BLASTX nr result
ID: Cocculus23_contig00042300
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00042300
(227 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera] 47 2e-11
emb|CAN72498.1| hypothetical protein VITISV_010513 [Vitis vinifera] 50 4e-11
emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera] 50 5e-11
emb|CAN63683.1| hypothetical protein VITISV_030301 [Vitis vinifera] 50 5e-11
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 53 5e-11
emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera] 50 5e-11
emb|CAN68496.1| hypothetical protein VITISV_010947 [Vitis vinifera] 49 9e-11
emb|CAN64288.1| hypothetical protein VITISV_022326 [Vitis vinifera] 49 9e-11
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 52 1e-10
emb|CAN63482.1| hypothetical protein VITISV_011510 [Vitis vinifera] 48 1e-10
gb|ABF94964.1| retrotransposon protein, putative, Ty1-copia subc... 52 1e-10
ref|XP_004966848.1| PREDICTED: uncharacterized protein LOC101777... 54 1e-10
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 56 1e-10
gb|AAM18766.1|AC099325_22 putative copia-like retrotransposon Ho... 52 1e-10
gb|ABB47033.2| retrotransposon protein, putative, Ty1-copia subc... 52 1e-10
gb|AAL86510.1|AC099040_14 putative retrotransposon protein [Oryz... 52 1e-10
emb|CAE05450.3| OSJNBa0073E02.10 [Oryza sativa Japonica Group] 51 1e-10
emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group] 51 1e-10
ref|XP_003560110.1| PREDICTED: uncharacterized protein LOC100846... 55 2e-10
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group... 54 2e-10
>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
Length = 1262
Score = 47.4 bits (111), Expect(2) = 2e-11
Identities = 21/38 (55%), Positives = 30/38 (78%)
Frame = +2
Query: 2 SDPNDRHSTTGFAVFLGGNLISWPSRKQPTVSRSTSKS 115
SD +DR ST+G VFLG +L+SW S+KQ T SRS++++
Sbjct: 1112 SDVDDRRSTSGHCVFLGKSLVSWSSKKQHTTSRSSTEA 1149
Score = 46.6 bits (109), Expect(2) = 2e-11
Identities = 20/40 (50%), Positives = 32/40 (80%)
Frame = +3
Query: 108 QSQYRSLSNLTSKVIWIQSLLLELQCCPKCIRVLNCDNVS 227
+++YRSL++LTS+++W+QSLL ELQ + V+ CDN+S
Sbjct: 1148 EAEYRSLASLTSEMLWLQSLLSELQTKMTMVPVIWCDNIS 1187
>emb|CAN72498.1| hypothetical protein VITISV_010513 [Vitis vinifera]
Length = 1394
Score = 50.1 bits (118), Expect(2) = 4e-11
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = +2
Query: 2 SDPNDRHSTTGFAVFLGGNLISWPSRKQPTVSRSTSKS 115
S P+DR ST+G+ VFLG NLISW S KQ VS+S+++S
Sbjct: 1116 SCPDDRRSTSGYCVFLGSNLISWSSSKQRLVSKSSAES 1153
Score = 43.1 bits (100), Expect(2) = 4e-11
Identities = 22/40 (55%), Positives = 29/40 (72%)
Frame = +3
Query: 108 QSQYRSLSNLTSKVIWIQSLLLELQCCPKCIRVLNCDNVS 227
