BLASTX nr result
ID: Cocculus23_contig00040746
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00040746
(832 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 307 e-106
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group] 301 e-106
gb|AAM15062.1| putative retroelement integrase [Arabidopsis thal... 308 e-104
emb|CAN77247.1| hypothetical protein VITISV_021658 [Vitis vinifera] 321 e-101
emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera] 326 e-101
gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea bat... 296 e-101
gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum] 297 e-100
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 287 3e-99
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 286 2e-98
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 281 1e-97
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 279 4e-97
emb|CAE02877.1| OSJNBb0022F23.14 [Oryza sativa Japonica Group] 279 7e-97
dbj|BAH80072.1| putative unclassified retrotransposon protein [O... 279 9e-97
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 278 1e-96
emb|CAE02303.2| OSJNBa0042F21.10 [Oryza sativa Japonica Group] 277 3e-96
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group] 279 3e-96
emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group] 276 8e-96
emb|CAE02411.2| OSJNBa0024J22.19 [Oryza sativa Japonica Group] 276 8e-96
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 274 5e-95
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 275 9e-95
>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 307 bits (787), Expect(2) = e-106
Identities = 146/202 (72%), Positives = 171/202 (84%)
Frame = +2
Query: 2 LHGSCIFSKIDLKSGYHQIRMKEGNEWKTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 181
LHGS IFSK+DLKSGYHQIRMKEG+EWKT FKT GLYEWLVMPFGLTNAPSTFMRLMNH
Sbjct: 990 LHGSSIFSKVDLKSGYHQIRMKEGDEWKTAFKTIQGLYEWLVMPFGLTNAPSTFMRLMNH 1049
Query: 182 VLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSVFDVLRREKLYANLTKCNFCMEKIIFI 361
VLRA+I +FV+VYFDDILVYSKSL EH+EHL+ V +VLR+EKLYANL KC F + ++F+
Sbjct: 1050 VLRAFIGRFVIVYFDDILVYSKSLEEHVEHLKMVLEVLRKEKLYANLKKCTFGTDNLVFL 1109
Query: 362 GYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNFSILAPSLMEVIK 541
G+VVS G+++DEEKVKAI++WP+ K+V EV+SFH L FYRRFVK+FS LA L EVIK
Sbjct: 1110 GFVVSTDGVKVDEEKVKAIREWPSPKSVGEVRSFHGLAGFYRRFVKDFSTLAAPLTEVIK 1169
Query: 542 KSVGFHWGNAQEHAFNFLKNRL 607
K+VGF W AQE AF LK +L
Sbjct: 1170 KNVGFKWEQAQEDAFQALKEKL 1191
Score = 106 bits (264), Expect(2) = e-106
Identities = 54/74 (72%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
Frame = +3
Query: 615 LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSEM--EHTWNYPI*DKE*YALVRAS 788
L+LPDFLKTFEIECDA G+GIG VLM + +PIAYFSE T NYP DKE YALVRA
Sbjct: 1197 LSLPDFLKTFEIECDASGVGIGVVLMQDKKPIAYFSEKLGGATLNYPTYDKELYALVRAL 1256
Query: 789 ETWQHYLWPKEFVI 830
+T QHYLWPKEFVI
Sbjct: 1257 QTGQHYLWPKEFVI 1270
>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1713
Score = 301 bits (772), Expect(2) = e-106
Identities = 141/202 (69%), Positives = 167/202 (82%)
Frame = +2
Query: 2 LHGSCIFSKIDLKSGYHQIRMKEGNEWKTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 181
L GS IFSKIDL+SG+HQIRMK G+EWKT FKTK+GLYEWLVMPFGLTNAPSTFMRLMNH
Sbjct: 801 LSGSMIFSKIDLRSGFHQIRMKIGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNH 860
Query: 182 VLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSVFDVLRREKLYANLTKCNFCMEKIIFI 361
VLRA+I +FVVVYFDDIL+YSK+L EH+ H+Q V DVLR+E+LYANL KC FC ++++F+
Sbjct: 861 VLRAFIGKFVVVYFDDILIYSKTLEEHVAHIQQVLDVLRKEQLYANLEKCTFCTDQVVFL 920
Query: 362 GYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNFSILAPSLMEVIK 541
G+VVSG GI++DE KVKAIKDWPT + V++VKSF L FYRRFV+ FS +A L E+ K
Sbjct: 921 GFVVSGLGIQVDESKVKAIKDWPTPENVSQVKSFRGLAGFYRRFVRGFSTIAAPLNELTK 980
Query: 542 KSVGFHWGNAQEHAFNFLKNRL 607
K V F WG QE AF LK RL
Sbjct: 981 KGVAFQWGEPQEKAFQELKKRL 1002
Score = 110 bits (275), Expect(2) = e-106
Identities = 54/74 (72%), Positives = 58/74 (78%), Gaps = 2/74 (2%)
Frame = +3
