BLASTX nr result
ID: Cocculus23_contig00044549
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00044549
(351 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_008802509.1| ribosomal protein S4 (mitochondrion) [Asclep... 79 5e-13
ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus ... 79 5e-13
ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millet... 79 5e-13
ref|YP_002000578.1| ribosomal protein S4 [Oryza sativa Japonica ... 79 5e-13
dbj|BAD83538.2| ribosomal protein S4, partial (mitochondrion) [N... 77 3e-12
ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|375911... 75 1e-11
sp|Q31708.2|RT04_ARATH RecName: Full=Ribosomal protein S4, mitoc... 75 1e-11
gb|ACH78250.1| ribosomal protein S4 [Arabidopsis thaliana] 75 1e-11
ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus] gi|... 74 2e-11
ref|YP_004222288.1| ribosomal protein S4 [Beta vulgaris subsp. m... 73 5e-11
ref|NP_064046.2| rps4 gene product (mitochondrion) [Beta vulgari... 73 5e-11
emb|CBX33388.1| ribosomal protein S4 (mitochondrion) [Malus dome... 72 1e-10
ref|XP_004500180.1| PREDICTED: ribosomal protein S4, mitochondri... 70 3e-10
gb|AGC78977.1| ribosomal protein S4 (mitochondrion) [Vicia faba] 70 3e-10
ref|YP_007889804.1| ribosomal protein S4 (mitochondrion) [Vigna ... 70 3e-10
ref|YP_007516900.1| ribosomal protein S4 (mitochondrion) [Glycin... 70 3e-10
ref|XP_003588262.1| Ribosomal protein S4 [Medicago truncatula] g... 70 3e-10
ref|YP_004222821.1| ribosomal protein S4 [Vigna radiata] gi|3082... 70 3e-10
gb|EXB66620.1| Ribosomal protein S4 [Morus notabilis] 69 5e-10
ref|YP_004237282.1| ribosomal protein S4 (mitochondrion) [Ricinu... 69 7e-10
>ref|YP_008802509.1| ribosomal protein S4 (mitochondrion) [Asclepias syriaca]
gi|556562347|gb|AGZ63043.1| ribosomal protein S4
(mitochondrion) [Asclepias syriaca]
Length = 274
Score = 79.3 bits (194), Expect = 5e-13
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +1
Query: 1 LKAVVFYGPNIGHIPHDIRLKDLNLHLWSGNGRGQNI 111
LKAVVFYGPNIGHIPHDIRLKDLNL LWSGNGRGQNI
Sbjct: 238 LKAVVFYGPNIGHIPHDIRLKDLNLLLWSGNGRGQNI 274
>ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus japonicus]
gi|357197350|gb|AET62946.1| ribosomal protein S4
(mitochondrion) [Lotus japonicus]
Length = 358
Score = 79.3 bits (194), Expect = 5e-13
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +1
Query: 1 LKAVVFYGPNIGHIPHDIRLKDLNLHLWSGNGRGQNI 111
LKAVVFYGPNIGHIPHDIRLKDLNL LWSGNGRGQNI
Sbjct: 322 LKAVVFYGPNIGHIPHDIRLKDLNLLLWSGNGRGQNI 358
>ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millettia pinnata]
gi|372450274|ref|YP_005090457.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
gi|357197313|gb|AET62910.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
gi|357197320|gb|AET62917.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
Length = 358
Score = 79.3 bits (194), Expect = 5e-13
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +1
Query: 1 LKAVVFYGPNIGHIPHDIRLKDLNLHLWSGNGRGQNI 111
LKAVVFYGPNIGHIPHDIRLKDLNL LWSGNGRGQNI
Sbjct: 322 LKAVVFYGPNIGHIPHDIRLKDLNLLLWSGNGRGQNI 358
