BLASTX nr result
ID: Cocculus23_contig00041233
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00041233
(536 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcript... 64 9e-16
ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204... 57 6e-13
ref|XP_002877469.1| predicted protein [Arabidopsis lyrata subsp.... 49 1e-12
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 54 3e-12
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 56 6e-12
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ... 54 7e-12
gb|AAD26953.1| putative non-LTR retrolelement reverse transcript... 55 7e-12
dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidop... 54 7e-12
gb|ABD96948.1| hypothetical protein [Cleome spinosa] 48 2e-11
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana] 56 3e-11
ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, part... 55 4e-11
ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcript... 47 7e-11
gb|ABK28243.1| unknown [Arabidopsis thaliana] 47 7e-11
gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thali... 47 7e-11
ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcript... 47 9e-11
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 53 1e-10
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 57 2e-10
ref|XP_002865536.1| hypothetical protein ARALYDRAFT_917542 [Arab... 50 1e-09
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 52 1e-09
ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcript... 50 2e-09
>ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|332005241|gb|AED92624.1| RNA-directed DNA polymerase
(reverse transcriptase)-related family protein
[Arabidopsis thaliana]
Length = 295
Score = 64.3 bits (155), Expect(2) = 9e-16
Identities = 33/70 (47%), Positives = 42/70 (60%)
Frame = +2
Query: 314 KRLPTGDRLRRMGLDVDRNCVFCWNNVETHDHIFFECSFSHAIWQALLMKISSSSRAGTS 493
+RLPT DRLR G+++ + V C N ETH H+FFECSFS AIW+ K S G
Sbjct: 150 ERLPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFECSFSLAIWEFFASKFRPSPPFGL- 208
Query: 494 WQRKASWILR 523
+SWIL+
Sbjct: 209 -PAASSWILQ 217
Score = 44.7 bits (104), Expect(2) = 9e-16
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +1
Query: 154 DSVVWKIDQAGI----FTLKSAWGLIRSQNQPCPWAKLTWFKCHIPRHSVTLWKMVKKKT 321
DS +W+ + AG F+ + W IR + PWAK+ WFK +IPR S+ W ++
Sbjct: 94 DSFLWR-NAAGSYLPSFSSRDTWEQIRVHSPTVPWAKVVWFKEYIPRFSLITWMSFLERL 152
Query: 322 P 324
P
Sbjct: 153 P 153
>ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204314 [Cucumis sativus]
Length = 282
Score = 57.4 bits (137), Expect(2) = 6e-13
Identities = 28/69 (40%), Positives = 37/69 (53%)
Frame = +2
Query: 311 KKRLPTGDRLRRMGLDVDRNCVFCWNNVETHDHIFFECSFSHAIWQALLMKISSSSRAGT 490
+ RL T RL R + +C+ C N E+ DH+FF C F IW +L+ SSS R G
Sbjct: 148 RDRLGTRGRLSRWDRSIPLSCLLCGGNYESRDHLFFSCHFGWEIWSRILLLKSSSHRTG- 206
Query: 491 SWQRKASWI 517
W + SWI
Sbjct: 207 YWGVELSWI 215
Score = 42.0 bits (97), Expect(2) = 6e-13
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 139 SPNSSDSVVWKIDQAGIFTLKSAWGLIRSQNQPCPWAKLTWFKCHIPRHSVTLWKMVKKK 318
SP+ D VW F++ SAW IR + W+ L W +IP+HS W ++ +