Query: 615 LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSEM--EHTWNYPI*DKE*YALVRAS 788
L LPDF KTFE+ECDA GIGIG VLM NG+P+AYFSE NY + DKE YALVRA
Sbjct: 1008 LVLPDFTKTFEVECDASGIGIGGVLMQNGQPVAYFSEKLGGAQLNYSVYDKELYALVRAL 1067
Query: 789 ETWQHYLWPKEFVI 830
ETWQHYLWPKEFVI
Sbjct: 1068 ETWQHYLWPKEFVI 1081
>gb|AAM15062.1| putative retroelement integrase [Arabidopsis thaliana]
Length = 1215
Score = 308 bits (790), Expect(2) = e-104
Identities = 145/202 (71%), Positives = 170/202 (84%)
Frame = +2
Query: 2 LHGSCIFSKIDLKSGYHQIRMKEGNEWKTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 181
LHGS IFSKIDLKSGYHQIRM EG+EWKT FKTK+GLYEWLVMPFGLT+APSTFMRLMNH
Sbjct: 499 LHGSSIFSKIDLKSGYHQIRMNEGDEWKTAFKTKHGLYEWLVMPFGLTHAPSTFMRLMNH 558
Query: 182 VLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSVFDVLRREKLYANLTKCNFCMEKIIFI 361
VLRA+I FV+VYFDDILVYS+SL EHIEHL SV +VLR+E+LYANL KC FC + ++F+
Sbjct: 559 VLRAFIGIFVIVYFDDILVYSESLREHIEHLDSVLNVLRKEELYANLKKCTFCTDNLVFL 618
Query: 362 GYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNFSILAPSLMEVIK 541
G+VVS G+++DEEKVKAI+DWP+ KTV EV+SFH L FYRRF K+FS + L EV+K
Sbjct: 619 GFVVSADGVKVDEEKVKAIRDWPSPKTVGEVRSFHGLAGFYRRFFKDFSTIVAPLTEVMK 678
Query: 542 KSVGFHWGNAQEHAFNFLKNRL 607
K VGF W AQE AF LK++L
Sbjct: 679 KDVGFKWEKAQEEAFQSLKDKL 700
Score = 97.4 bits (241), Expect(2) = e-104
Identities = 51/74 (68%), Positives = 56/74 (75%), Gaps = 2/74 (2%)
Frame = +3
Query: 615 LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSEM--EHTWNYPI*DKE*YALVRAS 788
L L +FLKTFEIECDA GIGIGAVLM + + IA+FSE T NYP DKE YALVRA
Sbjct: 706 LILSEFLKTFEIECDASGIGIGAVLMQDQKLIAFFSEKLGGATLNYPTYDKELYALVRAL 765
Query: 789 ETWQHYLWPKEFVI 830
+ WQHYLWPK FVI
Sbjct: 766 QRWQHYLWPKVFVI 779
>emb|CAN77247.1| hypothetical protein VITISV_021658 [Vitis vinifera]
Length = 1323
Score = 321 bits (823), Expect(2) = e-101
Identities = 150/203 (73%), Positives = 173/203 (85%)
Frame = +2
Query: 2 LHGSCIFSKIDLKSGYHQIRMKEGNEWKTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 181
LHGSC+F+KIDLKSGYHQIRMKEG+EWKT FKTKYGLYEWLVMPFGLTNAPSTFMRLMNH
Sbjct: 595 LHGSCVFTKIDLKSGYHQIRMKEGDEWKTXFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 654
Query: 182 VLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSVFDVLRREKLYANLTKCNFCMEKIIFI 361
L +I +FVVVYFDDILVYSK+L EHI HL V LR+EKLYANL K +FCM+K++F+
Sbjct: 655 ALHXFIGRFVVVYFDDILVYSKNLDEHINHLHCVLAXLRKEKLYANLKKFSFCMDKVVFL 714
Query: 362 GYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNFSILAPSLMEVIK 541
GYVVS GIE+DEEKVKAIK+WPT ++TEV+SFH L SFYRRFVK+FS LA L E++K
Sbjct: 715 GYVVSXKGIEVDEEKVKAIKEWPTPXSITEVRSFHGLASFYRRFVKDFSTLAAPLTEIVK 774
Query: 542 KSVGFHWGNAQEHAFNFLKNRLC 610
KSVGF WG+ Q+ AF +K RLC
Sbjct: 775 KSVGFKWGSEQDRAFIEIKERLC 797
Score = 76.3 bits (186), Expect(2) = e-101
Identities = 42/60 (70%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Frame = +3
Query: 603 GCA*LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSEMEH--TWNYPI*DKE*YAL 776
G L+LPDF KTFEIECDA GIGIGAVLM RPIAYFSE + T NYP DKE YAL
Sbjct: 798 GAPLLSLPDFSKTFEIECDASGIGIGAVLMQEKRPIAYFSEKLNGATLNYPTYDKELYAL 857
>emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera]
Length = 960
Score = 326 bits (835), Expect(2) = e-101
Identities = 152/203 (74%), Positives = 176/203 (86%)
Frame = +2
Query: 2 LHGSCIFSKIDLKSGYHQIRMKEGNEWKTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 181
LHGSC+F KIDLKSGYHQIRMKEG+EWKT FKTKYGLYEWLVMPFGLTNA STFMRLMNH
Sbjct: 278 LHGSCVFIKIDLKSGYHQIRMKEGDEWKTAFKTKYGLYEWLVMPFGLTNALSTFMRLMNH 337
Query: 182 VLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSVFDVLRREKLYANLTKCNFCMEKIIFI 361
VLRA+I +FVVVYFDDILVYSK+L EHI HL V +LR+EKLYANL KC+FCM+K++F+
Sbjct: 338 VLRAFIGRFVVVYFDDILVYSKNLDEHINHLHCVLAILRKEKLYANLKKCSFCMDKVVFL 397
Query: 362 GYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNFSILAPSLMEVIK 541
GYVVS GIE+DEEK+KAIK+WPT K++TEV+SFH L SFY RFVK+FS LA L E++K
Sbjct: 398 GYVVSAKGIEVDEEKLKAIKEWPTPKSITEVRSFHGLASFYFRFVKDFSTLAAPLTEIVK 457
Query: 542 KSVGFHWGNAQEHAFNFLKNRLC 610
KSVGF WG+ Q+ AF +K RLC
Sbjct: 458 KSVGFKWGSEQDRAFIEIKERLC 480
Score = 70.5 bits (171), Expect(2) = e-101