+S+YR L +LT++++WIQSLL EL C P VL CDN S
Sbjct: 1152 ESEYRGLVSLTAELVWIQSLLQEL-CLPTSPPVLWCDNQS 1190
>emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]
Length = 1434
Score = 50.1 bits (118), Expect(2) = 5e-11
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = +2
Query: 2 SDPNDRHSTTGFAVFLGGNLISWPSRKQPTVSRSTSKS 115
S P+DR ST+G+ VFLG NLISW S KQ VS+S+++S
Sbjct: 1221 SCPDDRRSTSGYCVFLGSNLISWSSSKQRLVSKSSAES 1258
Score = 42.7 bits (99), Expect(2) = 5e-11
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = +3
Query: 108 QSQYRSLSNLTSKVIWIQSLLLELQCCPKCIRVLNCDNVS 227
+S+YR L +LT++++WIQSLL EL C P +L CDN S
Sbjct: 1257 ESEYRGLVSLTAELVWIQSLLQEL-CLPTSPPILWCDNQS 1295
>emb|CAN63683.1| hypothetical protein VITISV_030301 [Vitis vinifera]
Length = 1272
Score = 50.1 bits (118), Expect(2) = 5e-11
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = +2
Query: 2 SDPNDRHSTTGFAVFLGGNLISWPSRKQPTVSRSTSKS 115
S P+DR ST+G+ VFLG NLISW S KQ VS+S+++S
Sbjct: 1090 SCPDDRRSTSGYCVFLGSNLISWSSSKQRLVSKSSAES 1127
Score = 42.7 bits (99), Expect(2) = 5e-11
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = +3
Query: 108 QSQYRSLSNLTSKVIWIQSLLLELQCCPKCIRVLNCDNVS 227
+S+YR L +LT++++WIQSLL EL C P +L CDN S
Sbjct: 1126 ESEYRGLVSLTAELVWIQSLLQEL-CLPTSPPILWCDNQS 1164
>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108706314|gb|ABF94109.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1247
Score = 52.8 bits (125), Expect(2) = 5e-11
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +2
Query: 11 NDRHSTTGFAVFLGGNLISWPSRKQPTVSRSTSKS 115
+DR ST GFAVFLG NL+SW +RKQ TVSRS+++S
Sbjct: 1106 DDRRSTGGFAVFLGDNLVSWSARKQATVSRSSTES 1140
Score = 40.0 bits (92), Expect(2) = 5e-11
Identities = 16/39 (41%), Positives = 29/39 (74%)
Frame = +3
Query: 108 QSQYRSLSNLTSKVIWIQSLLLELQCCPKCIRVLNCDNV 224
+S+Y++L+N T++++W+Q+LL ELQ + L CDN+
Sbjct: 1139 ESEYKALANATAEIMWVQTLLAELQVESPSMAKLWCDNL 1177
>emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]
Length = 773
Score = 50.1 bits (118), Expect(2) = 5e-11
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = +2
Query: 2 SDPNDRHSTTGFAVFLGGNLISWPSRKQPTVSRSTSKS 115
S P+DR ST+G+ VFLG NLISW S KQ VS+S+++S
Sbjct: 568 SCPDDRRSTSGYCVFLGSNLISWSSSKQRLVSKSSAES 605
Score = 42.7 bits (99), Expect(2) = 5e-11
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = +3
Query: 108 QSQYRSLSNLTSKVIWIQSLLLELQCCPKCIRVLNCDNVS 227
+S+YR L +LT++++WIQSLL EL C P +L CDN S
Sbjct: 604 ESEYRGLVSLTAELVWIQSLLQEL-CLPTSPPILWCDNQS 642
>emb|CAN68496.1| hypothetical protein VITISV_010947 [Vitis vinifera]
Length = 1539
Score = 48.9 bits (115), Expect(2) = 9e-11
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = +2
