BLASTX nr result
ID: Cocculus23_contig00040182
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00040182
(394 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containi... 119 3e-25
ref|XP_004295870.1| PREDICTED: pentatricopeptide repeat-containi... 119 6e-25
ref|XP_002310592.2| pentatricopeptide repeat-containing family p... 117 2e-24
ref|XP_002324235.2| pentatricopeptide repeat-containing family p... 117 2e-24
ref|XP_007013366.1| Pentatricopeptide repeat-containing protein,... 115 6e-24
ref|XP_004981586.1| PREDICTED: pentatricopeptide repeat-containi... 115 8e-24
ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containi... 115 8e-24
ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [S... 115 8e-24
emb|CBI30808.3| unnamed protein product [Vitis vinifera] 115 8e-24
ref|XP_006651864.1| PREDICTED: pentatricopeptide repeat-containi... 114 1e-23
ref|XP_006382375.1| hypothetical protein POPTR_0005s01560g [Popu... 114 1e-23
ref|XP_007020191.1| Tetratricopeptide repeat (TPR)-like superfam... 114 1e-23
ref|XP_004288820.1| PREDICTED: pentatricopeptide repeat-containi... 114 1e-23
emb|CBI39605.3| unnamed protein product [Vitis vinifera] 114 1e-23
ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containi... 114 1e-23
emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera] 114 1e-23
ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group] g... 114 1e-23
gb|EYU31065.1| hypothetical protein MIMGU_mgv1a025575mg [Mimulus... 114 1e-23
ref|XP_006475804.1| PREDICTED: pentatricopeptide repeat-containi... 114 1e-23
ref|XP_006450982.1| hypothetical protein CICLE_v10010823mg [Citr... 114 1e-23
>ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 119 bits (299), Expect = 3e-25
Identities = 51/68 (75%), Positives = 62/68 (91%)
Frame = -3
Query: 392 SEKLAVAFGLISTAEGTTLTIIKNLRICGDCHSAIKLISRIVQREIIVRDRIRFHHFKDG 213
SEKLA+AFGLI+T+EGTT+ I+KNLR+C DCH AIK+IS+IV+REI+VRDR RFHHFKDG
Sbjct: 565 SEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDG 624
Query: 212 TCSCKDFW 189
CSC D+W
Sbjct: 625 KCSCNDYW 632
>ref|XP_004295870.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Fragaria vesca subsp. vesca]
Length = 729
Score = 119 bits (297), Expect = 6e-25
Identities = 53/68 (77%), Positives = 60/68 (88%)
Frame = -3
Query: 392 SEKLAVAFGLISTAEGTTLTIIKNLRICGDCHSAIKLISRIVQREIIVRDRIRFHHFKDG 213
SEKLA+AFGLIST+ GTT+ I+KNLRIC DCH A KLIS+IV+REIIVRDR RFHHFKDG
Sbjct: 662 SEKLAIAFGLISTSPGTTIRIVKNLRICNDCHDATKLISKIVEREIIVRDRSRFHHFKDG 721
Query: 212 TCSCKDFW 189
CSC D+W
Sbjct: 722 KCSCNDYW 729
>ref|XP_002310592.2| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|550334248|gb|EEE91042.2|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 785
Score = 117 bits (292), Expect = 2e-24
Identities = 51/68 (75%), Positives = 60/68 (88%)
Frame = -3
Query: 392 SEKLAVAFGLISTAEGTTLTIIKNLRICGDCHSAIKLISRIVQREIIVRDRIRFHHFKDG 213
SEKLA+AFG+IST E TTL I+KNLR+C DCH+AIK IS++V REIIVRD RFHHFKDG