Identities = 39/60 (65%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Frame = +3
Query: 603 GCA*LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSEMEH--TWNYPI*DKE*YAL 776
G L+LP+F KTFEIECDA GIGI VLM RPIAYFSE + T NYP DKE YAL
Sbjct: 481 GAPLLSLPNFSKTFEIECDASGIGIATVLMQEKRPIAYFSEKLNGATLNYPTYDKELYAL 540
>gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
Length = 1358
Score = 296 bits (758), Expect(2) = e-101
Identities = 140/205 (68%), Positives = 168/205 (81%)
Frame = +2
Query: 2 LHGSCIFSKIDLKSGYHQIRMKEGNEWKTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 181
LHG+ IFSKIDL+ GYHQIRM++G+EWKT FKTK GLYEWLVMPFGLTNAPSTFMRLMNH
Sbjct: 741 LHGAKIFSKIDLRRGYHQIRMQKGDEWKTAFKTKNGLYEWLVMPFGLTNAPSTFMRLMNH 800
Query: 182 VLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSVFDVLRREKLYANLTKCNFCMEKIIFI 361
VLR +I +FVVVYFDDIL+YSK +HI HL+ VF VLRRE+LYANL KC F +E ++F+
Sbjct: 801 VLRNFIGKFVVVYFDDILIYSKDPQKHIIHLKEVFLVLRREQLYANLEKCYFGVESVVFL 860
Query: 362 GYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNFSILAPSLMEVIK 541
G++VS GIE+DE K++AI+DWPT KT T+V+SFH L SFYRRFVK+FS +A L E++K
Sbjct: 861 GFIVSSKGIEVDETKIQAIRDWPTPKTATKVRSFHGLASFYRRFVKDFSTIAAPLNELVK 920
Query: 542 KSVGFHWGNAQEHAFNFLKNRLCIA 616
K V F WG QE AF LK +LC A
Sbjct: 921 KDVKFEWGPKQEQAFQTLKEKLCSA 945
Score = 99.4 bits (246), Expect(2) = e-101
Identities = 52/74 (70%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Frame = +3
Query: 615 LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSE--MEHTWNYPI*DKE*YALVRAS 788
L+LP+F KTFEIECDA GIGIGAVLM G PIAYFSE NY DKE YALVR
Sbjct: 948 LSLPNFDKTFEIECDASGIGIGAVLMQEGHPIAYFSEKLSGPALNYSTYDKELYALVRTL 1007
Query: 789 ETWQHYLWPKEFVI 830
ETW+HYLW KEFVI
Sbjct: 1008 ETWEHYLWFKEFVI 1021
>gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]
Length = 1004
Score = 297 bits (760), Expect(2) = e-100
Identities = 136/202 (67%), Positives = 167/202 (82%)
Frame = +2
Query: 2 LHGSCIFSKIDLKSGYHQIRMKEGNEWKTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 181
L G+C+FSKIDLKSGYHQIR++EG+EWKT FKTK+GLYEW+VMPFGLTNAPSTFMRLMNH
Sbjct: 688 LFGACLFSKIDLKSGYHQIRIREGDEWKTAFKTKFGLYEWMVMPFGLTNAPSTFMRLMNH 747
Query: 182 VLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSVFDVLRREKLYANLTKCNFCMEKIIFI 361
VLR ++ +FVVVYFDDIL+YSK+L +H HL++V VLR E LYANL KC FC + +IF+
Sbjct: 748 VLREFLGKFVVVYFDDILIYSKNLDDHCIHLKAVLQVLRYENLYANLEKCVFCTDHVIFL 807
Query: 362 GYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNFSILAPSLMEVIK 541
G++VS G+ +DEEKVKAI++WP K V+EV+SFH L SFYRRFVK+FS LA L E+++
Sbjct: 808 GFIVSSKGVHVDEEKVKAIREWPPPKNVSEVRSFHGLASFYRRFVKDFSTLAAPLNEIVE 867
Query: 542 KSVGFHWGNAQEHAFNFLKNRL 607
K VGF WG QE AF LK +L
Sbjct: 868 KDVGFKWGEKQEQAFAALKEKL 889
Score = 94.7 bits (234), Expect(2) = e-100
Identities = 48/74 (64%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Frame = +3
Query: 615 LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSE--MEHTWNYPI*DKE*YALVRAS 788
LALP+F K+FEIECDA +GIGAVL+ G P+AYFSE NY DKE Y+LVRA
Sbjct: 895 LALPNFSKSFEIECDASNVGIGAVLLQEGHPLAYFSEKLKGAALNYSTYDKELYSLVRAL 954
Query: 789 ETWQHYLWPKEFVI 830
+TWQHYL PKEFVI
Sbjct: 955 QTWQHYLLPKEFVI 968
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 287 bits (734), Expect(2) = 3e-99
Identities = 131/202 (64%), Positives = 165/202 (81%)
Frame = +2
Query: 2 LHGSCIFSKIDLKSGYHQIRMKEGNEWKTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 181
L G+ +FSK+DL+SGYHQIRMK G+EWKT FKTK+GLYEWLVMPFGLTNAPSTFMRLMN
Sbjct: 801 LSGAIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNE 860
Query: 182 VLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSVFDVLRREKLYANLTKCNFCMEKIIFI 361
VLRA+I +FVVVYFDDIL+YSKS+ EH++H+++VF+ LR +L+ NL KC FC +++ F+
Sbjct: 861 VLRAFIGKFVVVYFDDILIYSKSMDEHVDHMRAVFNALRDARLFGNLEKCTFCTDRVSFL 920
Query: 362 GYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNFSILAPSLMEVIK 541
GYVV+ GIE+D+ KV+AI WP KT+T+V+SF L FYRRFVK+FS +A L E+ K
Sbjct: 921 GYVVTPQGIEVDQAKVEAIHGWPMPKTITQVRSFLGLAGFYRRFVKDFSTIAAPLNELTK 980
Query: 542 KSVGFHWGNAQEHAFNFLKNRL 607
K V F WG QEHAFN LK++L
