BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00040164
         (294 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AHC13200.1| polyprotein [Citrus endogenous pararetrovirus]         125   8e-27
gb|AHC13197.1| polyprotein [Citrus endogenous pararetrovirus]         125   8e-27
ref|YP_008992013.1| polyprotein [Citrus endogenous pararetroviru...   125   8e-27
ref|XP_004497811.1| PREDICTED: genome polyprotein-like [Cicer ar...   122   5e-26
ref|XP_004491299.1| PREDICTED: genome polyprotein-like [Cicer ar...   122   5e-26
ref|XP_004490917.1| PREDICTED: genome polyprotein-like [Cicer ar...   122   7e-26
ref|XP_004511185.1| PREDICTED: genome polyprotein-like [Cicer ar...   118   8e-25
gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus]            116   3e-24
sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contain...   116   3e-24
ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]...   116   3e-24
ref|XP_004500104.1| PREDICTED: genome polyprotein-like [Cicer ar...   114   1e-23
ref|XP_004499727.1| PREDICTED: genome polyprotein-like [Cicer ar...   114   1e-23
ref|XP_004488974.1| PREDICTED: genome polyprotein-like [Cicer ar...   114   1e-23
ref|XP_006403349.1| hypothetical protein EUTSA_v10003417mg, part...   113   3e-23
gb|AHN13810.1| reverse transcriptase [Aristotelia chilensis vein...   112   5e-23
ref|XP_006405665.1| hypothetical protein EUTSA_v10028343mg, part...   112   5e-23
ref|XP_004489152.1| PREDICTED: genome polyprotein-like [Cicer ar...   110   3e-22
ref|XP_006393720.1| hypothetical protein EUTSA_v10012231mg, part...   106   3e-21
ref|XP_006409622.1| hypothetical protein EUTSA_v10023188mg, part...   103   3e-20
ref|XP_004499473.1| PREDICTED: genome polyprotein-like [Cicer ar...   101   1e-19

>gb|AHC13200.1| polyprotein [Citrus endogenous pararetrovirus]
          Length = 1701

 Score =  125 bits (313), Expect = 8e-27
 Identities = 54/97 (55%), Positives = 79/97 (81%)
 Frame = -2

Query: 293  NDRHKTTFCIHNAHYQWTIMPFGLKTAPSLFQQAITKIYAPMLSSMLIYIDDLLIFAKTK 114
            ++R+KT FCI NAH+QWT++PFGLKTAPS+FQ+++ KI+ P+LS+ LIYIDD+L+F+ + 
Sbjct: 1335 SERYKTAFCIPNAHFQWTVLPFGLKTAPSIFQKSMIKIFQPLLSNALIYIDDILLFSGSH 1394

Query: 113  VEMQALLTQFFDLTDSYGVMISAKKSVMFQQTIDFLG 3
             +   LL QF+D+  S+G+M+SAKKS +   TI+FLG
Sbjct: 1395 DDHHRLLNQFYDIVHSHGIMLSAKKSTIATDTIEFLG 1431


>gb|AHC13197.1| polyprotein [Citrus endogenous pararetrovirus]
          Length = 1799

 Score =  125 bits (313), Expect = 8e-27
 Identities = 54/97 (55%), Positives = 79/97 (81%)
 Frame = -2

Query: 293  NDRHKTTFCIHNAHYQWTIMPFGLKTAPSLFQQAITKIYAPMLSSMLIYIDDLLIFAKTK 114
            ++R+KT FCI NAH+QWT++PFGLKTAPS+FQ+++ KI+ P+LS+ LIYIDD+L+F+ + 
Sbjct: 1433 SERYKTAFCIPNAHFQWTVLPFGLKTAPSIFQKSMIKIFQPLLSNALIYIDDILLFSGSH 1492