Sbjct: 718 SEKLAIAFGIISTPENTTLRIMKNLRVCNDCHNAIKFISKLVDREIIVRDATRFHHFKDG 777
Query: 212 TCSCKDFW 189
+CSCKD+W
Sbjct: 778 SCSCKDYW 785
>ref|XP_002324235.2| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|550317719|gb|EEF02800.2|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 736
Score = 117 bits (292), Expect = 2e-24
Identities = 52/68 (76%), Positives = 60/68 (88%)
Frame = -3
Query: 392 SEKLAVAFGLISTAEGTTLTIIKNLRICGDCHSAIKLISRIVQREIIVRDRIRFHHFKDG 213
SEKLA+AFGLIST GTT+ I+KNLR+CG+CHSA KLIS+I REII RDR RFHHFKDG
Sbjct: 669 SEKLAIAFGLISTKPGTTIRIMKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 728
Query: 212 TCSCKDFW 189
+CSCKD+W
Sbjct: 729 SCSCKDYW 736
>ref|XP_007013366.1| Pentatricopeptide repeat-containing protein, putative [Theobroma
cacao] gi|508783729|gb|EOY30985.1| Pentatricopeptide
repeat-containing protein, putative [Theobroma cacao]
Length = 194
Score = 115 bits (288), Expect = 6e-24
Identities = 51/68 (75%), Positives = 59/68 (86%)
Frame = -3
Query: 392 SEKLAVAFGLISTAEGTTLTIIKNLRICGDCHSAIKLISRIVQREIIVRDRIRFHHFKDG 213
SEKLA+AFGLIST GTT+ I+KNLR+CG+CHSA KLIS+I +EII RDR RFHHFKDG
Sbjct: 127 SEKLAIAFGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNKEIIARDRNRFHHFKDG 186
Query: 212 TCSCKDFW 189
CSCKD+W
Sbjct: 187 FCSCKDYW 194
>ref|XP_004981586.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Setaria italica]
Length = 803
Score = 115 bits (287), Expect = 8e-24
Identities = 51/68 (75%), Positives = 59/68 (86%)
Frame = -3
Query: 392 SEKLAVAFGLISTAEGTTLTIIKNLRICGDCHSAIKLISRIVQREIIVRDRIRFHHFKDG 213
SEKLA+AFGLIST E TTL I+KNLR+C DCH AIK IS++V+REIIVRD RFHHF+DG
Sbjct: 736 SEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHMAIKFISKVVEREIIVRDATRFHHFRDG 795
Query: 212 TCSCKDFW 189
CSCKD+W
Sbjct: 796 FCSCKDYW 803
>ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
mitochondrial [Vitis vinifera]
Length = 676
Score = 115 bits (287), Expect = 8e-24
Identities = 49/68 (72%), Positives = 61/68 (89%)
Frame = -3
Query: 392 SEKLAVAFGLISTAEGTTLTIIKNLRICGDCHSAIKLISRIVQREIIVRDRIRFHHFKDG 213
SE+LA+ FGLIST EG+T+T++KNLR+CGDCHSAIKLI++IV+R+IIVRD RFHHF DG
Sbjct: 609 SERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDG 668
Query: 212 TCSCKDFW 189
CSC D+W
Sbjct: 669 RCSCGDYW 676
>ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
gi|241917662|gb|EER90806.1| hypothetical protein
SORBIDRAFT_01g006560 [Sorghum bicolor]
Length = 803
Score = 115 bits (287), Expect = 8e-24
Identities = 51/68 (75%), Positives = 59/68 (86%)
Frame = -3
Query: 392 SEKLAVAFGLISTAEGTTLTIIKNLRICGDCHSAIKLISRIVQREIIVRDRIRFHHFKDG 213
SEKLA+AFGLIST E TTL I+KNLR+C DCH+AIK IS++V REIIVRD RFHHF+DG
Sbjct: 736 SEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKVVDREIIVRDATRFHHFRDG 795
Query: 212 TCSCKDFW 189
CSCKD+W
Sbjct: 796 YCSCKDYW 803
>emb|CBI30808.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 115 bits (287), Expect = 8e-24
Identities = 49/68 (72%), Positives = 61/68 (89%)
Frame = -3