Sbjct: 981 KGVHFSWGKVQEHAFNVLKDKL 1002
Score = 102 bits (255), Expect(2) = 3e-99
Identities = 50/74 (67%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Frame = +3
Query: 615 LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSE--MEHTWNYPI*DKE*YALVRAS 788
L LPDF KTFE+ECDA GIG+G VL+ G+P+AYFSE NY DKE YALVR
Sbjct: 1008 LQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGSVLNYSTYDKELYALVRTL 1067
Query: 789 ETWQHYLWPKEFVI 830
ETWQHYLWPKEFVI
Sbjct: 1068 ETWQHYLWPKEFVI 1081
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 286 bits (731), Expect(2) = 2e-98
Identities = 136/205 (66%), Positives = 165/205 (80%)
Frame = +2
Query: 2 LHGSCIFSKIDLKSGYHQIRMKEGNEWKTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 181
L GS IFSK+DL+SGYHQIRMK G+EWKT FKTK+GLYEWLVMPFGLTNAPSTFMRLMN
Sbjct: 842 LSGSTIFSKVDLRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNE 901
Query: 182 VLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSVFDVLRREKLYANLTKCNFCMEKIIFI 361
VLRA+I +FVVVYFDDIL+YSKSL EH+EHL++VF LR +L+ NL KC FC +++ F+
Sbjct: 902 VLRAFIGRFVVVYFDDILIYSKSLEEHLEHLRAVFIALRDARLFGNLGKCTFCTDRVSFL 961
Query: 362 GYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNFSILAPSLMEVIK 541
GYVV+ GIE+D+ K++AI+ WP KTVT+V+SF L FYRRFV++FS +A L EV K
Sbjct: 962 GYVVTPQGIEVDKAKIEAIESWPHPKTVTQVRSFLGLAGFYRRFVRDFSTIAAPLNEVTK 1021
Query: 542 KSVGFHWGNAQEHAFNFLKNRLCIA 616
K V F WG AQE AF LK++L A
Sbjct: 1022 KDVPFVWGTAQEEAFTVLKDKLTYA 1046
Score = 101 bits (251), Expect(2) = 2e-98
Identities = 49/74 (66%), Positives = 57/74 (77%), Gaps = 2/74 (2%)
Frame = +3
Query: 615 LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSE--MEHTWNYPI*DKE*YALVRAS 788
L LP+F KTFE+ECDA GIG+G VL+ +G+P+AYFSE + NY DKE YALVR
Sbjct: 1049 LQLPNFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKFSGPSLNYSTYDKELYALVRTL 1108
Query: 789 ETWQHYLWPKEFVI 830
ETWQHYLWPKEFVI
Sbjct: 1109 ETWQHYLWPKEFVI 1122
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 281 bits (719), Expect(2) = 1e-97
Identities = 130/202 (64%), Positives = 164/202 (81%)
Frame = +2
Query: 2 LHGSCIFSKIDLKSGYHQIRMKEGNEWKTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 181
L GS IFSK+DL+SGYHQIRMK G+EWKT FKTK+GLYEWLVMPFGLTNAPSTFMRLMN
Sbjct: 854 LSGSIIFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNE 913
Query: 182 VLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSVFDVLRREKLYANLTKCNFCMEKIIFI 361
VLRA+I +FVVVYFDDIL+YS+SL +H++HL++VF LR +L+ NL KC FC +++ F+
Sbjct: 914 VLRAFIGRFVVVYFDDILIYSRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFL 973
Query: 362 GYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNFSILAPSLMEVIK 541
GYVV+ GIE+D+ K++AI+ WP KTVT+V+SF L FYRRFV++FS +A L E+ K
Sbjct: 974 GYVVTPQGIEVDKAKIEAIESWPQPKTVTQVRSFLGLAGFYRRFVRDFSTIAAPLNELTK 1033
Query: 542 KSVGFHWGNAQEHAFNFLKNRL 607
K V + WG AQE AF LK++L
Sbjct: 1034 KDVPYSWGTAQEEAFTVLKDKL 1055
Score = 103 bits (256), Expect(2) = 1e-97
Identities = 50/74 (67%), Positives = 57/74 (77%), Gaps = 2/74 (2%)
Frame = +3
Query: 615 LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSE--MEHTWNYPI*DKE*YALVRAS 788
L LPDF KTFE+ECDA GIG+G VL+ +G+P+AYFSE + NY DKE YALVR
Sbjct: 1061 LQLPDFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKLSGPSLNYSTYDKELYALVRTL 1120
Query: 789 ETWQHYLWPKEFVI 830
ETWQHYLWPKEFVI
Sbjct: 1121 ETWQHYLWPKEFVI 1134
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 279 bits (714), Expect(2) = 4e-97
Identities = 129/202 (63%), Positives = 163/202 (80%)
Frame = +2
Query: 2 LHGSCIFSKIDLKSGYHQIRMKEGNEWKTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 181
L GS IFSK+DL+SGYHQIRMK G+EWKT FKTK+GLYEWLVMPFGLTNAPSTFMRLMN
Sbjct: 857 LSGSIIFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNE 916
Query: 182 VLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSVFDVLRREKLYANLTKCNFCMEKIIFI 361
VLRA+I +FVVVYFDDIL+YS+SL +H++HL++VF LR +L+ NL KC FC +++ F+
Sbjct: 917 VLRAFIGRFVVVYFDDILIYSRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFL 976
Query: 362 GYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNFSILAPSLMEVIK 541
GYVV+ GIE+D+ K++AI+ WP KTVT+V+SF FYRRFV++FS +A L E+ K
Sbjct: 977 GYVVTPQGIEVDKAKIEAIESWPQPKTVTQVRSFLGXAGFYRRFVRDFSTIAAPLNELTK 1036
Query: 542 KSVGFHWGNAQEHAFNFLKNRL 607
K V + WG AQE AF LK++L
Sbjct: 1037 KDVPYSWGTAQEEAFTVLKDKL 1058
Score = 103 bits (256), Expect(2) = 4e-97
Identities = 50/74 (67%), Positives = 57/74 (77%), Gaps = 2/74 (2%)
Frame = +3
Query: 615 LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSE--MEHTWNYPI*DKE*YALVRAS 788
L LPDF KTFE+ECDA GIG+G VL+ +G+P+AYFSE + NY DKE YALVR
Sbjct: 1064 LQLPDFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKLSGPSLNYSTYDKELYALVRTL 1123
Query: 789 ETWQHYLWPKEFVI 830
ETWQHYLWPKEFVI
Sbjct: 1124 ETWQHYLWPKEFVI 1137
>emb|CAE02877.1| OSJNBb0022F23.14 [Oryza sativa Japonica Group]
Length = 1431
Score = 279 bits (714), Expect(2) = 7e-97
Identities = 129/202 (63%), Positives = 165/202 (81%)
Frame = +2
Query: 2 LHGSCIFSKIDLKSGYHQIRMKEGNEWKTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 181
L GS +FSK+DL+SGYHQIRMK G+EWKT FKTK+GLYEWLVMPFGLTNAPSTFMRLMN
Sbjct: 743 LSGSIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNE 802
Query: 182 VLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSVFDVLRREKLYANLTKCNFCMEKIIFI 361
VLR +I +FVVVYFDDIL+YSKS+ EH +HL++VF+ LR +L+ NL KC FC +++ F+
Sbjct: 803 VLRPFIGKFVVVYFDDILIYSKSMGEHFKHLRAVFNALRDARLFGNLEKCTFCTDRVSFL 862
Query: 362 GYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNFSILAPSLMEVIK 541
GYVV+ GIE+D+ KV+AI+ WPT KTV++V+SF L FYRRFV++FS +A L + K
Sbjct: 863 GYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTK 922
Query: 542 KSVGFHWGNAQEHAFNFLKNRL 607
K V F WG +QE+AF+ LK++L
Sbjct: 923 KGVPFTWGTSQENAFHMLKDKL 944
Score = 102 bits (254), Expect(2) = 7e-97
Identities = 50/74 (67%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Frame = +3
Query: 615 LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSE--MEHTWNYPI*DKE*YALVRAS 788
L LPDF KTFE+ECDA GIG+G VL+ G+P+AYFSE NY DKE YALVR
Sbjct: 950 LQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLTGPVLNYSTYDKELYALVRTL 1009
Query: 789 ETWQHYLWPKEFVI 830
ETWQHYLWPKEFVI
Sbjct: 1010 ETWQHYLWPKEFVI 1023
>dbj|BAH80072.1| putative unclassified retrotransposon protein [Oryza sativa Indica
Group]
Length = 848
Score = 279 bits (713), Expect(2) = 9e-97
Identities = 129/202 (63%), Positives = 164/202 (81%)
Frame = +2
Query: 2 LHGSCIFSKIDLKSGYHQIRMKEGNEWKTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 181
L GS +FSK+DL+SGYHQIRMK G+EWKT FKTK+GLYEWLVMPFGLTNAPSTFMRLMN
Sbjct: 162 LSGSIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNE 221
Query: 182 VLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSVFDVLRREKLYANLTKCNFCMEKIIFI 361
VLR +I +FVVVYFDDIL+YSKS+ EH HL++VF+ LR +L+ NL KC FC +++ F+
Sbjct: 222 VLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFL 281
Query: 362 GYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNFSILAPSLMEVIK 541
GYVV+ GIE+D+ KV+AI+ WPT KTV++V+SF L FYRRFV++FS +A L + K
Sbjct: 282 GYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTK 341
Query: 542 KSVGFHWGNAQEHAFNFLKNRL 607
K V F WG +QE+AF+ LK++L
Sbjct: 342 KGVPFTWGTSQENAFHMLKDKL 363
Score = 102 bits (254), Expect(2) = 9e-97
Identities = 50/74 (67%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Frame = +3
Query: 615 LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSE--MEHTWNYPI*DKE*YALVRAS 788
L LPDF KTFE+ECDA GIG+G VL+ G+P+AYFSE NY DKE YALVR
Sbjct: 369 LQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTL 428
Query: 789 ETWQHYLWPKEFVI 830
ETWQHYLWPKEFVI
Sbjct: 429 ETWQHYLWPKEFVI 442
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 278 bits (712), Expect(2) = 1e-96
Identities = 129/202 (63%), Positives = 164/202 (81%)
Frame = +2
Query: 2 LHGSCIFSKIDLKSGYHQIRMKEGNEWKTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 181
L GS +FSK+DL+SGYHQIRMK G+EWKT FKTK+GLYEWLVMPFGLTNAPSTFMRLMN
Sbjct: 798 LSGSIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNE 857
Query: 182 VLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSVFDVLRREKLYANLTKCNFCMEKIIFI 361
VLR +I +FVVVYFDDIL+YSKS+ EH HL++VF+ LR +L+ NL KC FC +++ F+