Query: 113  VEMQALLTQFFDLTDSYGVMISAKKSVMFQQTIDFLG 3
             +   LL QF+D+  S+G+M+SAKKS +   TI+FLG
Sbjct: 1493 DDHHRLLNQFYDIVHSHGIMLSAKKSTIATDTIEFLG 1529


>ref|YP_008992013.1| polyprotein [Citrus endogenous pararetrovirus]
            gi|565672276|gb|AHC13194.1| polyprotein [Citrus
            endogenous pararetrovirus]
          Length = 1812

 Score =  125 bits (313), Expect = 8e-27
 Identities = 54/97 (55%), Positives = 79/97 (81%)
 Frame = -2

Query: 293  NDRHKTTFCIHNAHYQWTIMPFGLKTAPSLFQQAITKIYAPMLSSMLIYIDDLLIFAKTK 114
            ++R+KT FCI NAH+QWT++PFGLKTAPS+FQ+++ KI+ P+LS+ LIYIDD+L+F+ + 
Sbjct: 1446 SERYKTAFCIPNAHFQWTVLPFGLKTAPSIFQKSMIKIFQPLLSNALIYIDDILLFSGSH 1505

Query: 113  VEMQALLTQFFDLTDSYGVMISAKKSVMFQQTIDFLG 3
             +   LL QF+D+  S+G+M+SAKKS +   TI+FLG
Sbjct: 1506 DDHHRLLNQFYDIVHSHGIMLSAKKSTIATDTIEFLG 1542


>ref|XP_004497811.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
          Length = 1951

 Score =  122 bits (306), Expect = 5e-26
 Identities = 55/97 (56%), Positives = 76/97 (78%)
 Frame = -2

Query: 293  NDRHKTTFCIHNAHYQWTIMPFGLKTAPSLFQQAITKIYAPMLSSMLIYIDDLLIFAKTK 114
            NDR+KT FCI NA YQWT++PFGLK APSLFQ+A+T+I+ P++ S+LIYIDD+L+F+K +
Sbjct: 1447 NDRYKTAFCIPNAQYQWTVLPFGLKVAPSLFQKAMTRIFEPIIDSILIYIDDVLLFSKDE 1506

Query: 113  VEMQALLTQFFDLTDSYGVMISAKKSVMFQQTIDFLG 3
               + LL QF  +  ++G+M+S KKS + Q  IDFLG
Sbjct: 1507 KAHKQLLGQFVQIAQNHGIMLSEKKSQIAQTEIDFLG 1543


>ref|XP_004491299.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
          Length = 894

 Score =  122 bits (306), Expect = 5e-26
 Identities = 55/97 (56%), Positives = 76/97 (78%)
 Frame = -2

Query: 293 NDRHKTTFCIHNAHYQWTIMPFGLKTAPSLFQQAITKIYAPMLSSMLIYIDDLLIFAKTK 114
           NDR+KT FCI NA YQWT++PFGLK APSLFQ+A+T+I+ P++ S+LIYIDD+L+F+K +
Sbjct: 657 NDRYKTAFCIPNAQYQWTVLPFGLKVAPSLFQKAMTRIFEPIIDSILIYIDDVLLFSKDE 716

Query: 113 VEMQALLTQFFDLTDSYGVMISAKKSVMFQQTIDFLG 3
              + LL QF  +  ++G+M+S KKS + Q  IDFLG
Sbjct: 717 KAHKQLLGQFVQIAQNHGIMLSEKKSQIAQTEIDFLG 753


>ref|XP_004490917.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
          Length = 279

 Score =  122 bits (305), Expect = 7e-26
 Identities = 55/97 (56%), Positives = 75/97 (77%)
 Frame = -2

Query: 293 NDRHKTTFCIHNAHYQWTIMPFGLKTAPSLFQQAITKIYAPMLSSMLIYIDDLLIFAKTK 114
           NDR+KT FCI NA YQWT++PFGLK APSLFQ+A+T+I+ P++ S+LIYIDD+L+F+K +
Sbjct: 13  NDRYKTAFCIPNAQYQWTVLPFGLKVAPSLFQKAMTRIFEPIIDSILIYIDDVLLFSKDE 72