Sbjct: 91 SPSVEDRWVWVPGSHDSFSITSAWETIRPHSSRVGWSGLLWGGGNIPKHSFCAWLAIRDR 150
>ref|XP_002877469.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323307|gb|EFH53728.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 328
Score = 49.3 bits (116), Expect(2) = 1e-12
Identities = 23/67 (34%), Positives = 37/67 (55%)
Frame = +2
Query: 317 RLPTGDRLRRMGLDVDRNCVFCWNNVETHDHIFFECSFSHAIWQALLMKISSSSRAGTSW 496
R PT DRL G DV+ +C+ C E+ +H+FF C FS +W+ + ++ SS + W
Sbjct: 222 RNPTLDRLSSWGYDVELDCLLCGLAHESRNHLFFNCVFSVEVWRLITQRLHISS-SPLLW 280
Query: 497 QRKASWI 517
+ W+
Sbjct: 281 DQILLWL 287
Score = 48.9 bits (115), Expect(2) = 1e-12
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 145 NSSDSVVWKIDQAGI----FTLKSAWGLIRSQNQPCPWAKLTWFKCHIPRHSVTLWKMVK 312
+S+D++VW +D GI F+ K+ W +R WA L W K IPRH +T W +
Sbjct: 163 SSNDTLVWAVD--GIPYKHFSSKAVWNAVRISKPVNYWAPLVWHKAAIPRHVITSWLFIL 220
Query: 313 KKTP 324
+ P
Sbjct: 221 NRNP 224
>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
putative protein [Arabidopsis thaliana]
Length = 473
Score = 54.3 bits (129), Expect(2) = 3e-12
Identities = 26/71 (36%), Positives = 39/71 (54%)
Frame = +2
Query: 317 RLPTGDRLRRMGLDVDRNCVFCWNNVETHDHIFFECSFSHAIWQALLMKISSSSRAGTSW 496
RL TGDR+ + VD C+ C +E+ DH+FF C F+ IW+ L I ++ T W
Sbjct: 329 RLSTGDRMTLWNMGVDATCILCNKALESRDHLFFSCPFATEIWEPLAKTIYNTC-FYTDW 387
Query: 497 QRKASWILRNF 529
Q + + RN+
Sbjct: 388 QTIINNVSRNW 398
Score = 42.7 bits (99), Expect(2) = 3e-12
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Frame = +1
Query: 1 VEKYGENCRRGSGLARQATV----NDLQRVALNSDLITDLKVQLANRHNTSPNSSDSVVW 168
++ G+ G+ + ATV + +R ++ + ++ +L N+ + D +W
Sbjct: 217 IDSAGDRGAIDLGINKHATVVEAWGNRRRRRHRTNFLNRVEERLILSWNSRNQAEDRALW 276
Query: 169 KIDQ---AGIFTLKSAWGLIRSQNQPCPWAKLTWFKCHIPRHSVTLWKMVKKK 318
K + IF+ K W IR+ + W K WF IP+H+ +W V +
Sbjct: 277 KGKENRFRSIFSTKDTWNHIRTVSNKVAWYKGVWFAQAIPKHAFCMWLAVHNR 329
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 56.2 bits (134), Expect(2) = 6e-12
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Frame = +2
Query: 317 RLPTGDRLRRMGLDVDRNCVFCWNNVETHDHIFFECSFSHAIWQALLMKISSSSRAGTSW 496
RLPTGDR+ + +C+FC +ET DH+FF CSF+ IW L I + + W
Sbjct: 1080 RLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIWVDLARGIFKTQYT-SHW 1138
Query: 497 Q-----------RKASWILRNF 529
Q + W LR +
Sbjct: 1139 QSIIEAITNSQHHRVEWFLRRY 1160
Score = 39.7 bits (91), Expect(2) = 6e-12
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Frame = +1
Query: 1 VEKYGENCRRGSGLARQATV-----NDLQRVALNSDLITDLKVQLANRHNTSPNSSDSVV 165
+E+ G+ G++R+ TV N QR N D+ ++ L +T + D V+
Sbjct: 968 LERTGDRGLIDLGISRRMTVEEAWTNRRQRRHRN-DVYNVIEDALKKSWDTRTETEDKVL 1026
Query: 166 WKIDQ---AGIFTLKSAWGLIRSQNQPCPWAKLTWFKCHIPRHSVTLWKMVKKKTP 324
W+ F+ + W RS + PW K+ WF P++S W + P
Sbjct: 1027 WRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLP 1082
>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 637
Score = 53.5 bits (127), Expect(2) = 7e-12
Identities = 27/60 (45%), Positives = 34/60 (56%)
Frame = +2
Query: 317 RLPTGDRLRRMGLDVDRNCVFCWNNVETHDHIFFECSFSHAIWQALLMKISSSSRAGTSW 496
