BLASTX nr result
ID: Cocculus23_contig00040917
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00040917
(623 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AHC13197.1| polyprotein [Citrus endogenous pararetrovirus] 70 4e-10
ref|YP_008992013.1| polyprotein [Citrus endogenous pararetroviru... 70 5e-10
gb|AHC13200.1| polyprotein [Citrus endogenous pararetrovirus] 70 7e-10
ref|XP_006405665.1| hypothetical protein EUTSA_v10028343mg, part... 70 7e-10
ref|XP_004500104.1| PREDICTED: genome polyprotein-like [Cicer ar... 70 7e-10
ref|XP_006403349.1| hypothetical protein EUTSA_v10003417mg, part... 69 1e-09
ref|XP_004497811.1| PREDICTED: genome polyprotein-like [Cicer ar... 69 1e-09
ref|XP_006398074.1| hypothetical protein EUTSA_v10001103mg [Eutr... 69 1e-09
gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus] 68 3e-09
sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contain... 68 3e-09
ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]... 68 3e-09
ref|XP_006405193.1| hypothetical protein EUTSA_v10000496mg [Eutr... 67 4e-09
ref|XP_004499727.1| PREDICTED: genome polyprotein-like [Cicer ar... 65 1e-08
ref|XP_002317407.1| hypothetical protein POPTR_0011s07150g [Popu... 59 2e-06
ref|XP_006376643.1| hypothetical protein POPTR_0012s01890g [Popu... 58 3e-06
>gb|AHC13197.1| polyprotein [Citrus endogenous pararetrovirus]
Length = 1799
Score = 70.5 bits (171), Expect = 4e-10
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Frame = -3
Query: 393 PWFSLDNIPYDKWDAYFDHILS*LDTMQLKTPNIPEDTIIQECFARMSGILRSWFQFCSP 214
PWF+ D+IP KW + + + +D L++ E ++++E R +G LR WF P
Sbjct: 797 PWFTFDDIPSYKWRDRLNEMSAWIDLQMLRSGATTE-SVLREFATRFTGALRDWFDSLGP 855
Query: 213 TVKASLLSM-SIYDFWFQFKAEFCRDQNYKYEALKTDFFKMKCYSLQTKDLNKHYVRMVK 37
+ + + + +F D +EA + D+ MKC SL KDL+ HY RM
Sbjct: 856 YRQLQFVQLPEVSSALAILHDQFLGDPAAAFEAARRDYLSMKCCSLDAKDLDFHYKRMSL 915
Query: 36 AYHTLHGDRHP 4
++ L+G P
Sbjct: 916 LFYKLNGFNEP 926
>ref|YP_008992013.1| polyprotein [Citrus endogenous pararetrovirus]
gi|565672276|gb|AHC13194.1| polyprotein [Citrus
endogenous pararetrovirus]
Length = 1812
Score = 70.1 bits (170), Expect = 5e-10
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Frame = -3
Query: 393 PWFSLDNIPYDKWDAYFDHILS*LDTMQLKTPNIPEDTIIQECFARMSGILRSWFQFCSP 214
PWF+ D+IP KW + + + +D L++ E ++++E R +G LR WF P
Sbjct: 810 PWFTYDDIPSYKWRDRLNEMSAWIDLQMLRSGATTE-SVLREFATRFTGALRDWFDSLGP 868
Query: 213 TVKASLLSM-SIYDFWFQFKAEFCRDQNYKYEALKTDFFKMKCYSLQTKDLNKHYVRMVK 37