Query: 113 VEMQALLTQFFDLTDSYGVMISAKKSVMFQQTIDFLG 3
              + LL QF  +   +G+M+S KKS + Q  IDFLG
Sbjct: 73  KAHKQLLGQFTQIAQGHGIMLSEKKSQIAQTNIDFLG 109


>ref|XP_004511185.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
          Length = 803

 Score =  118 bits (296), Expect = 8e-25
 Identities = 54/97 (55%), Positives = 74/97 (76%)
 Frame = -2

Query: 293 NDRHKTTFCIHNAHYQWTIMPFGLKTAPSLFQQAITKIYAPMLSSMLIYIDDLLIFAKTK 114
           NDR+KT FCI NA YQWT++ FGLK APSLFQ+A+T+I+ P++ S+LIYIDD+L+F+K +
Sbjct: 523 NDRYKTAFCIPNAQYQWTVLSFGLKVAPSLFQKAMTRIFEPIIDSILIYIDDVLLFSKDE 582

Query: 113 VEMQALLTQFFDLTDSYGVMISAKKSVMFQQTIDFLG 3
              + LL QF  +   +G+M+S KKS + Q  IDFLG
Sbjct: 583 KAHKQLLGQFSQIAQEHGIMLSEKKSQIAQTEIDFLG 619


>gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus]
          Length = 1886

 Score =  116 bits (291), Expect = 3e-24
 Identities = 54/97 (55%), Positives = 72/97 (74%)
 Frame = -2

Query: 293  NDRHKTTFCIHNAHYQWTIMPFGLKTAPSLFQQAITKIYAPMLSSMLIYIDDLLIFAKTK 114
            N+R KT FCI + H+QW +MPFGLKTAPSLFQ+A+ KI+ P+L S L+YIDD+L+F++T 
Sbjct: 1493 NERPKTGFCIPDRHFQWKVMPFGLKTAPSLFQKAMIKIFQPILFSALVYIDDILLFSETL 1552

Query: 113  VEMQALLTQFFDLTDSYGVMISAKKSVMFQQTIDFLG 3
             +   LL QF  L   +GVM+SAKK ++ Q  I FLG
Sbjct: 1553 EDHIKLLNQFISLVKKFGVMLSAKKMILAQNKIQFLG 1589


>sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement
            protein; Short=MP; Contains: RecName: Full=Capsid
            protein; Short=CP; Contains: RecName: Full=Aspartic
            protease; Short=PR; Contains: RecName: Full=Reverse
            transcriptase; Short=RT gi|34328896|gb|AAO67368.1|
            polyprotein 1 [Petunia vein clearing virus]
          Length = 2180

 Score =  116 bits (291), Expect = 3e-24
 Identities = 54/97 (55%), Positives = 72/97 (74%)
 Frame = -2

Query: 293  NDRHKTTFCIHNAHYQWTIMPFGLKTAPSLFQQAITKIYAPMLSSMLIYIDDLLIFAKTK 114
            N+R KT FCI + H+QW +MPFGLKTAPSLFQ+A+ KI+ P+L S L+YIDD+L+F++T 
Sbjct: 1493 NERPKTGFCIPDRHFQWKVMPFGLKTAPSLFQKAMIKIFQPILFSALVYIDDILLFSETL 1552

Query: 113  VEMQALLTQFFDLTDSYGVMISAKKSVMFQQTIDFLG 3
             +   LL QF  L   +GVM+SAKK ++ Q  I FLG
Sbjct: 1553 EDHIKLLNQFISLVKKFGVMLSAKKMILAQNKIQFLG 1589


>ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]
            gi|82061579|sp|Q91DM0.1|POLG_PVCV1 RecName: Full=Genome
            polyprotein; Contains: RecName: Full=Movement protein;
            Short=MP; Contains: RecName: Full=Capsid protein;
            Short=CP; Contains: RecName: Full=Aspartic protease;
            Short=PR; Contains: RecName: Full=Reverse transcriptase;
            Short=RT gi|14574598|gb|AAK68664.1| ORF I polyprotein
            [petunia vein clearing virus]
          Length = 2179

 Score =  116 bits (291), Expect = 3e-24
 Identities = 54/97 (55%), Positives = 72/97 (74%)
 Frame = -2

Query: 293  NDRHKTTFCIHNAHYQWTIMPFGLKTAPSLFQQAITKIYAPMLSSMLIYIDDLLIFAKTK 114
            N+R KT FCI + H+QW +MPFGLKTAPSLFQ+A+ KI+ P+L S L+YIDD+L+F++T 
Sbjct: 1492 NERPKTGFCIPDRHFQWKVMPFGLKTAPSLFQKAMIKIFQPILFSALVYIDDILLFSETL 1551

Query: 113  VEMQALLTQFFDLTDSYGVMISAKKSVMFQQTIDFLG 3
             +   LL QF  L   +GVM+SAKK ++ Q  I FLG
Sbjct: 1552 EDHIKLLNQFISLVKKFGVMLSAKKMILAQNKIQFLG 1588


>ref|XP_004500104.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
          Length = 1170

 Score =  114 bits (286), Expect = 1e-23
 Identities = 51/84 (60%), Positives = 67/84 (79%)
 Frame = -2

Query: 290  DRHKTTFCIHNAHYQWTIMPFGLKTAPSLFQQAITKIYAPMLSSMLIYIDDLLIFAKTKV 111
            DRHKT FCI NA YQWT++PFGLK APSLFQ+A+TKI+ P+L S+LIYIDD+L+F+K + 
Sbjct: 853  DRHKTAFCIPNAQYQWTVLPFGLKVAPSLFQKAMTKIFEPILDSILIYIDDVLLFSKDEK 912

Query: 110  EMQALLTQFFDLTDSYGVMISAKK 39
              + LL QFF +   +G+M+S KK
Sbjct: 913  THKQLLGQFFQIAHDHGIMLSEKK 936


>ref|XP_004499727.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
          Length = 1645

 Score =  114 bits (286), Expect = 1e-23
 Identities = 52/96 (54%), Positives = 72/96 (75%)
 Frame = -2

Query: 290  DRHKTTFCIHNAHYQWTIMPFGLKTAPSLFQQAITKIYAPMLSSMLIYIDDLLIFAKTKV 111
            DR+K  FCI NA YQW ++PFGLK APSLFQ+A+T+I+ P++ S+LIYIDD+L+F+K + 
Sbjct: 1393 DRYKMAFCIPNAQYQWIVLPFGLKVAPSLFQKAMTRIFEPIIDSILIYIDDVLLFSKDEK 1452

Query: 110  EMQALLTQFFDLTDSYGVMISAKKSVMFQQTIDFLG 3
              + LL QF  +   +G+M+S KKS + Q  IDFLG
Sbjct: 1453 AHKQLLGQFSQIAQDHGIMLSEKKSQITQTEIDFLG 1488


>ref|XP_004488974.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
          Length = 260

 Score =  114 bits (286), Expect = 1e-23
 Identities = 52/94 (55%), Positives = 72/94 (76%)
 Frame = -2

Query: 284 HKTTFCIHNAHYQWTIMPFGLKTAPSLFQQAITKIYAPMLSSMLIYIDDLLIFAKTKVEM 105
           +KT FCI NA YQWT++PFGLK APSLFQ+A+T+I+ P++ S+LIYIDD+L+F+K +   
Sbjct: 86  YKTVFCIPNAQYQWTVLPFGLKVAPSLFQKAMTRIFEPIIDSILIYIDDVLLFSKYEKAH 145