Sbjct: 858 VLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFL 917
Query: 362 GYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNFSILAPSLMEVIK 541
GYVV+ GIE+D+ KV+AI+ WPT KTV++V+SF L FYRRFV++FS +A L + K
Sbjct: 918 GYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNVLTK 977
Query: 542 KSVGFHWGNAQEHAFNFLKNRL 607
K V F WG +QE+AF+ LK++L
Sbjct: 978 KGVPFTWGTSQENAFHMLKDKL 999
Score = 102 bits (254), Expect(2) = 1e-96
Identities = 50/74 (67%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Frame = +3
Query: 615 LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSE--MEHTWNYPI*DKE*YALVRAS 788
L LPDF KTFE+ECDA GIG+G VL+ G+P+AYFSE NY DKE YALVR
Sbjct: 1005 LQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTL 1064
Query: 789 ETWQHYLWPKEFVI 830
ETWQHYLWPKEFVI
Sbjct: 1065 ETWQHYLWPKEFVI 1078
Score = 172 bits (436), Expect(2) = 4e-51
Identities = 82/168 (48%), Positives = 114/168 (67%)
Frame = +2
Query: 104 YGLYEWLVMPFGLTNAPSTFMRLMNHVLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSV 283
YGLYE+ VM FGLTNAP+ FM LMN V Y+++FVVV+ DDILVYS+S +H HL+ V
Sbjct: 1624 YGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLV 1683
Query: 284 FDVLRREKLYANLTKCNFCMEKIIFIGYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSF 463
LR +LYA L+KC F + ++ F+G+V+S G+ +D E V A+ DW KTVT+++SF
Sbjct: 1684 LGKLREHQLYAKLSKCEFWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQIRSF 1743
Query: 464 HALVSFYRRFVKNFSILAPSLMEVIKKSVGFHWGNAQEHAFNFLKNRL 607
L +YRRF++NFS +A + +++KK F W E AF LK +L
Sbjct: 1744 LGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKL 1791
Score = 56.6 bits (135), Expect(2) = 4e-51
Identities = 31/67 (46%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +3
Query: 615 LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSEM--EHTWNYPI*DKE*YALVRAS 788
L LPD K F + CDA G+G VLM G +AY S H NYP D E A+V A
Sbjct: 1797 LILPDTRKDFMVYCDASPQGLGCVLMQEGHVVAYASRQLWPHEGNYPTHDLELAAVVHAL 1856
Query: 789 ETWQHYL 809
+ W+HYL
Sbjct: 1857 KIWRHYL 1863
>emb|CAE02303.2| OSJNBa0042F21.10 [Oryza sativa Japonica Group]
Length = 2388
Score = 277 bits (709), Expect(2) = 3e-96
Identities = 129/202 (63%), Positives = 163/202 (80%)
Frame = +2
Query: 2 LHGSCIFSKIDLKSGYHQIRMKEGNEWKTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 181
L GS +FSK DL+SGYHQIRMK G+EWKT FKTK+GLYEWLVMPFGLTNAPSTFMRLMN
Sbjct: 634 LSGSIVFSKADLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNE 693
Query: 182 VLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSVFDVLRREKLYANLTKCNFCMEKIIFI 361
VLR +I +FVVVYFDDIL+YSKS+ EH HL++VF+ LR +L+ NL KC FC +++ F+
Sbjct: 694 VLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFL 753
Query: 362 GYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNFSILAPSLMEVIK 541
GYVV+ GIE+D+ KV+AI+ WPT KTV++V+SF L FYRRFV++FS +A L + K
Sbjct: 754 GYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTK 813
Query: 542 KSVGFHWGNAQEHAFNFLKNRL 607
K V F WG +QE+AF+ LK++L
Sbjct: 814 KGVPFTWGTSQENAFHMLKDKL 835
Score = 102 bits (254), Expect(2) = 3e-96
Identities = 50/74 (67%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Frame = +3
Query: 615 LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSEMEH--TWNYPI*DKE*YALVRAS 788
L LPDF KTFE+ECDA GIG+G VL+ G+P+AYFSE NY DKE YALVR
Sbjct: 841 LQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGLVLNYSTYDKELYALVRTL 900
Query: 789 ETWQHYLWPKEFVI 830
ETWQHYLWPKEFVI
Sbjct: 901 ETWQHYLWPKEFVI 914
Score = 88.2 bits (217), Expect(2) = 5e-26
Identities = 39/94 (41%), Positives = 60/94 (63%)
Frame = +2
Query: 326 KCNFCMEKIIFIGYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNF 505
KC F + ++ F+G+V+S G+ +D E V A+ DW KTVT+++SF L +YRRF++NF
Sbjct: 1673 KCEFWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQIRSFLGLAGYYRRFIENF 1732
Query: 506 SILAPSLMEVIKKSVGFHWGNAQEHAFNFLKNRL 607
S +A + +++KK F W E AF LK +L
Sbjct: 1733 SKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKL 1766
Score = 57.0 bits (136), Expect(2) = 5e-26
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = +3