+ + + + +F D +EA + D+ MKC SL KDL+ HY RM
Sbjct: 869 YRQLQFVQLPEVSSALAILHDQFLGDPAAAFEAARRDYLSMKCCSLDAKDLDFHYKRMSL 928
Query: 36 AYHTLHGDRHP 4
++ L+G P
Sbjct: 929 LFYKLNGFNEP 939
>gb|AHC13200.1| polyprotein [Citrus endogenous pararetrovirus]
Length = 1701
Score = 69.7 bits (169), Expect = 7e-10
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Frame = -3
Query: 393 PWFSLDNIPYDKWDAYFDHILS*LDTMQLKTPNIPEDTIIQECFARMSGILRSWFQFCSP 214
PWF+ D++P KW + + + +D L++ E ++++E R +G LR WF P
Sbjct: 699 PWFTFDDLPSYKWRDRLNEMSAWIDLQMLRSGATTE-SVLREFATRFTGALRDWFDSLGP 757
Query: 213 TVKASLLSM-SIYDFWFQFKAEFCRDQNYKYEALKTDFFKMKCYSLQTKDLNKHYVRMVK 37
+ + + + +F D +EA + D+ MKC SL KDL+ HY RM
Sbjct: 758 YRQLQFVQLPEVSSALAILHDQFLGDPAAAFEAARRDYLSMKCCSLDAKDLDFHYKRMSL 817
Query: 36 AYHTLHGDRHP 4
++ L+G P
Sbjct: 818 LFYKLNGFNEP 828
>ref|XP_006405665.1| hypothetical protein EUTSA_v10028343mg, partial [Eutrema
salsugineum] gi|557106803|gb|ESQ47118.1| hypothetical
protein EUTSA_v10028343mg, partial [Eutrema salsugineum]
Length = 1104
Score = 69.7 bits (169), Expect = 7e-10
Identities = 37/128 (28%), Positives = 67/128 (52%)
Frame = -3
Query: 387 FSLDNIPYDKWDAYFDHILS*LDTMQLKTPNIPEDTIIQECFARMSGILRSWFQFCSPTV 208
F+ D+IP++KW+ D + +++ + +P + +IQ+ AR+SG L+ W+
Sbjct: 286 FTFDDIPFEKWNNRLDEFHAWMNSEAITSPL---ELVIQQFTARLSGALKEWWNSLGEYR 342
Query: 207 KASLLSMSIYDFWFQFKAEFCRDQNYKYEALKTDFFKMKCYSLQTKDLNKHYVRMVKAYH 28
+ + M I + EF + E L+ +FF KC SL+ +DL KH+ R + Y+
Sbjct: 343 QQQVYQMIIPLLLGEIHREFIGTPTHLKEQLQEEFFTAKCCSLKKRDLAKHFERQTRRYY 402
Query: 27 TLHGDRHP 4
L+G +P
Sbjct: 403 ALNGLNNP 410
>ref|XP_004500104.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 1170
Score = 69.7 bits (169), Expect = 7e-10
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
Frame = -3
Query: 393 PWFSLDNIPYDKWDAYFDHILS*LDTMQLKTPNIPEDTIIQECFARMSGILRSWFQFCSP 214
PWF+LD+IP W + LDT +KT II+E RM+G L+ W+ P
Sbjct: 250 PWFTLDDIPPSMWRKRLLEFGAWLDTQMMKT-GADTYNIIEEFCCRMTGTLKEWYHNLGP 308
Query: 213 TVKASLLSM-SIYDFWFQFKAEFCRDQNYKYEALKTDFFKMKCYSLQTKDLNKHYVRMVK 37
+ L + + +EF D + +F++M+C SL+ KDL +HY RM +
Sbjct: 309 LKQDELHRLVNTAAVLGILHSEFIGDMEIFDRKNRQEFYEMRCCSLKVKDLERHYQRMTQ 368
Query: 36 AYHTLHG 16
Y+ L+G
Sbjct: 369 RYYVLNG 375
>ref|XP_006403349.1| hypothetical protein EUTSA_v10003417mg, partial [Eutrema
salsugineum] gi|557104462|gb|ESQ44802.1| hypothetical
protein EUTSA_v10003417mg, partial [Eutrema salsugineum]
Length = 988