Query: 104 QALLTQFFDLTDSYGVMISAKKSVMFQQTIDFLG 3
           + LL QF  +   +G+M+S KKS + Q  IDFLG
Sbjct: 146 KQLLGQFSQIAQDHGIMLSEKKSQIAQTEIDFLG 179


>ref|XP_006403349.1| hypothetical protein EUTSA_v10003417mg, partial [Eutrema salsugineum]
            gi|557104462|gb|ESQ44802.1| hypothetical protein
            EUTSA_v10003417mg, partial [Eutrema salsugineum]
          Length = 988

 Score =  113 bits (282), Expect = 3e-23
 Identities = 49/97 (50%), Positives = 73/97 (75%)
 Frame = -2

Query: 293  NDRHKTTFCIHNAHYQWTIMPFGLKTAPSLFQQAITKIYAPMLSSMLIYIDDLLIFAKTK 114
            ++R+KT FC+ N H QW ++PFGLKTAPSLFQQA+ +I+ P+L + LIYIDD+L+F+ ++
Sbjct: 773  DERYKTAFCLPNRHLQWNVLPFGLKTAPSLFQQAMLRIFKPLLHTALIYIDDILLFSTSE 832

Query: 113  VEMQALLTQFFDLTDSYGVMISAKKSVMFQQTIDFLG 3
             +    L QF  + + YG+M+SA+K ++ Q  IDFLG
Sbjct: 833  EDHIRSLRQFQGIVEEYGIMLSARKMIVAQPNIDFLG 869


>gb|AHN13810.1| reverse transcriptase [Aristotelia chilensis vein clearing virus]
          Length = 758

 Score =  112 bits (280), Expect = 5e-23
 Identities = 51/97 (52%), Positives = 74/97 (76%)
 Frame = -2

Query: 293 NDRHKTTFCIHNAHYQWTIMPFGLKTAPSLFQQAITKIYAPMLSSMLIYIDDLLIFAKTK 114
           ++R KT FCI + HYQW +MPFGLKTAPSLFQ+A+ KI++P+L++ LIYIDD+L+F+ ++
Sbjct: 100 DERPKTGFCITDHHYQWKVMPFGLKTAPSLFQKAMIKIFSPILTNALIYIDDILLFSHSQ 159

Query: 113 VEMQALLTQFFDLTDSYGVMISAKKSVMFQQTIDFLG 3
                +L QF  L   YG+M+S KK ++  +T+DFLG
Sbjct: 160 EAHIQILYQFHQLCLQYGIMLSEKKMIIGTETVDFLG 196


>ref|XP_006405665.1| hypothetical protein EUTSA_v10028343mg, partial [Eutrema salsugineum]
            gi|557106803|gb|ESQ47118.1| hypothetical protein
            EUTSA_v10028343mg, partial [Eutrema salsugineum]
          Length = 1104

 Score =  112 bits (280), Expect = 5e-23
 Identities = 49/97 (50%), Positives = 73/97 (75%)
 Frame = -2

Query: 293  NDRHKTTFCIHNAHYQWTIMPFGLKTAPSLFQQAITKIYAPMLSSMLIYIDDLLIFAKTK 114
            ++R+KT FC+ N H QW ++PFGLKTAPSLFQQA+ +I+ P+L + LIYIDD+L+F+ ++
Sbjct: 907  DERYKTAFCLPNRHLQWNVLPFGLKTAPSLFQQAMLRIFKPLLHTALIYIDDILLFSTSE 966

Query: 113  VEMQALLTQFFDLTDSYGVMISAKKSVMFQQTIDFLG 3
             +    L QF  + + YG+M+SA+K ++ Q  IDFLG
Sbjct: 967  EDHIRSLRQFQGIVEEYGIMLSARKMMIAQPNIDFLG 1003


>ref|XP_004489152.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
          Length = 143

 Score =  110 bits (274), Expect = 3e-22
 Identities = 48/85 (56%), Positives = 67/85 (78%)
 Frame = -2