RL TGDRL + + CVFC +ET DH+FF C +S IW A L K + R +SW
Sbjct: 303 RLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCPYSSQIWIA-LAKGLLNGRNVSSW 361
Score = 42.4 bits (98), Expect(2) = 7e-12
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Frame = +1
Query: 37 GLARQATVNDL----QRVALNSDLITDLKVQLANRHNTSPNSSDSVVWKIDQ---AGIFT 195
G+A QATV ++ +R +D + ++ + SD +WK + G F+
Sbjct: 203 GIATQATVAEVLDTHRRKRHRADFLNQIENHIELVRQARSQESDRSLWKQKEDSFKGSFS 262
Query: 196 LKSAWGLIRSQNQPCPWAKLTWFKCHIPRHSVTLW 300
W IR+ + C W + WF P++S W
Sbjct: 263 SPKTWQQIRTISNECEWYRGVWFPSSTPKYSFVTW 297
>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 323
Score = 55.5 bits (132), Expect(2) = 7e-12
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +2
Query: 314 KRLPTGDRLRRMGLDVDRNCVFCWNNVETHDHIFFECSFSHAIWQALLMK 463
KRL T DRL + GL++ CV C ETHDH+FF+C FS+ IW +++
Sbjct: 177 KRLHTRDRLTQWGLNIPTVCVLCNVVDETHDHLFFQCQFSNEIWSFFMIR 226
Score = 40.4 bits (93), Expect(2) = 7e-12
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 18/124 (14%)
Frame = +1
Query: 1 VEKYGENCRRGSGLARQATVNDLQR---------------VALNSDLITDLKVQLANRHN 135
++ G N R G+ A V D R +AL ++ + + +H+
Sbjct: 61 IDLTGTNGPRSVGMPLNAVVRDALRGDNWWLSSSRSRNPSIALLKSVLPSSESMIECQHD 120
Query: 136 TSPNSSDSVVWKIDQ---AGIFTLKSAWGLIRSQNQPCPWAKLTWFKCHIPRHSVTLWKM 306
D WK D + IF+ W + PW K WFK IP+H+ W
Sbjct: 121 ------DVYKWKPDHHAPSNIFSASKTWTALNPDGVLVPWQKSVWFKDRIPKHAFICWVA 174
Query: 307 VKKK 318
K+
Sbjct: 175 AWKR 178
>dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidopsis thaliana]
Length = 278
Score = 53.5 bits (127), Expect(2) = 7e-12
Identities = 27/60 (45%), Positives = 34/60 (56%)
Frame = +2
Query: 317 RLPTGDRLRRMGLDVDRNCVFCWNNVETHDHIFFECSFSHAIWQALLMKISSSSRAGTSW 496
RL TGDRL + + CVFC +ET DH+FF C +S IW A L K + R +SW
Sbjct: 135 RLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCPYSSQIWIA-LAKGLLNGRNVSSW 193
Score = 42.4 bits (98), Expect(2) = 7e-12
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Frame = +1
Query: 37 GLARQATVNDL----QRVALNSDLITDLKVQLANRHNTSPNSSDSVVWKIDQ---AGIFT 195
G+A QATV ++ +R +D + ++ + SD +WK + G F+
Sbjct: 35 GIATQATVAEVLDTHRRKRHRADFLNQIENHIELVRQARSQESDRSLWKQKEDSFKGSFS 94
Query: 196 LKSAWGLIRSQNQPCPWAKLTWFKCHIPRHSVTLW 300
W IR+ + C W + WF P++S W
Sbjct: 95 SPKTWQQIRTISNECEWYRGVWFPSSTPKYSFVTW 129
>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
Length = 539
Score = 47.8 bits (112), Expect(2) = 2e-11
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +2
Query: 317 RLPTGDRLRRMGLDVDRNCVFCWNNVETHDHIFFECSFSHAIWQ 448
RLPT DRL++ G+ D C C E+H H+FF C+++ +W+
Sbjct: 452 RLPTKDRLQQWGITSDATCRLCDGEDESHQHLFFGCTYASHLWR 495
Score = 46.2 bits (108), Expect(2) = 2e-11
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +1
Query: 82 LNSDLITDLKVQLANRHNTSPNS-SDSVVWKIDQAGI---FTLKSAWGLIRSQNQPCPWA 249
+ SD + + ++ SP+ SDS +WK + F+ W L R+ + PW+
Sbjct: 370 VRSDRLQQVLAHISTIPPPSPDGPSDSALWKYKEEDFRPYFSSSRTWNLTRTVHVIAPWS 429
Query: 250 KLTWFKCHIPRHSVTLWKMVKKKTP 324
+ WF IPRH+ W+++ + P
Sbjct: 430 SIVWFPLAIPRHAFLHWQVMLFRLP 454
>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