Score = 68.9 bits (167), Expect = 1e-09
Identities = 36/128 (28%), Positives = 67/128 (52%)
Frame = -3
Query: 387 FSLDNIPYDKWDAYFDHILS*LDTMQLKTPNIPEDTIIQECFARMSGILRSWFQFCSPTV 208
F+ D+IP++KW+ D + +++ + +P + +IQ+ AR+SG L+ W+
Sbjct: 153 FTFDDIPFEKWNDRLDEFHAWMNSEAITSPL---ELVIQQFTARLSGALKEWWNSLDEYR 209
Query: 207 KASLLSMSIYDFWFQFKAEFCRDQNYKYEALKTDFFKMKCYSLQTKDLNKHYVRMVKAYH 28
+ + +I + EF + E L+ +FF KC SL+ +DL KH+ R + Y+
Sbjct: 210 QQQVYQTTIPVLLGEIHREFIGTPTHLKEQLQEEFFTAKCCSLKKRDLAKHFERQTRRYY 269
Query: 27 TLHGDRHP 4
L+G +P
Sbjct: 270 ALNGLNNP 277
>ref|XP_004497811.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 1951
Score = 68.9 bits (167), Expect = 1e-09
Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 3/129 (2%)
Frame = -3
Query: 393 PWFSLDNIPYDKWDAYFDHILS*LDTMQLKTPNIPEDT--IIQECFARMSGILRSWFQFC 220
PWF+LD+IP W + LDT +KT DT II+E RM+G L+ W+
Sbjct: 810 PWFTLDDIPPSLWRKRLLEFGAWLDTQMMKTG---ADTYKIIEEFCCRMTGTLKEWYHNL 866
Query: 219 SPTVKASLLSM-SIYDFWFQFKAEFCRDQNYKYEALKTDFFKMKCYSLQTKDLNKHYVRM 43
P + L + + EF D + +FF+M+C SL+ KDL +HY RM
Sbjct: 867 GPLKQDELHRLVNTAAVLGILHNEFIGDMEIFDRKNRQEFFEMRCCSLKVKDLERHYQRM 926
Query: 42 VKAYHTLHG 16
+ Y+ L+G
Sbjct: 927 TQRYYVLNG 935
>ref|XP_006398074.1| hypothetical protein EUTSA_v10001103mg [Eutrema salsugineum]
gi|557099163|gb|ESQ39527.1| hypothetical protein
EUTSA_v10001103mg [Eutrema salsugineum]
Length = 1135
Score = 68.6 bits (166), Expect = 1e-09
Identities = 36/128 (28%), Positives = 67/128 (52%)
Frame = -3
Query: 387 FSLDNIPYDKWDAYFDHILS*LDTMQLKTPNIPEDTIIQECFARMSGILRSWFQFCSPTV 208
F+ D+IP++KW+ D + +++ + +P + +IQ+ AR+SG L+ W+
Sbjct: 792 FTFDDIPFEKWNDRLDEFHAWMNSEAITSPL---ELVIQQFTARLSGALKEWWNSLGEYR 848
Query: 207 KASLLSMSIYDFWFQFKAEFCRDQNYKYEALKTDFFKMKCYSLQTKDLNKHYVRMVKAYH 28
+ + +I + EF + E L+ +FF KC SL+ +DL KH+ R + Y+
Sbjct: 849 QQQVYQTTIPLLLGEIHREFIGTPTHLKEQLQEEFFTAKCCSLKKRDLAKHFERQTRRYY 908
Query: 27 TLHGDRHP 4
L+G +P
Sbjct: 909 ALNGLNNP 916
>gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus]
Length = 1886
Score = 67.8 bits (164), Expect = 3e-09
Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Frame = -3
Query: 387 FSLDNIPYDKWDAYFDHILS*LDTMQL--KTPNIPEDTIIQECFARMSGILRSWFQFCSP 214
FSLD+I KW + + T QL + P + I+ E AR+SG LR W+ P
Sbjct: 856 FSLDDISITKWPERIQDFHTWMLTKQLVEREPFL----ILSEFTARLSGTLREWWNSVGP 911
Query: 213 TVKASLLSMSIYDFWFQFK---AEFCRDQNYKYEALKTDFFKMKCYSLQTKDLNKHYVRM 43
K L+ DF + + + FC DQ+ E L+ F+MKC S K +++H+ RM