Query: 392 SEKLAVAFGLISTAEGTTLTIIKNLRICGDCHSAIKLISRIVQREIIVRDRIRFHHFKDG 213
SE+LA+ FGLIST EG+T+T++KNLR+CGDCHSAIKLI++IV+R+IIVRD RFHHF DG
Sbjct: 593 SERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDG 652
Query: 212 TCSCKDFW 189
CSC D+W
Sbjct: 653 RCSCGDYW 660
>ref|XP_006651864.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like, partial [Oryza brachyantha]
Length = 761
Score = 114 bits (286), Expect = 1e-23
Identities = 50/68 (73%), Positives = 58/68 (85%)
Frame = -3
Query: 392 SEKLAVAFGLISTAEGTTLTIIKNLRICGDCHSAIKLISRIVQREIIVRDRIRFHHFKDG 213
SEKLA+AFGLIST E TTL I+KNLR+C DCH+AIK +SR+ REIIVRD RFHHF+DG
Sbjct: 694 SEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFVSRVTDREIIVRDATRFHHFRDG 753
Query: 212 TCSCKDFW 189
CSCKD+W
Sbjct: 754 LCSCKDYW 761
>ref|XP_006382375.1| hypothetical protein POPTR_0005s01560g [Populus trichocarpa]
gi|550337735|gb|ERP60172.1| hypothetical protein
POPTR_0005s01560g [Populus trichocarpa]
Length = 545
Score = 114 bits (286), Expect = 1e-23
Identities = 50/68 (73%), Positives = 59/68 (86%)
Frame = -3
Query: 392 SEKLAVAFGLISTAEGTTLTIIKNLRICGDCHSAIKLISRIVQREIIVRDRIRFHHFKDG 213
SEKLA+AFGLI+T GTT+ ++KNLR+C DCHSA KLIS++ REIIVRDR R+HHFK G
Sbjct: 478 SEKLAIAFGLINTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTG 537
Query: 212 TCSCKDFW 189
TCSCKDFW
Sbjct: 538 TCSCKDFW 545
>ref|XP_007020191.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma
cacao] gi|508725519|gb|EOY17416.1| Tetratricopeptide
repeat (TPR)-like superfamily protein [Theobroma cacao]
Length = 574
Score = 114 bits (286), Expect = 1e-23
Identities = 51/68 (75%), Positives = 60/68 (88%)
Frame = -3
Query: 392 SEKLAVAFGLISTAEGTTLTIIKNLRICGDCHSAIKLISRIVQREIIVRDRIRFHHFKDG 213
SEKLAVAFGLIST EGT + +IKNLRICGDCH IK IS+I +REIIVRDR+RFH F+DG
Sbjct: 507 SEKLAVAFGLISTNEGTPIQVIKNLRICGDCHVVIKHISKIYEREIIVRDRVRFHRFRDG 566
Query: 212 TCSCKDFW 189
+CSC+D+W
Sbjct: 567 SCSCRDYW 574
>ref|XP_004288820.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Fragaria vesca subsp. vesca]
Length = 659
Score = 114 bits (286), Expect = 1e-23
Identities = 50/68 (73%), Positives = 59/68 (86%)
Frame = -3
Query: 392 SEKLAVAFGLISTAEGTTLTIIKNLRICGDCHSAIKLISRIVQREIIVRDRIRFHHFKDG 213
SEKLA+AFGLIST GTT+ ++KNLR+C DCH+A KLIS++ REIIVRDR RFH FKDG
Sbjct: 592 SEKLAIAFGLISTNPGTTIRVVKNLRVCSDCHTATKLISKVYNREIIVRDRNRFHQFKDG 651
Query: 212 TCSCKDFW 189
+CSCKDFW
Sbjct: 652 SCSCKDFW 659
>emb|CBI39605.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 114 bits (286), Expect = 1e-23
Identities = 49/68 (72%), Positives = 60/68 (88%)
Frame = -3
Query: 392 SEKLAVAFGLISTAEGTTLTIIKNLRICGDCHSAIKLISRIVQREIIVRDRIRFHHFKDG 213
SEKLA+ FGLI+T+ GTT+ I+KNLR+C DCHSA KLIS++ REIIVRDRIR+HHF++G
Sbjct: 557 SEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNG 616
Query: 212 TCSCKDFW 189
CSCKDFW
Sbjct: 617 ACSCKDFW 624
>ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 114 bits (286), Expect = 1e-23
Identities = 49/68 (72%), Positives = 60/68 (88%)
Frame = -3
