BLASTX nr result

ID: Cocculus23_contig00041352 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00041352
         (257 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF69810.1| pol protein [Picea abies]                               44   4e-06
ref|XP_006475543.1| PREDICTED: uncharacterized protein LOC102610...    38   6e-06

>gb|AAF69810.1| pol protein [Picea abies]
          Length = 148

 Score = 43.5 bits (101), Expect(2) = 4e-06
 Identities = 17/28 (60%), Positives = 25/28 (89%)
 Frame = -2

Query: 253 TLKYYADQRLNSFEQQKWLTKLLGFDLK 170
           +LKY+ +QRL+S EQQKW+TK+LG+D +
Sbjct: 18  SLKYFLEQRLSSEEQQKWVTKILGYDFE 45



 Score = 32.7 bits (73), Expect(2) = 4e-06
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = -1

Query: 173 EIVYHKGQENIAADALSRLYENSE 102
           EIVY KG++N+ ADALSR  E+ E
Sbjct: 45  EIVYKKGKQNVVADALSRKDEDVE 68


>ref|XP_006475543.1| PREDICTED: uncharacterized protein LOC102610887 [Citrus sinensis]
          Length = 1274

 Score = 38.1 bits (87), Expect(2) = 6e-06
 Identities = 15/28 (53%), Positives = 23/28 (82%)
 Frame = -2

Query: 253 TLKYYADQRLNSFEQQKWLTKLLGFDLK 170
           +LKY  +QR+++  QQKWLTKL+G+D +
Sbjct: 787 SLKYMLEQRISTPMQQKWLTKLIGYDFE 814



 Score = 37.4 bits (85), Expect(2) = 6e-06
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
 Frame = -1

Query: 173 EIVYHKGQENIAADALSRLYENSE---LHYFFTPIFHDMSSIVLDSQQDAKLQKLT*EV 6
           EI++  G+EN AADALSRL E++E   +     PI   +  +  + Q D ++QKL  E+
Sbjct: 814 EIIFRSGRENKAADALSRLQESTENAMVMAISLPIGVWVEQLKQEWQHDPEIQKLIQEI 872


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