Query: 615 LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSEM--EHTWNYPI*DKE*YALVRAS 788
L LPD K F + CDA G+G VLM +G +AY S H NYP D E A+V A
Sbjct: 1772 LILPDTRKDFMVYCDASRQGLGCVLMQDGHVVAYASRQLWPHEGNYPTHDLELAAVVHAL 1831
Query: 789 ETWQHYL 809
+ W+HYL
Sbjct: 1832 KIWRHYL 1838
>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
Length = 2241
Score = 279 bits (713), Expect(2) = 3e-96
Identities = 129/202 (63%), Positives = 164/202 (81%)
Frame = +2
Query: 2 LHGSCIFSKIDLKSGYHQIRMKEGNEWKTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 181
L GS +FSK+DL+SGYHQIRMK G+EWKT FKTK+GLYEWLVMPFGLTNAPSTFMRLMN
Sbjct: 892 LSGSIVFSKVDLRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNE 951
Query: 182 VLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSVFDVLRREKLYANLTKCNFCMEKIIFI 361
VLR +I +FVVVYFDDIL+YSKS+ EH HL++VF+ LR +L+ NL KC FC +++ F+
Sbjct: 952 VLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLKKCTFCTDRVSFL 1011
Query: 362 GYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNFSILAPSLMEVIK 541
GYVV+ GIE+D+ KV+AI+ WPT KTV++V+SF L FYRRFV++FS +A L + K
Sbjct: 1012 GYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTK 1071
Query: 542 KSVGFHWGNAQEHAFNFLKNRL 607
K V F WG +QE+AF+ LK++L
Sbjct: 1072 KGVPFTWGTSQENAFHMLKDKL 1093
Score = 100 bits (249), Expect(2) = 3e-96
Identities = 49/74 (66%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
Frame = +3
Query: 615 LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSE--MEHTWNYPI*DKE*YALVRAS 788
L LPDF KTFE+ECDA GIG+G V + G+P+AYFSE NY DKE YALVR
Sbjct: 1099 LQLPDFNKTFELECDANGIGLGGVFLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTL 1158
Query: 789 ETWQHYLWPKEFVI 830
ETWQHYLWPKEFVI
Sbjct: 1159 ETWQHYLWPKEFVI 1172
Score = 110 bits (274), Expect(2) = 7e-24
Identities = 59/175 (33%), Positives = 89/175 (50%)
Frame = +2
Query: 83 KTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHVLRAYINQFVVVYFDDILVYSKSLHEH 262
KT F YG Y + M FGL NAP++F R M + I + ++ DD VY K+
Sbjct: 2016 KTTFTCPYGTYAYRRMSFGLCNAPASFQRCMMSIFSDMIEDIMEIFMDDFSVYGKTFGHC 2075
Query: 263 IEHLQSVFDVLRREKLYANLTKCNFCMEKIIFIGYVVSGHGIEIDEEKVKAIKDWPTFKT 442
+++L V + + L N KC+F + + I +G+ VS GIE D K+ I P
Sbjct: 2076 LQNLDKVLQRCQEKDLVLNWEKCHFMVREGIVLGHRVSERGIEFDRAKIDVIDQLPPPVN 2135
Query: 443 VTEVKSFHALVSFYRRFVKNFSILAPSLMEVIKKSVGFHWGNAQEHAFNFLKNRL 607
+ ++SF FYRRF+K+FS +A L ++ K F + +A +F LK L
Sbjct: 2136 IKGIRSFLGHADFYRRFIKDFSTIARPLTNLLAKDTPFEFDDACLKSFEILKKAL 2190
Score = 27.7 bits (60), Expect(2) = 7e-24
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 624 PDFLKTFEIECDAFGIGIGAVL 689
PD+ FEI CDA +GAVL
Sbjct: 2199 PDWTLPFEIMCDASDFAVGAVL 2220
>emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]
Length = 1667
Score = 276 bits (705), Expect(2) = 8e-96
Identities = 127/202 (62%), Positives = 163/202 (80%)
Frame = +2
Query: 2 LHGSCIFSKIDLKSGYHQIRMKEGNEWKTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 181
L GS +FSK+DL+SGYHQIRM G+EWKT FKTK+GLYEWLVMPFGLTNAP+TFMRLMN
Sbjct: 721 LSGSIVFSKVDLRSGYHQIRMNLGDEWKTAFKTKFGLYEWLVMPFGLTNAPTTFMRLMNE 780
Query: 182 VLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSVFDVLRREKLYANLTKCNFCMEKIIFI 361
VLR +I +FVVVYFDDIL+YSKS+ EH HL++VF+ LR +L+ NL KC FC +++ F+
Sbjct: 781 VLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFL 840
Query: 362 GYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNFSILAPSLMEVIK 541
GYVV+ GIE+D+ KV+AI+ WPT KTV++V+SF L FYRRFV++FS +A L + K
Sbjct: 841 GYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTK 900
Query: 542 KSVGFHWGNAQEHAFNFLKNRL 607
K V F WG +QE+AF+ LK++L
Sbjct: 901 KGVPFTWGTSQENAFHMLKDKL 922
Score = 102 bits (254), Expect(2) = 8e-96
Identities = 50/74 (67%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Frame = +3
Query: 615 LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSE--MEHTWNYPI*DKE*YALVRAS 788
L LPDF KTFE+ECDA GIG+G VL+ G+P+AYFSE NY DKE YALVR
Sbjct: 928 LQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTL 987
Query: 789 ETWQHYLWPKEFVI 830
ETWQHYLWPKEFVI
Sbjct: 988 ETWQHYLWPKEFVI 1001
>emb|CAE02411.2| OSJNBa0024J22.19 [Oryza sativa Japonica Group]