>ref|YP_002000578.1| ribosomal protein S4 [Oryza sativa Japonica Group]
gi|92700092|dbj|BAC19883.2| Ribosomal protein S4 [Oryza
sativa Japonica Group]
Length = 352
Score = 79.3 bits (194), Expect = 5e-13
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +1
Query: 1 LKAVVFYGPNIGHIPHDIRLKDLNLHLWSGNGRGQNI 111
LKAVVFYGPNIGHIPHDIRLKDLNL LWSGNGRGQNI
Sbjct: 316 LKAVVFYGPNIGHIPHDIRLKDLNLLLWSGNGRGQNI 352
>dbj|BAD83538.2| ribosomal protein S4, partial (mitochondrion) [Nicotiana tabacum]
Length = 349
Score = 77.0 bits (188), Expect = 3e-12
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = +1
Query: 1 LKAVVFYGPNIGHIPHDIRLKDLNLHLWSGNGRGQNI 111
LKAVVFYGPNIGHIPHDIRLKDLNL LWSG GRGQNI
Sbjct: 313 LKAVVFYGPNIGHIPHDIRLKDLNLLLWSGKGRGQNI 349
>ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|37591124|dbj|BAC98926.1|
ribosomal protein S4 [Brassica napus]
Length = 362
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +1
Query: 4 KAVVFYGPNIGHIPHDIRLKDLNLHLWSGNGRGQNI 111
KAVVFYGPNIGHIPHDIRLKDLNL LWS NGRGQNI
Sbjct: 327 KAVVFYGPNIGHIPHDIRLKDLNLLLWSRNGRGQNI 362
>sp|Q31708.2|RT04_ARATH RecName: Full=Ribosomal protein S4, mitochondrial
Length = 362
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +1
Query: 4 KAVVFYGPNIGHIPHDIRLKDLNLHLWSGNGRGQNI 111
KAVVFYGPNIGHIPHDIRLKDLNL LWS NGRGQNI
Sbjct: 327 KAVVFYGPNIGHIPHDIRLKDLNLLLWSRNGRGQNI 362
>gb|ACH78250.1| ribosomal protein S4 [Arabidopsis thaliana]
Length = 362
Score = 74.7 bits (182), Expect = 1e-11
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +1
Query: 4 KAVVFYGPNIGHIPHDIRLKDLNLHLWSGNGRGQNI 111
KAVVFYGPNIGHIPHDIRLKDLNL LWS NGRGQNI
Sbjct: 327 KAVVFYGPNIGHIPHDIRLKDLNLLLWSRNGRGQNI 362
>ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus]
gi|259156791|gb|ACV96653.1| ribosomal protein S4
[Citrullus lanatus]
Length = 355
Score = 74.3 bits (181), Expect = 2e-11
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = +1
Query: 1 LKAVVFYGPNIGHIPHDIRLKDLNLHLWSGNGRGQNI 111
LKAVVFYGPNIGHIPHDIRLKDLNL L SGNGRGQNI
Sbjct: 319 LKAVVFYGPNIGHIPHDIRLKDLNLPLRSGNGRGQNI 355
>ref|YP_004222288.1| ribosomal protein S4 [Beta vulgaris subsp. maritima]
gi|317905723|emb|CBJ14108.1| ribosomal protein S4 [Beta
vulgaris subsp. maritima] gi|319439803|emb|CBJ17515.1|
ribosomal protein S4 [Beta vulgaris subsp. maritima]
Length = 315
Score = 72.8 bits (177), Expect = 5e-11
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +1
Query: 1 LKAVVFYGPNIGHIPHDIRLKDLNLHLWSGNGRGQN 108
LKAVVFYGPNI HIPHDIRLKDLNL LWSG GRGQN
Sbjct: 279 LKAVVFYGPNIDHIPHDIRLKDLNLLLWSGKGRGQN 314
>ref|NP_064046.2| rps4 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|346683270|ref|YP_004842202.1| ribosomal protein S4
[Beta macrocarpa] gi|87248052|gb|ABD36080.1| ribosomal
protein S4 [Beta vulgaris subsp. vulgaris]
gi|148491424|dbj|BAA99356.2| ribosomal protein S4 [Beta
vulgaris subsp. vulgaris] gi|320148708|emb|CBJ23346.1|
ribosomal protein S4 [Beta vulgaris subsp. maritima]
gi|345500188|emb|CBX25007.1| ribosomal protein S4 [Beta
macrocarpa] gi|384939188|emb|CBL52035.1| ribosoma
lprotein S4 (mitochondrion) [Beta vulgaris subsp.