Sbjct: 912 DDKNRFLTSQ--DFTWNIRILYSYFCGDQSQNKEELRRQIFEMKCLSYDRKKIDRHFQRM 969
Query: 42 VKAYHTLHGD 13
+K ++ + GD
Sbjct: 970 IKLFYHIGGD 979
>sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement
protein; Short=MP; Contains: RecName: Full=Capsid
protein; Short=CP; Contains: RecName: Full=Aspartic
protease; Short=PR; Contains: RecName: Full=Reverse
transcriptase; Short=RT gi|34328896|gb|AAO67368.1|
polyprotein 1 [Petunia vein clearing virus]
Length = 2180
Score = 67.8 bits (164), Expect = 3e-09
Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Frame = -3
Query: 387 FSLDNIPYDKWDAYFDHILS*LDTMQL--KTPNIPEDTIIQECFARMSGILRSWFQFCSP 214
FSLD+I KW + + T QL + P + I+ E AR+SG LR W+ P
Sbjct: 856 FSLDDISITKWPERIQDFHTWMLTKQLVEREPFL----ILSEFTARLSGTLREWWNSVGP 911
Query: 213 TVKASLLSMSIYDFWFQFK---AEFCRDQNYKYEALKTDFFKMKCYSLQTKDLNKHYVRM 43
K L+ DF + + + FC DQ+ E L+ F+MKC S K +++H+ RM
Sbjct: 912 DDKNRFLTSQ--DFTWNIRILYSYFCGDQSQNKEELRRQIFEMKCLSYDRKKIDRHFQRM 969
Query: 42 VKAYHTLHGD 13
+K ++ + GD
Sbjct: 970 IKLFYHIGGD 979
>ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]
gi|82061579|sp|Q91DM0.1|POLG_PVCV1 RecName: Full=Genome
polyprotein; Contains: RecName: Full=Movement protein;
Short=MP; Contains: RecName: Full=Capsid protein;
Short=CP; Contains: RecName: Full=Aspartic protease;
Short=PR; Contains: RecName: Full=Reverse transcriptase;
Short=RT gi|14574598|gb|AAK68664.1| ORF I polyprotein
[petunia vein clearing virus]
Length = 2179
Score = 67.8 bits (164), Expect = 3e-09
Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Frame = -3
Query: 387 FSLDNIPYDKWDAYFDHILS*LDTMQL--KTPNIPEDTIIQECFARMSGILRSWFQFCSP 214
FSLD+I KW + + T QL + P + I+ E AR+SG LR W+ P
Sbjct: 855 FSLDDISITKWPERIQDFHTWMLTKQLVEREPFL----ILSEFTARLSGTLREWWNSVGP 910
Query: 213 TVKASLLSMSIYDFWFQFK---AEFCRDQNYKYEALKTDFFKMKCYSLQTKDLNKHYVRM 43
K L+ DF + + + FC DQ+ E L+ F+MKC S K +++H+ RM
Sbjct: 911 DDKNRFLTSQ--DFTWNIRILYSYFCGDQSQNKEELRRQIFEMKCLSYDRKKIDRHFQRM 968
Query: 42 VKAYHTLHGD 13
+K ++ + GD
Sbjct: 969 IKLFYHIGGD 978
>ref|XP_006405193.1| hypothetical protein EUTSA_v10000496mg [Eutrema salsugineum]
gi|557106321|gb|ESQ46646.1| hypothetical protein
EUTSA_v10000496mg [Eutrema salsugineum]
Length = 957
Score = 67.0 bits (162), Expect = 4e-09
Identities = 35/128 (27%), Positives = 66/128 (51%)
Frame = -3
Query: 387 FSLDNIPYDKWDAYFDHILS*LDTMQLKTPNIPEDTIIQECFARMSGILRSWFQFCSPTV 208
F+ D+IP++KW+ D + +++ + +P + +IQ+ R+SG L+ W+