Query: 2 SDPNDRHSTTGFAVFLGGNLISWPSRKQPTVSRSTSKS 115
S P+DR ST+G+ VFLG NLISW S KQ VS+S ++S
Sbjct: 1396 SCPDDRRSTSGYYVFLGSNLISWSSSKQRLVSKSNAES 1433
Score = 43.1 bits (100), Expect(2) = 9e-11
Identities = 22/40 (55%), Positives = 29/40 (72%)
Frame = +3
Query: 108 QSQYRSLSNLTSKVIWIQSLLLELQCCPKCIRVLNCDNVS 227
+S+YR L +LT++++WIQSLL EL C P VL CDN S
Sbjct: 1432 ESEYRGLVSLTAELVWIQSLLQEL-CLPTSPPVLWCDNQS 1470
>emb|CAN64288.1| hypothetical protein VITISV_022326 [Vitis vinifera]
Length = 1508
Score = 48.9 bits (115), Expect(2) = 9e-11
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = +2
Query: 2 SDPNDRHSTTGFAVFLGGNLISWPSRKQPTVSRSTSKS 115
S P+DR ST+G+ VFLG NLISW S KQ VS+S ++S
Sbjct: 1372 SCPDDRRSTSGYXVFLGSNLISWSSSKQRLVSKSXAES 1409
Score = 43.1 bits (100), Expect(2) = 9e-11
Identities = 22/40 (55%), Positives = 29/40 (72%)
Frame = +3
Query: 108 QSQYRSLSNLTSKVIWIQSLLLELQCCPKCIRVLNCDNVS 227
+S+YR L +LT++++WIQSLL EL C P VL CDN S
Sbjct: 1408 ESEYRGLVSLTAELVWIQSLLQEL-CLPTSPPVLWCDNQS 1446
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 52.0 bits (123), Expect(2) = 1e-10
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +2
Query: 11 NDRHSTTGFAVFLGGNLISWPSRKQPTVSRSTSKS 115
+DR ST GFAVFLG NL+SW +RKQ TVSRS+++S
Sbjct: 1306 DDRRSTGGFAVFLGDNLVSWCARKQATVSRSSTES 1340
Score = 39.7 bits (91), Expect(2) = 1e-10
Identities = 16/39 (41%), Positives = 29/39 (74%)
Frame = +3
Query: 108 QSQYRSLSNLTSKVIWIQSLLLELQCCPKCIRVLNCDNV 224
+S+Y++L+N T++++W+Q+LL ELQ + L CDN+
Sbjct: 1339 ESEYKALANATAEIMWVQTLLTELQVQSPPMAKLWCDNL 1377
>emb|CAN63482.1| hypothetical protein VITISV_011510 [Vitis vinifera]
Length = 1124
Score = 48.1 bits (113), Expect(2) = 1e-10
Identities = 21/38 (55%), Positives = 30/38 (78%)
Frame = +2
Query: 2 SDPNDRHSTTGFAVFLGGNLISWPSRKQPTVSRSTSKS 115
SD +DR ST+G VFLG NL+SW S+K T+SRS++++
Sbjct: 850 SDVDDRRSTSGHCVFLGXNLVSWSSKKLHTISRSSTEA 887
Score = 43.5 bits (101), Expect(2) = 1e-10
Identities = 18/40 (45%), Positives = 30/40 (75%)
Frame = +3
Query: 108 QSQYRSLSNLTSKVIWIQSLLLELQCCPKCIRVLNCDNVS 227
+++YRSL++LTS+++W+QSLL E Q + + CDN+S
Sbjct: 886 EAEYRSLASLTSEMLWLQSLLSEFQTKMTMVSXIWCDNIS 925
>gb|ABF94964.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 846
Score = 52.0 bits (123), Expect(2) = 1e-10
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +2
Query: 11 NDRHSTTGFAVFLGGNLISWPSRKQPTVSRSTSKS 115
+DR ST GFAVFLG NL+SW +RKQ TVSRS+++S
Sbjct: 705 DDRRSTGGFAVFLGDNLVSWCARKQATVSRSSTES 739
Score = 39.7 bits (91), Expect(2) = 1e-10
Identities = 16/39 (41%), Positives = 29/39 (74%)
Frame = +3
Query: 108 QSQYRSLSNLTSKVIWIQSLLLELQCCPKCIRVLNCDNV 224
+S+Y++L+N T++++W+Q+LL ELQ + L CDN+
Sbjct: 738 ESEYKALANATAEIMWVQTLLTELQVQSPPMAKLWCDNL 776
