL     +  L QIH  L K     +   +++ L    S     SNL YAR VFD
Sbjct: 12  EQTMSLLERCSNIGELKQIHGQLLKKGTIRHKLTVSRLLTTYASMEF--SNLTYARMVFD 69

Query: 196 RIPSPDAFIWNTMIRAYLNAQNSQES 273
           RI SP+  +WNTMIRAY N+ + +E+
Sbjct: 70  RISSPNTVMWNTMIRAYSNSNDPEEA 95


>emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
          Length = 516

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 29/76 (38%), Positives = 46/76 (60%)
 Frame = +1

Query: 13  EQKTMSLLNDSIKLDHLHQIHAFLYKTSLDSNNFILAKFLRRIFSCSSPNSNLHYARSVF 192
           E++ MS+      + HL Q+HA + +T L+ N F++ K +  +F   S   ++ YA  VF
Sbjct: 51  EERVMSVFKQCESMKHLEQLHAHVIQTGLEQNLFVMGKII--VFCAVSECGSMDYALRVF 108

Query: 193 DRIPSPDAFIWNTMIR 240
            +I +PD F+WNTMIR
Sbjct: 109 GKIENPDGFLWNTMIR 124


>ref|XP_007046897.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma
           cacao] gi|508699158|gb|EOX91054.1| Tetratricopeptide
           repeat (TPR)-like superfamily protein [Theobroma cacao]
          Length = 529

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 31/85 (36%), Positives = 53/85 (62%)
 Frame = +1

Query: 19  KTMSLLNDSIKLDHLHQIHAFLYKTSLDSNNFILAKFLRRIFSCSSPNSNLHYARSVFDR 198
           +T+S+L    +++ L QIHA ++KT L ++   +++ L   F  S    NL YA+ VFDR
Sbjct: 20  QTLSVLERCSRMEELKQIHAQMFKTGLVADTITVSRILT--FCVSPKYGNLEYAQMVFDR 77

Query: 199 IPSPDAFIWNTMIRAYLNAQNSQES 273
           +  P+ F++NTMIR Y N +  +++
Sbjct: 78  VSRPNTFMYNTMIRGYSNNKEPEKA 102


>ref|XP_006841470.1| hypothetical protein AMTR_s00003p00103190 [Amborella trichopoda]
           gi|548843491|gb|ERN03145.1| hypothetical protein
           AMTR_s00003p00103190 [Amborella trichopoda]
          Length = 297

 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
 Frame = +1

Query: 7   TIEQKTMSLLNDSIKLDHLHQIHAFLYKTSLDSNNFILAKFLRRIFSCSSPNS-NLHYAR 183
           T  Q    L +    ++HL QIHA + +  L  NNF++A  ++    C+ P S NL+YAR
Sbjct: 90  TAHQFITLLESKCTSMNHLKQIHAQITRHGLSQNNFLMASLVK---FCAEPTSGNLNYAR 146

Query: 184 SVFDRIPSPDAFIWNTMIR 240
           +VF+++  P  FIWNTMIR
Sbjct: 147 AVFNQLKDPHPFIWNTMIR 165


>ref|XP_007016122.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma
           cacao] gi|508786485|gb|EOY33741.1| Tetratricopeptide
           repeat (TPR)-like superfamily protein [Theobroma cacao]
          Length = 733

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 32/78 (41%), Positives = 45/78 (57%)
 Frame = +1

Query: 13  EQKTMSLLNDSIKLDHLHQIHAFLYKTSLDSNNFILAKFLRRIFSCSSPNSNLHYARSVF 192
           +   +S +N    L+ L QIHA + +T L  N +  +K      S  SP S+L YAR VF
Sbjct: 25  DDPVLSRINQCTNLNQLKQIHAQMLRTGLFFNPYSASKLFAA--SALSPFSSLDYARKVF 82

Query: 193 DRIPSPDAFIWNTMIRAY 246
           D+IP P+ + WNT+IR Y
Sbjct: 83  DQIPKPNLYTWNTLIRVY 100


>ref|XP_004514991.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cicer arietinum]
          Length = 690

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
 Frame = +1

Query: 1   VKTIEQKTMSLLNDSIK-LDHLHQIHAFLYKTSLDSNNFILAKFLRRIFSCSSPNSNLHY 177
           +  +    +S L DS K +  + Q HA L  TS+ S+N +  KFL+ +   S     L Y
Sbjct: 79  IHVVNYVRLSFLIDSFKSMQQIKQTHAHLITTSIISHNVLANKFLKHVALYS-----LSY 133

Query: 178 ARSVFDRIPSPDAFIWNTMIRAYLNAQNS 264
           A  +FD IP PD FI+NTMI+AY  + NS
Sbjct: 134 AHKLFDTIPQPDLFIYNTMIKAYSLSPNS 162


>ref|XP_006445864.1| hypothetical protein CICLE_v10018300mg [Citrus clementina]
           gi|557548475|gb|ESR59104.1| hypothetical protein
           CICLE_v10018300mg [Citrus clementina]
          Length = 462

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
 Frame = +1

Query: 10  IEQKTMSLLNDSIKLDHLHQIHAFLYKTSLDSNNFILAKFLRRIFSCSSPNSNLHYARSV 189
           I +   +L+  S  + HLHQ+H    K SLD N +I+++F+    S S     LH+ RS+
Sbjct: 2   ISRHIETLIQLSKTVHHLHQLHTLFLKKSLDHNTYIISRFILTSLSIS-----LHFTRSL 56

Query: 190 FDRIP-SPDAFIWNTMIRAYLNAQNSQES 273
           F+ +P +P  F +NT+IRAY     S ES
Sbjct: 57  FNNLPVTPPLFAYNTLIRAYAKTSCSIES 85


>ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
           gi|449477575|ref|XP_004155061.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 506

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 31/78 (39%), Positives = 45/78 (57%)
 Frame = +1

Query: 13  EQKTMSLLNDSIKLDHLHQIHAFLYKTSLDSNNFILAKFLRRIFSCSSPNSNLHYARSVF 192
           EQK M L      L  L+Q+HA + +   D N F++ K +   F   S + +++YA  VF
Sbjct: 55  EQKFMFLFKQCSTLKDLNQLHASIIRLGFDQNLFVIGKLID--FCAVSDHGDMNYAVVVF 112

Query: 193 DRIPSPDAFIWNTMIRAY 246
           DRI + D F+WNTMIR +
Sbjct: 113 DRIENADGFLWNTMIRGF 130