Query: 290 DRHKTTFCIHNAHYQWTIMPFGLKTAPSLFQQAITKIYAPMLSSMLIYIDDLLIFAKTKV 111
           DR+KT FCI NA YQWT++PFGLK APSLFQ+A+T+I+ P++ S+LIYIDD+L+F+K + 
Sbjct: 59  DRYKTAFCIPNAQYQWTVLPFGLKVAPSLFQKAMTRIFEPIIDSILIYIDDVLLFSKDEK 118

Query: 110 EMQALLTQFFDLTDSYGVMISAKKS 36
             + LL Q F +   +G+M+S KKS
Sbjct: 119 AHKQLLGQIFQIAQDHGIMLSEKKS 143


>ref|XP_006393720.1| hypothetical protein EUTSA_v10012231mg, partial [Eutrema salsugineum]
            gi|557090298|gb|ESQ31006.1| hypothetical protein
            EUTSA_v10012231mg, partial [Eutrema salsugineum]
          Length = 1904

 Score =  106 bits (265), Expect = 3e-21
 Identities = 48/96 (50%), Positives = 68/96 (70%)
 Frame = -2

Query: 290  DRHKTTFCIHNAHYQWTIMPFGLKTAPSLFQQAITKIYAPMLSSMLIYIDDLLIFAKTKV 111
            DR KT+FCI + H+QW +MPFGLK APSLFQ+A+TKI+ P+L + L+YIDD+L+F+    
Sbjct: 1340 DRPKTSFCIPDHHFQWKVMPFGLKVAPSLFQKAMTKIFEPILPNALVYIDDILLFSPDID 1399

Query: 110  EMQALLTQFFDLTDSYGVMISAKKSVMFQQTIDFLG 3
                LL +F  +   YG+M+S KK  + +  IDF+G
Sbjct: 1400 SHTRLLEKFHKIVQQYGIMLSEKKMAIGETEIDFIG 1435


>ref|XP_006409622.1| hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
            gi|557110784|gb|ESQ51075.1| hypothetical protein
            EUTSA_v10023188mg, partial [Eutrema salsugineum]
          Length = 1101

 Score =  103 bits (256), Expect = 3e-20
 Identities = 48/96 (50%), Positives = 66/96 (68%)
 Frame = -2

Query: 290  DRHKTTFCIHNAHYQWTIMPFGLKTAPSLFQQAITKIYAPMLSSMLIYIDDLLIFAKTKV 111
            DR KT FCI + H+QW +MPFGLK APSLFQ+A+TKI+ P+L + L+ IDD+L+F+    
Sbjct: 937  DRPKTGFCIPDHHFQWKVMPFGLKVAPSLFQKAMTKIFEPILPNALVNIDDILLFSSDID 996

Query: 110  EMQALLTQFFDLTDSYGVMISAKKSVMFQQTIDFLG 3
                LL +F  +   YG+M+S KK  + +  IDFLG
Sbjct: 997  SHTRLLEKFHKIVQQYGIMLSEKKMAIGETEIDFLG 1032


>ref|XP_004499473.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
          Length = 441

 Score =  101 bits (252), Expect = 1e-19
 Identities = 51/97 (52%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
 Frame = -2

Query: 290 DRHKTTFCIHNAHYQWTIMPFGLKTAPSLFQQAITKIYAPMLSSMLIYI-DDLLIFAKTK 114
           DR K   CI NA YQWTI+ FGLK APSLFQ+ +T+I+  +L+S+LIYI DD+ +F+K +
Sbjct: 194 DRCKMALCIPNAQYQWTILSFGLKVAPSLFQKTMTRIFESILNSILIYIDDDVFLFSKDE 253

Query: 113 VEMQALLTQFFDLTDSYGVMISAKKSVMFQQTIDFLG 3
              + LL QF  +  +YG+M+S KKS + Q  IDFLG
Sbjct: 254 KAHKQLLGQFSHVAQNYGMMLSKKKSQLAQTEIDFLG 290