>ref|XP_004966848.1| PREDICTED: uncharacterized protein LOC101777861 [Setaria italica]
Length = 2179
Score = 53.5 bits (127), Expect(2) = 1e-10
Identities = 23/36 (63%), Positives = 32/36 (88%)
Frame = +2
Query: 8 PNDRHSTTGFAVFLGGNLISWPSRKQPTVSRSTSKS 115
P+ R ST+G+AVFLG NLISW S++QPTVSRS++++
Sbjct: 1394 PDTRKSTSGYAVFLGDNLISWSSKRQPTVSRSSAEA 1429
Score = 37.7 bits (86), Expect(2) = 1e-10
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = +3
Query: 108 QSQYRSLSNLTSKVIWIQSLLLELQCCPKCIRVLNCDNVS 227
+++YR+++N ++ W++ LL EL+C + V+ CDNVS
Sbjct: 1428 EAEYRAVANGVAEACWLRQLLTELRCPLRRATVVYCDNVS 1467
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
Length = 1313
Score = 55.8 bits (133), Expect(2) = 1e-10
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +2
Query: 11 NDRHSTTGFAVFLGGNLISWPSRKQPTVSRSTSKS 115
+DR ST GFAVFLG NL+SW +RKQPTVSRS+++S
Sbjct: 1172 DDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTES 1206
Score = 35.4 bits (80), Expect(2) = 1e-10
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +3
Query: 108 QSQYRSLSNLTSKVIWIQSLLLELQCCPKCIRVLNCDNV 224
+S+Y++L+N T+++IW+Q LL E+ L CDN+
Sbjct: 1205 ESEYKALANATAELIWVQILLTEISIKSPRAAKLWCDNL 1243
>gb|AAM18766.1|AC099325_22 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
sativa Japonica Group]
Length = 1150
Score = 52.4 bits (124), Expect(2) = 1e-10
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +2
Query: 11 NDRHSTTGFAVFLGGNLISWPSRKQPTVSRSTSKS 115
+DR ST+GFAVFLG NLISW RKQ TVSRS++++
Sbjct: 923 DDRRSTSGFAVFLGSNLISWSVRKQATVSRSSTEA 957
Score = 38.9 bits (89), Expect(2) = 1e-10
Identities = 19/40 (47%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Frame = +3
Query: 108 QSQYRSLSNLTSKVIWIQSLLLELQC-CPKCIRVLNCDNV 224
+++Y++L+N T++VIW+Q+LL EL CP R L CDN+
Sbjct: 956 EAEYKALANATAEVIWVQTLLKELGIQCPSMAR-LWCDNL 994
>gb|ABB47033.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1142
Score = 52.4 bits (124), Expect(2) = 1e-10
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +2
Query: 11 NDRHSTTGFAVFLGGNLISWPSRKQPTVSRSTSKS 115
+DR ST+GFAVFLG NLISW RKQ TVSRS++++
Sbjct: 885 DDRRSTSGFAVFLGSNLISWSVRKQATVSRSSTEA 919
Score = 38.9 bits (89), Expect(2) = 1e-10
Identities = 19/40 (47%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Frame = +3
Query: 108 QSQYRSLSNLTSKVIWIQSLLLELQC-CPKCIRVLNCDNV 224
+++Y++L+N T++VIW+Q+LL EL CP R L CDN+
Sbjct: 918 EAEYKALANATAEVIWVQTLLKELGIQCPSMAR-LWCDNL 956
>gb|AAL86510.1|AC099040_14 putative retrotransposon protein [Oryza sativa Japonica Group]
Length = 1139
Score = 52.4 bits (124), Expect(2) = 1e-10
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +2
Query: 11 NDRHSTTGFAVFLGGNLISWPSRKQPTVSRSTSKS 115