Query: 392 SEKLAVAFGLISTAEGTTLTIIKNLRICGDCHSAIKLISRIVQREIIVRDRIRFHHFKDG 213
SEKLA+ FGLI+T+ GTT+ I+KNLR+C DCHSA KLIS++ REIIVRDRIR+HHF++G
Sbjct: 605 SEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNG 664
Query: 212 TCSCKDFW 189
CSCKDFW
Sbjct: 665 ACSCKDFW 672
>emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 114 bits (286), Expect = 1e-23
Identities = 49/68 (72%), Positives = 60/68 (88%)
Frame = -3
Query: 392 SEKLAVAFGLISTAEGTTLTIIKNLRICGDCHSAIKLISRIVQREIIVRDRIRFHHFKDG 213
SEKLA+ FGLI+T+ GTT+ I+KNLR+C DCHSA KLIS++ REIIVRDRIR+HHF++G
Sbjct: 606 SEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNG 665
Query: 212 TCSCKDFW 189
CSCKDFW
Sbjct: 666 ACSCKDFW 673
>ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|108707037|gb|ABF94832.1| pentatricopeptide, putative,
expressed [Oryza sativa Japonica Group]
gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa
Japonica Group] gi|125585525|gb|EAZ26189.1| hypothetical
protein OsJ_10058 [Oryza sativa Japonica Group]
gi|215706461|dbj|BAG93317.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 641
Score = 114 bits (286), Expect = 1e-23
Identities = 50/68 (73%), Positives = 61/68 (89%)
Frame = -3
Query: 392 SEKLAVAFGLISTAEGTTLTIIKNLRICGDCHSAIKLISRIVQREIIVRDRIRFHHFKDG 213
SE+LAVAFG+I+T EG+ + + KNLRICGDCH+AIKLIS+IVQR+IIVRD RFHHFKDG
Sbjct: 574 SERLAVAFGIIATPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHFKDG 633
Query: 212 TCSCKDFW 189
CSC+D+W
Sbjct: 634 ICSCRDYW 641
>gb|EYU31065.1| hypothetical protein MIMGU_mgv1a025575mg [Mimulus guttatus]
Length = 783
Score = 114 bits (285), Expect = 1e-23
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = -3
Query: 392 SEKLAVAFGLISTAEGTTLTIIKNLRICGDCHSAIKLISRIVQREIIVRDRIRFHHFKDG 213
SEKLA+AFGL+ST +GTTL I+KNLR+C DCHSAIK IS++V REIIVRD RFHHFK+G
Sbjct: 716 SEKLAIAFGLMSTPDGTTLRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKNG 775
Query: 212 TCSCKDFW 189
CSC+D+W
Sbjct: 776 LCSCRDYW 783
>ref|XP_006475804.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Citrus sinensis]
Length = 736
Score = 114 bits (285), Expect = 1e-23
Identities = 50/68 (73%), Positives = 58/68 (85%)
Frame = -3
Query: 392 SEKLAVAFGLISTAEGTTLTIIKNLRICGDCHSAIKLISRIVQREIIVRDRIRFHHFKDG 213
SEKLA+A+GLIST GTT+ I+KNLR+CG+CHSA KLIS+I REII RDR RFHHFKDG
Sbjct: 669 SEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 728
Query: 212 TCSCKDFW 189
CSC D+W
Sbjct: 729 NCSCNDYW 736
>ref|XP_006450982.1| hypothetical protein CICLE_v10010823mg [Citrus clementina]
gi|557554208|gb|ESR64222.1| hypothetical protein
CICLE_v10010823mg [Citrus clementina]
Length = 736
Score = 114 bits (285), Expect = 1e-23
Identities = 50/68 (73%), Positives = 58/68 (85%)
Frame = -3
Query: 392 SEKLAVAFGLISTAEGTTLTIIKNLRICGDCHSAIKLISRIVQREIIVRDRIRFHHFKDG 213
SEKLA+A+GLIST GTT+ I+KNLR+CG+CHSA KLIS+I REII RDR RFHHFKDG
Sbjct: 669 SEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 728
Query: 212 TCSCKDFW 189
CSC D+W
Sbjct: 729 NCSCNDYW 736