BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00039291
         (295 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN71688.1| hypothetical protein VITISV_015290 [Vitis vinifera]    76   4e-12
emb|CAN66775.1| hypothetical protein VITISV_035302 [Vitis vinifera]    75   1e-11
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]    71   1e-10
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...    70   2e-10
emb|CAN69096.1| hypothetical protein VITISV_025437 [Vitis vinifera]    66   4e-09
emb|CAN62092.1| hypothetical protein VITISV_022473 [Vitis vinifera]    44   1e-08
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...    65   1e-08
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]         65   1e-08
emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]    64   3e-08
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...    63   4e-08
gb|ABA93547.1| retrotransposon protein, putative, Ty1-copia subc...    62   8e-08
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]      62   8e-08
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...    62   8e-08
emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera]    62   8e-08
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc...    62   8e-08
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...    62   8e-08
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]      62   1e-07
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]          61   1e-07
emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]          61   2e-07
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc...    60   3e-07

>emb|CAN71688.1| hypothetical protein VITISV_015290 [Vitis vinifera]
          Length = 259

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 36/82 (43%), Positives = 48/82 (58%)
 Frame = -3

Query: 251 MKKNASEQLSDSGAQHSSQTSNSPIDHPYSIAKDRPRRERKSPDRYGYADFVAYALSVAD 72
           ++K  S +  +   QH     N+P +  Y +A+DR  R+ K P RY Y D VAYA SVA 
Sbjct: 126 VRKTISIKPKEKEVQHFDDNENTPQEQQYCLARDRIMRQIKPPQRYSYVDSVAYAFSVAK 185

Query: 71  EIQGEEPGTYQEAITSEDSAQW 6
            I+ EEP TY E IT+ +S QW
Sbjct: 186 NIEKEEPQTYHETITNRESTQW 207


>emb|CAN66775.1| hypothetical protein VITISV_035302 [Vitis vinifera]
          Length = 734

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 39/96 (40%), Positives = 56/96 (58%)
 Frame = -3

Query: 293 VREQVEFEAEDKRNMKKNASEQLSDSGAQHSSQTSNSPIDHPYSIAKDRPRRERKSPDRY 114
           +RE+VEF  +     +K  S +  +   Q      ++P +  Y + +DR RR+ K   RY
Sbjct: 331 MREKVEFVTKAXETXEKAISIKPKEEEVQLLBDKESAPQEQQYCLVRDRIRRQIKPSQRY 390

Query: 113 GYADFVAYALSVADEIQGEEPGTYQEAITSEDSAQW 6
            YAD VAYALSVA+ I+ EEP TY EAIT  + A++
Sbjct: 391 AYADLVAYALSVAESIENEEPQTYHEAITGVEDARF 426


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
 Frame = -3

Query: 287 EQVEFEAEDKRNMKKNASEQLSDSGAQ----HSSQTSNSPIDHPYSIAKDRPRRERKSPD 120
           +Q++FE E +  ++   S++ S   AQ    H  Q   +     Y++ +DR +R+ K P 
Sbjct: 690 DQLQFEVEHE-TLQPEKSKETSSKTAQEEIVHERQNEPTQGLESYNLVRDRQKRQVKPPK 748

Query: 119 RYGYADFVAYALSVADEIQGEEPGTYQEAITSEDSAQW 6
           RYG A+  A+ALSVA+EI   EP TYQEAI S ++ QW
Sbjct: 749 RYGQAEMTAFALSVAEEIVDMEPKTYQEAINSNEADQW 786


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
 Frame = -3

Query: 287 EQVEFEAEDKRNMKKNASEQLSDSGAQHSSQTSNS-PIDHPYSIAKDRPRRER-KSPDRY 114
           +QVEF+     +  K   E+  D   Q  +    S P D   SIA+DRPRR   + P RY
Sbjct: 713 KQVEFQVIQNESDLKEPEEE--DQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRY 770

Query: 113 GYADFVAYALSVADEIQGEEPGTYQEAITSEDSAQW 6
           G+ D V YAL VA+E+   EP TY+EAI S DS +W
Sbjct: 771 GFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKW 806


>emb|CAN69096.1| hypothetical protein VITISV_025437 [Vitis vinifera]
          Length = 992