Length = 478
Score = 55.8 bits (133), Expect(2) = 3e-11
Identities = 24/54 (44%), Positives = 31/54 (57%)
Frame = +2
Query: 311 KKRLPTGDRLRRMGLDVDRNCVFCWNNVETHDHIFFECSFSHAIWQALLMKISS 472
K RL TGDR+ D +CV C + VET DH+FF C +S +W L K+ S
Sbjct: 334 KNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEVWSTLTRKLLS 387
Score = 37.7 bits (86), Expect(2) = 3e-11
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Frame = +1
Query: 49 QATVNDLQRVALNSDLITDLKVQLANRHNTSPNSSDSVVWKIDQ---AGIFTLKSAWGLI 219
+A VN R + L+ V RH + D+V WK + F K W
Sbjct: 244 EAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAAT 303
Query: 220 RSQNQPCPWAKLTWFKCHIPRHSVTLWKMVKKK 318
R W K WF P++SV W +K +
Sbjct: 304 REPKLKVNWYKGVWFSHATPKYSVLAWIAIKNR 336
>ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, partial [Capsella rubella]
gi|482569649|gb|EOA33837.1| hypothetical protein
CARUB_v10021318mg, partial [Capsella rubella]
Length = 290
Score = 54.7 bits (130), Expect(2) = 4e-11
Identities = 23/58 (39%), Positives = 35/58 (60%)
Frame = +2
Query: 311 KKRLPTGDRLRRMGLDVDRNCVFCWNNVETHDHIFFECSFSHAIWQALLMKISSSSRA 484
+ RL T DRLR G++V C+ C ++ E+ H+FFEC++SH +W + S S A
Sbjct: 135 RNRLTTRDRLRGWGMNVPSECLLCTSSAESRLHLFFECAYSHEVWSSFFTHPSLSPPA 192
Score = 38.5 bits (88), Expect(2) = 4e-11
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +1
Query: 151 SDSVVWKI---DQAGIFTLKSAWGLIRSQNQPCPWAKLTWFKCHIPRHSVTLWKMVKKK 318
SD +W+ + G+F+ W PW K WFK IP+H+ W +++ +
Sbjct: 79 SDFFLWRNSPNEPPGVFSTSKTWISTHPAGPLVPWFKSVWFKERIPKHAFISWVVIRNR 137
>ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|5732057|gb|AAD48956.1|AF149414_5 contains similarity
to a family of Arabidopsis thaliana predicted proteins,
which have similarity to reverse transcriptases; see
T14P8.10 (GB:AF069298) [Arabidopsis thaliana]
gi|7267223|emb|CAB80830.1| AT4g04650 [Arabidopsis
thaliana] gi|332657009|gb|AEE82409.1| RNA-directed DNA
polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
Length = 332
Score = 46.6 bits (109), Expect(2) = 7e-11
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 154 DSVVWKID---QAGIFTLKSAWGLIRSQNQPCPWAKLTWFKCHIPRHSVTLW 300
DS +WK D + F+ W + Q+ PW K WFK H+P+H+ W
Sbjct: 96 DSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICW 147
Score = 45.8 bits (107), Expect(2) = 7e-11
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +2
Query: 317 RLPTGDRLRRMGLDVDRNCVFCWNNVETHDHIFFECSFSHAIWQ 448
RL T DRL+ GL + C+ C + ++ H+FFEC FS +W+
Sbjct: 153 RLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWR 196
>gb|ABK28243.1| unknown [Arabidopsis thaliana]
Length = 297
Score = 46.6 bits (109), Expect(2) = 7e-11
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 154 DSVVWKID---QAGIFTLKSAWGLIRSQNQPCPWAKLTWFKCHIPRHSVTLW 300
DS +WK D + F+ W + Q+ PW K WFK H+P+H+ W
Sbjct: 96 DSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICW 147
Score = 45.8 bits (107), Expect(2) = 7e-11
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +2
Query: 317 RLPTGDRLRRMGLDVDRNCVFCWNNVETHDHIFFECSFSHAIWQ 448
RL T DRL+ GL + C+ C + ++ H+FFEC FS +W+