+DR ST+GFAVFLG NLISW RKQ TVSRS++++
Sbjct: 891 DDRRSTSGFAVFLGSNLISWSVRKQATVSRSSTEA 925
Score = 38.9 bits (89), Expect(2) = 1e-10
Identities = 19/40 (47%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Frame = +3
Query: 108 QSQYRSLSNLTSKVIWIQSLLLELQC-CPKCIRVLNCDNV 224
+++Y++L+N T++VIW+Q+LL EL CP R L CDN+
Sbjct: 924 EAEYKALANATAEVIWVQTLLKELGIQCPSMAR-LWCDNL 962
>emb|CAE05450.3| OSJNBa0073E02.10 [Oryza sativa Japonica Group]
Length = 1131
Score = 50.8 bits (120), Expect(2) = 1e-10
Identities = 23/35 (65%), Positives = 30/35 (85%)
Frame = +2
Query: 11 NDRHSTTGFAVFLGGNLISWPSRKQPTVSRSTSKS 115
+DR ST GFA+FLG NLISW +RKQ TVSRS++++
Sbjct: 774 DDRRSTGGFAIFLGFNLISWSARKQATVSRSSTEA 808
Score = 40.4 bits (93), Expect(2) = 1e-10
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +3
Query: 108 QSQYRSLSNLTSKVIWIQSLLLELQCCPKCIRVLNCDNV 224
+++Y++L+N T++VIWIQ+LL EL VL CDN+
Sbjct: 807 EAEYKALANATAEVIWIQTLLKELGVSQPKAAVLWCDNI 845
>emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]
Length = 1087
Score = 50.8 bits (120), Expect(2) = 1e-10
Identities = 23/35 (65%), Positives = 30/35 (85%)
Frame = +2
Query: 11 NDRHSTTGFAVFLGGNLISWPSRKQPTVSRSTSKS 115
+DR ST GFA+FLG NLISW +RKQ TVSRS++++
Sbjct: 940 DDRRSTGGFAIFLGFNLISWSARKQATVSRSSTEA 974
Score = 40.4 bits (93), Expect(2) = 1e-10
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +3
Query: 108 QSQYRSLSNLTSKVIWIQSLLLELQCCPKCIRVLNCDNV 224
+++Y++L+N T++VIWIQ+LL EL VL CDN+
Sbjct: 973 EAEYKALANATAEVIWIQTLLKELGVSQPKAAVLWCDNI 1011
>ref|XP_003560110.1| PREDICTED: uncharacterized protein LOC100846463 [Brachypodium
distachyon]
Length = 989
Score = 55.5 bits (132), Expect(2) = 2e-10
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +2
Query: 11 NDRHSTTGFAVFLGGNLISWPSRKQPTVSRSTSKS 115
+DR ST GFAVFLG NL+SW SRKQPTVSRS++++
Sbjct: 845 DDRRSTGGFAVFLGPNLVSWSSRKQPTVSRSSTEA 879
Score = 35.4 bits (80), Expect(2) = 2e-10
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +3
Query: 108 QSQYRSLSNLTSKVIWIQSLLLELQCCPKCIRVLNCDNV 224
+++Y+ L+N T++ IWIQS+L EL VL CDN+
Sbjct: 878 EAEYKVLANGTAEAIWIQSVLKELGVYQSRPPVLWCDNI 916
>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1431
Score = 53.5 bits (127), Expect(2) = 2e-10
Identities = 23/35 (65%), Positives = 31/35 (88%)
Frame = +2
Query: 11 NDRHSTTGFAVFLGGNLISWPSRKQPTVSRSTSKS 115
+DRHST GFAVF+G NL+SW +RKQ TVSRS++++
Sbjct: 1289 DDRHSTGGFAVFIGPNLVSWSARKQATVSRSSTEA 1323
Score = 37.0 bits (84), Expect(2) = 2e-10
Identities = 15/39 (38%), Positives = 29/39 (74%)
Frame = +3
Query: 108 QSQYRSLSNLTSKVIWIQSLLLELQCCPKCIRVLNCDNV 224
+++Y++L+N+T++++WIQ+LL EL I + CDN+
Sbjct: 1322 EAEYKALANVTAEIMWIQTLLHELGIQAPKIAKVWCDNI 1360