Sbjct: 748 FTFDDIPFEKWNDRLDEFHAWMNSEAITSPL---ELVIQQFTTRLSGALKEWWNSLGEYR 804
Query: 207 KASLLSMSIYDFWFQFKAEFCRDQNYKYEALKTDFFKMKCYSLQTKDLNKHYVRMVKAYH 28
+ + +I + EF + E L+ +FF KC SL+ +DL KH+ R + Y+
Sbjct: 805 QQQVYQTTIPLLLGEIHREFIGTPTHLKEQLQEEFFTAKCCSLKKRDLAKHFERQTRRYY 864
Query: 27 TLHGDRHP 4
L+G +P
Sbjct: 865 ALNGLNNP 872
>ref|XP_004499727.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 1645
Score = 65.5 bits (158), Expect = 1e-08
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 6/131 (4%)
Frame = -3
Query: 390 WFSLDNIPYDKWDAYFDHILS*LDTMQLKTPNIPEDT--IIQECFARMSGILRSWFQ--- 226
WF+LD+IP W LDT +KT DT II+E RM+G L+ W+
Sbjct: 791 WFTLDDIPSSLWRKRLLEFGVWLDTQMMKTG---ADTYKIIEEFCCRMTGTLKEWYHNLG 847
Query: 225 -FCSPTVKASLLSMSIYDFWFQFKAEFCRDQNYKYEALKTDFFKMKCYSLQTKDLNKHYV 49
F + + + ++ EF D ++ +FF+M+C SL+ KDL +HY
Sbjct: 848 SFKQDELNRLMNTAAVLGILHN---EFIGDMEIFDRKIRQEFFEMRCCSLKVKDLQRHYQ 904
Query: 48 RMVKAYHTLHG 16
RM + Y+ L+G
Sbjct: 905 RMTQRYYVLNG 915
>ref|XP_002317407.1| hypothetical protein POPTR_0011s07150g [Populus trichocarpa]
gi|222860472|gb|EEE98019.1| hypothetical protein
POPTR_0011s07150g [Populus trichocarpa]
Length = 950
Score = 58.5 bits (140), Expect = 2e-06
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Frame = -3
Query: 390 WFSLDNIPYDKWDAYFDHILS*LDTMQLKTPNIPEDTIIQECFARMSGILRSWFQFCSPT 211
+F+LD+IP KW S L + LK D + Q+ A+ SG L WF
Sbjct: 674 YFTLDDIPQVKWRDRILEFHSWLTSYMLKDGATLRDAL-QQFSAKFSGTLWDWFHALGDY 732
Query: 210 -----VKASLLSMSIYDFWFQFKAEFCRDQNYKYEALKTDFFKMKCYSLQTKDLNKHYVR 46
V ++ LS ++ ++F E D+ E + ++FKMKC S DL +H+ +
Sbjct: 733 RQMQFVNSASLSEALGWLHYEFLGEALNDK----EIARYEYFKMKCCSYLRSDLERHFKK 788
Query: 45 MVKAYHTLHGDRHP 4
M + YH L G P
Sbjct: 789 MCRRYHILSGPDDP 802
>ref|XP_006376643.1| hypothetical protein POPTR_0012s01890g [Populus trichocarpa]
gi|550326181|gb|ERP54440.1| hypothetical protein
POPTR_0012s01890g [Populus trichocarpa]
Length = 1153
Score = 57.8 bits (138), Expect = 3e-06
Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 5/134 (3%)
Frame = -3
Query: 390 WFSLDNIPYDKWDAYFDHILS*LDTMQLKTPNIPEDTIIQECFARMSGILRSWFQFCSPT 211
+F+LD+IP KW S L + LK D + Q+ A+ SG L WF
Sbjct: 365 YFTLDDIPRVKWQDRILEFHSWLTSYMLKDGATLRDAL-QQFSAKFSGTLWDWFHALGDY 423
Query: 210 -----VKASLLSMSIYDFWFQFKAEFCRDQNYKYEALKTDFFKMKCYSLQTKDLNKHYVR 46
V ++ LS ++ ++F E D+ E + ++FKMKC S DL +H+
Sbjct: 424 RQMQFVNSASLSEALGWLHYEFLGEALNDK----EIARYEYFKMKCCSYLRSDLERHFKE 479
Query: 45 MVKAYHTLHGDRHP 4
M + YH L G P
Sbjct: 480 MCQRYHILFGPDDP 493