Sbjct: 153 RLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWR 196
>gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thaliana]
Length = 296
Score = 46.6 bits (109), Expect(2) = 7e-11
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 154 DSVVWKID---QAGIFTLKSAWGLIRSQNQPCPWAKLTWFKCHIPRHSVTLW 300
DS +WK D + F+ W + Q+ PW K WFK H+P+H+ W
Sbjct: 96 DSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICW 147
Score = 45.8 bits (107), Expect(2) = 7e-11
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +2
Query: 317 RLPTGDRLRRMGLDVDRNCVFCWNNVETHDHIFFECSFSHAIWQ 448
RL T DRL+ GL + C+ C + ++ H+FFEC FS +W+
Sbjct: 153 RLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWR 196
>ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|332193871|gb|AEE31992.1| RNA-directed DNA polymerase
(reverse transcriptase)-related family protein
[Arabidopsis thaliana]
Length = 320
Score = 47.4 bits (111), Expect(2) = 9e-11
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +2
Query: 317 RLPTGDRLRRMGLDVDRNCVFCWNNVETHDHIFFECSFSHAIWQ 448
RL T DRLR GL + C+ C ++ E+ H+FFEC F A+W+
Sbjct: 175 RLHTRDRLRSWGLSIPAVCLLCNSHDESRAHLFFECPFCGAVWR 218
Score = 44.7 bits (104), Expect(2) = 9e-11
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 154 DSVVWKID---QAGIFTLKSAWGLIRSQNQPCPWAKLTWFKCHIPRHSVTLW 300
DS +WK D + IF+ + QN PW K WFK H+P+H+ W
Sbjct: 118 DSFIWKTDLHAPSNIFSTAKTSLALHPQNHIVPWYKAVWFKNHVPKHAFICW 169
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 52.8 bits (125), Expect(2) = 1e-10
Identities = 24/72 (33%), Positives = 34/72 (47%)
Frame = +2
Query: 317 RLPTGDRLRRMGLDVDRNCVFCWNNVETHDHIFFECSFSHAIWQALLMKISSSSRAGTSW 496
RLPT RL G+ +C C + E+ DH+ C FS IW+ + +++ S SW
Sbjct: 946 RLPTRQRLAAWGVTTTTDCCLCSSRPESRDHLLLYCVFSAVIWKLVFFRLTPSQAIFNSW 1005
Query: 497 QRKASWILRNFS 532
SW N S
Sbjct: 1006 AELLSWTRINSS 1017
Score = 38.9 bits (89), Expect(2) = 1e-10
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 145 NSSDSVVWKIDQAGI--FTLKSAWGLIRSQNQPCPWAKLTWFKCHIPRHSVTLW 300
+S D+ VW +D F+ W +R + W K WFK +P+H+ +W
Sbjct: 887 SSPDTFVWIVDDFTCHGFSAARTWEAMRPKKPVKDWTKSVWFKGSVPKHAFNMW 940
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 57.0 bits (136), Expect(2) = 2e-10
Identities = 26/69 (37%), Positives = 38/69 (55%)
Frame = +2
Query: 311 KKRLPTGDRLRRMGLDVDRNCVFCWNNVETHDHIFFECSFSHAIWQALLMKISSSSRAGT 490
+ RL TG R++ D C FC ++ET DH+FF CS++ AIW A+ + R T
Sbjct: 484 RNRLSTGYRMQLWNNGSDVKCTFCSTSIETRDHLFFSCSYASAIWTAIAKNV-LQHRFST 542
Query: 491 SWQRKASWI 517
WQ ++I
Sbjct: 543 DWQTIVNYI 551
Score = 33.9 bits (76), Expect(2) = 2e-10
Identities = 20/103 (19%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Frame = +1
Query: 37 GLARQATV----NDLQRVALNSDLITDLKVQLANRHNT-SPNSSDSVVWKIDQAGIF--- 192
G++R TV ++ +R ++ + D++ L ++ T + D+ +W+ + +F
Sbjct: 385 GISRNKTVAEAWSNRRRRKHRTEQLNDIEAALNQKYQTRNLLREDATLWR-GKGDVFKTS 443
Query: 193 -TLKSAWGLIRSQNQPCPWAKLTWFKCHIPRHSVTLWKMVKKK 318
+ K W +R ++ W K WF P++ W ++ +
Sbjct: 444 FSTKDTWNQVRKKSNEVAWYKGVWFSHSTPKYQFCTWLALRNR 486
>ref|XP_002865536.1| hypothetical protein ARALYDRAFT_917542 [Arabidopsis lyrata subsp.