Length = 1667
Score = 276 bits (705), Expect(2) = 8e-96
Identities = 127/202 (62%), Positives = 163/202 (80%)
Frame = +2
Query: 2 LHGSCIFSKIDLKSGYHQIRMKEGNEWKTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 181
L GS +FSK+DL+SGYHQIRM G+EWKT FKTK+GLYEWLVMPFGLTNAP+TFMRLMN
Sbjct: 721 LSGSIVFSKVDLRSGYHQIRMNLGDEWKTAFKTKFGLYEWLVMPFGLTNAPTTFMRLMNE 780
Query: 182 VLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSVFDVLRREKLYANLTKCNFCMEKIIFI 361
VLR +I +FVVVYFDDIL+YSKS+ EH HL++VF+ LR +L+ NL KC FC +++ F+
Sbjct: 781 VLRPFIGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFL 840
Query: 362 GYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNFSILAPSLMEVIK 541
GYVV+ GIE+D+ KV+AI+ WPT KTV++V+SF L FYRRFV++FS +A L + K
Sbjct: 841 GYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTK 900
Query: 542 KSVGFHWGNAQEHAFNFLKNRL 607
K V F WG +QE+AF+ LK++L
Sbjct: 901 KGVPFTWGTSQENAFHMLKDKL 922
Score = 102 bits (254), Expect(2) = 8e-96
Identities = 50/74 (67%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Frame = +3
Query: 615 LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSE--MEHTWNYPI*DKE*YALVRAS 788
L LPDF KTFE+ECDA GIG+G VL+ G+P+AYFSE NY DKE YALVR
Sbjct: 928 LQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTL 987
Query: 789 ETWQHYLWPKEFVI 830
ETWQHYLWPKEFVI
Sbjct: 988 ETWQHYLWPKEFVI 1001
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 274 bits (701), Expect(2) = 5e-95
Identities = 128/202 (63%), Positives = 162/202 (80%)
Frame = +2
Query: 2 LHGSCIFSKIDLKSGYHQIRMKEGNEWKTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 181
L GS +FSKIDL+SGYHQIRMK G+EWKT FKTK+GLYEWLVMPFGLTNAPSTFMRLMN
Sbjct: 826 LSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNE 885
Query: 182 VLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSVFDVLRREKLYANLTKCNFCMEKIIFI 361
VLRA+I +FVVVYFDDIL+YS+S+ +H HL++VFD LR +L+ NL KC FC +++ F+
Sbjct: 886 VLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFL 945
Query: 362 GYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNFSILAPSLMEVIK 541
GYVV+ GIE+D+ KV+AI WP T+T+V+SF L FYRRFVK+FS +A L E+ K
Sbjct: 946 GYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTK 1005
Query: 542 KSVGFHWGNAQEHAFNFLKNRL 607
++V F W AQ +AF+ LK++L
Sbjct: 1006 RNVTFTWAAAQRNAFDTLKDKL 1027
Score = 101 bits (251), Expect(2) = 5e-95
Identities = 49/74 (66%), Positives = 56/74 (75%), Gaps = 2/74 (2%)
Frame = +3
Query: 615 LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSE--MEHTWNYPI*DKE*YALVRAS 788
L LPDF KTFE+ECDA GIG+G VL+ G+P+AYFSE + NY DKE +ALVR
Sbjct: 1033 LQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTL 1092
Query: 789 ETWQHYLWPKEFVI 830
ETWQHYLWPKEFVI
Sbjct: 1093 ETWQHYLWPKEFVI 1106
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 275 bits (703), Expect(2) = 9e-95
Identities = 128/202 (63%), Positives = 163/202 (80%)
Frame = +2
Query: 2 LHGSCIFSKIDLKSGYHQIRMKEGNEWKTIFKTKYGLYEWLVMPFGLTNAPSTFMRLMNH 181
L GS +FSKIDL+SGYHQIRMK G+EWKT FKTK+GLYEWLVMPFGLTNAPSTF+RLMN
Sbjct: 826 LSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFIRLMNE 885
Query: 182 VLRAYINQFVVVYFDDILVYSKSLHEHIEHLQSVFDVLRREKLYANLTKCNFCMEKIIFI 361
VLRA+I +FVVVYFDDIL+YS+S+ +H HL++VFD LR E+L+ NL KC FC +++ F+
Sbjct: 886 VLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDERLFGNLEKCTFCTDRVSFL 945
Query: 362 GYVVSGHGIEIDEEKVKAIKDWPTFKTVTEVKSFHALVSFYRRFVKNFSILAPSLMEVIK 541
GYVV+ GIE+D+ KV+AI WP T+T+V+SF L FYRRFVK+FS +A L E+ K
Sbjct: 946 GYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTK 1005
Query: 542 KSVGFHWGNAQEHAFNFLKNRL 607
++V F W AQ +AF+ LK++L
Sbjct: 1006 RNVTFTWAAAQRNAFDTLKDKL 1027
Score = 99.8 bits (247), Expect(2) = 9e-95
Identities = 49/74 (66%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Frame = +3
Query: 615 LALPDFLKTFEIECDAFGIGIGAVLMHNGRPIAYFSE--MEHTWNYPI*DKE*YALVRAS 788
L LPDF KTFE+ECDA GIG+G VL+ G+PI YFSE + NY DKE +ALVR
Sbjct: 1033 LQLPDFNKTFELECDASGIGLGGVLLQEGKPIEYFSEKLSGPSLNYSTYDKELFALVRTL 1092
Query: 789 ETWQHYLWPKEFVI 830
ETWQHYLWPKEFVI
Sbjct: 1093 ETWQHYLWPKEFVI 1106