maritima]
Length = 315
Score = 72.8 bits (177), Expect = 5e-11
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +1
Query: 1 LKAVVFYGPNIGHIPHDIRLKDLNLHLWSGNGRGQN 108
LKAVVFYGPNI HIPHDIRLKDLNL LWSG GRGQN
Sbjct: 279 LKAVVFYGPNIDHIPHDIRLKDLNLLLWSGKGRGQN 314
>emb|CBX33388.1| ribosomal protein S4 (mitochondrion) [Malus domestica]
Length = 359
Score = 71.6 bits (174), Expect = 1e-10
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = +1
Query: 1 LKAVVFYGPNIGHIPHDIRLKDLNLHLWSGNGRGQNI 111
LKAVV YGPNIGHIPHDIRLKDLNL L SGNGRGQNI
Sbjct: 323 LKAVVSYGPNIGHIPHDIRLKDLNLXLRSGNGRGQNI 359
>ref|XP_004500180.1| PREDICTED: ribosomal protein S4, mitochondrial-like [Cicer
arietinum]
Length = 304
Score = 70.1 bits (170), Expect = 3e-10
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +1
Query: 4 KAVVFYGPNIGHIPHDIRLKDLNLHLWSGNGRGQNI 111
KAVVFYGPNIGHIPHDIRLKD NL L SGNGRGQNI
Sbjct: 269 KAVVFYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 304
>gb|AGC78977.1| ribosomal protein S4 (mitochondrion) [Vicia faba]
Length = 346
Score = 70.1 bits (170), Expect = 3e-10
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +1
Query: 4 KAVVFYGPNIGHIPHDIRLKDLNLHLWSGNGRGQNI 111
KAVVFYGPNIGHIPHDIRLKD NL L SGNGRGQNI
Sbjct: 311 KAVVFYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 346
>ref|YP_007889804.1| ribosomal protein S4 (mitochondrion) [Vigna angularis]
gi|478620963|dbj|BAN15009.1| ribosomal protein S4
(mitochondrion) [Vigna angularis]
Length = 346
Score = 70.1 bits (170), Expect = 3e-10
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +1
Query: 4 KAVVFYGPNIGHIPHDIRLKDLNLHLWSGNGRGQNI 111
KAVVFYGPNIGHIPHDIRLKD NL L SGNGRGQNI
Sbjct: 311 KAVVFYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 346
>ref|YP_007516900.1| ribosomal protein S4 (mitochondrion) [Glycine max]
gi|403311571|gb|AFR34319.1| ribosomal protein S4
(mitochondrion) [Glycine max]
Length = 346
Score = 70.1 bits (170), Expect = 3e-10
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +1
Query: 4 KAVVFYGPNIGHIPHDIRLKDLNLHLWSGNGRGQNI 111
KAVVFYGPNIGHIPHDIRLKD NL L SGNGRGQNI
Sbjct: 311 KAVVFYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 346
>ref|XP_003588262.1| Ribosomal protein S4 [Medicago truncatula]
gi|355477310|gb|AES58513.1| Ribosomal protein S4
[Medicago truncatula]
Length = 349
Score = 70.1 bits (170), Expect = 3e-10
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +1
Query: 4 KAVVFYGPNIGHIPHDIRLKDLNLHLWSGNGRGQNI 111
KAVVFYGPNIGHIPHDIRLKD NL L SGNGRGQNI
Sbjct: 314 KAVVFYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 349
>ref|YP_004222821.1| ribosomal protein S4 [Vigna radiata] gi|308206763|gb|ADO19900.1|
ribosomal protein S4 [Vigna radiata]
Length = 346
Score = 70.1 bits (170), Expect = 3e-10
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +1
Query: 4 KAVVFYGPNIGHIPHDIRLKDLNLHLWSGNGRGQNI 111
KAVVFYGPNIGHIPHDIRLKD NL L SGNGRGQNI
Sbjct: 311 KAVVFYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI 346
>gb|EXB66620.1| Ribosomal protein S4 [Morus notabilis]
Length = 307
Score = 69.3 bits (168), Expect = 5e-10
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +1
Query: 4 KAVVFYGPNIGHIPHDIRLKDLNLHLWSGNGRGQNI 111
KAVV YGPNIGHIPHDIRLKDLNL L SGNGRGQNI
Sbjct: 272 KAVVSYGPNIGHIPHDIRLKDLNLLLRSGNGRGQNI 307
>ref|YP_004237282.1| ribosomal protein S4 (mitochondrion) [Ricinus communis]
gi|322394289|gb|ADW96046.1| ribosomal protein S4
(mitochondrion) [Ricinus communis]
Length = 352
Score = 68.9 bits (167), Expect = 7e-10
Identities = 33/37 (89%), Positives = 33/37 (89%)
Frame = +1
Query: 1 LKAVVFYGPNIGHIPHDIRLKDLNLHLWSGNGRGQNI 111
LKAVV YGP IGHIPHDIRLKDLNL L SGNGRGQNI
Sbjct: 316 LKAVVSYGPKIGHIPHDIRLKDLNLPLRSGNGRGQNI 352