lyrata] gi|297311371|gb|EFH41795.1| hypothetical protein
ARALYDRAFT_917542 [Arabidopsis lyrata subsp. lyrata]
Length = 227
Score = 50.4 bits (119), Expect(2) = 1e-09
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +2
Query: 311 KKRLPTGDRLRRMGLDVDRNCVFCWNNVETHDHIFFECSFSHAIWQALLMKI 466
K +L TG R+R G V++ CVFC E+ DH+FF C F+++IW L ++
Sbjct: 103 KDQLSTGTRMRAWG--VEQPCVFCRERDESRDHLFFACPFTYSIWSELTSRL 152
Score = 38.1 bits (87), Expect(2) = 1e-09
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = +1
Query: 154 DSVVWKI---DQAGIFTLKSAWGLIRSQNQPCPWAKLTWFKCHIPRHSVTLWKMVK 312
D +W+ D FT + W L+R W WF +PR+S +W VK
Sbjct: 48 DKPLWRYTLDDYDSSFTSRHTWNLLRKAKHKVLWHNSVWFPQRVPRYSFIVWLAVK 103
>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1449
Score = 52.4 bits (124), Expect(2) = 1e-09
Identities = 25/71 (35%), Positives = 37/71 (52%)
Frame = +2
Query: 317 RLPTGDRLRRMGLDVDRNCVFCWNNVETHDHIFFECSFSHAIWQALLMKISSSSRAGTSW 496
RL TGD++ + C+ C N E+ DH+FF CSFS +W+ I SS + T W
Sbjct: 1306 RLSTGDKMLLWNRGLQGTCLLCRNATESRDHLFFSCSFSSEVWEMSAKSIYKSSYS-TDW 1364
Query: 497 QRKASWILRNF 529
+ + I N+
Sbjct: 1365 RHLLTKIQENW 1375
Score = 35.8 bits (81), Expect(2) = 1e-09
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Frame = +1
Query: 1 VEKYGENCRRGSGLARQATV----NDLQRVALNSDLITDLKVQLANRHNTSPNSSDSVVW 168
VE G+ G++R+ T+ N ++ +++ ++ L + D +W
Sbjct: 1194 VEIAGDRGTIDMGISRKMTLEEAWNGRRQRRHRDNVLNQMEEALELTRQRRNGNDDVTLW 1253
Query: 169 K---IDQAGIFTLKSAWGLIRSQNQPCPWAKLTWFKCHIPRHSVTLWKMV 309
K D F+ K W R+ PW K WF P+ S +W V
Sbjct: 1254 KGKNDDYRHCFSTKETWNNTRTMGIEVPWHKGVWFTHSTPKFSFCVWLAV 1303
>ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcriptase)-related protein
[Arabidopsis thaliana] gi|332195602|gb|AEE33723.1|
RNA-directed DNA polymerase (reverse
transcriptase)-related protein [Arabidopsis thaliana]
Length = 289
Score = 50.1 bits (118), Expect(2) = 2e-09
Identities = 23/73 (31%), Positives = 33/73 (45%)
Frame = +2
Query: 317 RLPTGDRLRRMGLDVDRNCVFCWNNVETHDHIFFECSFSHAIWQALLMKISSSSRAGTSW 496
RLPT RL G +C C E+ DH+ F C F+ +W+ ++ R SW
Sbjct: 151 RLPTRQRLASWGHIQSFDCCLCTIETESRDHLLFSCEFAAQVWRLAFSRLCPRQRLFCSW 210
Query: 497 QRKASWILRNFSS 535
SW+ + SS
Sbjct: 211 AELLSWMRSSSSS 223
Score = 37.7 bits (86), Expect(2) = 2e-09
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +1
Query: 136 TSPNSSDSVVWKIDQAGIFTLKSAWGLIRSQNQPCPWAKLTWFKCHIPRHSVTLW 300
T +S D VV + G F+ W IR + WAK WFK +P+H+ +W
Sbjct: 92 TIEDSFDWVVGGVVCQG-FSSARTWDAIRPRAPELDWAKAVWFKGAVPKHAFNMW 145