 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
 Frame = -3

Query: 287  EQVEFEAEDKRNMKKNASEQLSDSGAQ---HSSQTSNSPIDHPYSIAKDRPRRERKSPDR 117
            +Q++F+ E +    K ++E  S +  +   +  Q   +     YS+A+DR +R+ K P R
Sbjct: 858  DQLQFDVEHETLQPKKSTETSSKTVQEKIVYERQDEPTQGLESYSLARDRQKRQVKPPKR 917

Query: 116  YGYADFVAYALSVADEIQGEEPGTYQEAITSEDSAQW 6
            YG A+   +ALSVA+EI   EP T QEAI S+++ QW
Sbjct: 918  YGQAEMTTFALSVAEEIVDMEPKTNQEAINSDEANQW 954


>emb|CAN62092.1| hypothetical protein VITISV_022473 [Vitis vinifera]
          Length = 318

 Score = 43.9 bits (102), Expect(2) = 1e-08
 Identities = 21/66 (31%), Positives = 35/66 (53%)
 Frame = -3

Query: 293 VREQVEFEAEDKRNMKKNASEQLSDSGAQHSSQTSNSPIDHPYSIAKDRPRRERKSPDRY 114
           +RE VEF  +    ++K  S + ++   Q      ++P +  Y + +DR RR+ K P RY
Sbjct: 220 MRENVEFVTKASETIEKAISIKPNEEEVQLLDDKESAPQEQQYCLVRDRIRRQIKQPQRY 279

Query: 113 GYADFV 96
            YAD +
Sbjct: 280 AYADLL 285



 Score = 40.8 bits (94), Expect(2) = 1e-08
 Identities = 20/33 (60%), Positives = 24/33 (72%)
 Frame = -1

Query: 100 LLLMHLVWQMRFREKNLVHIRRLSLVKILHSGL 2
           LLLMHLVWQ   + +NL  I + SLV+ LHSGL
Sbjct: 284 LLLMHLVWQKTLKMRNLKLIMKSSLVESLHSGL 316


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 42/90 (46%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
 Frame = -3

Query: 269  AEDKRNMKKNASEQLSDSGAQHSSQTSNSPIDHPYSIAKDRPRRERKSPDRY-GYADFVA 93
            A +K ++  N  E + +    +SS    SP     SIAKDRP+R  K P RY   A+ VA
Sbjct: 954  APEKEDVAINQDEPVIEDS--NSSIVQQSP---KRSIAKDRPKRNIKPPQRYIEEANIVA 1008

Query: 92   YALSVADEIQGE-EPGTYQEAITSEDSAQW 6
            YALSVA+EI+G  EP TY EAI S+D  +W
Sbjct: 1009 YALSVAEEIEGNAEPSTYSEAIVSDDCNRW 1038


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
 Frame = -3

Query: 263  DKRNMKKNASEQLSDSGAQHSSQTSNSPID--HPYSIAKDRPRRERKSPDRYGYADFVAY 90
            DK + K+ AS+    +      + S  P      Y +A+DR RRE ++P RYGYAD +AY
Sbjct: 742  DKSSEKEAASDDERATAESEEHEVSELPQADLQNYQLARDRVRREVRAPVRYGYADLIAY 801

Query: 89   ALSVADEIQGEEPGTYQEAITSEDSAQW 6
            AL  ADE+  EEP  + EA+ S    +W
Sbjct: 802  ALLCADEVTIEEPANFSEAMESVHCDKW 829


>emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]
          Length = 947

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 32/90 (35%), Positives = 51/90 (56%)
 Frame = -3

Query: 284 QVEFEAEDKRNMKKNASEQLSDSGAQHSSQTSNSPIDHPYSIAKDRPRRERKSPDRYGYA 105
           ++E+E        + +SE + +   Q         ++  YS+A+DR +R+ K P +YG A
Sbjct: 705 EMEYETSQPEKSTETSSETVQEEIVQERQDEPTRGLES-YSLARDRQKRQVKPPKKYGQA 763

Query: 104 DFVAYALSVADEIQGEEPGTYQEAITSEDS 15
           +   +ALSVA+EI   EP TYQEAI S ++
Sbjct: 764 EMTTFALSVAEEIVDMEPKTYQEAINSNEA 793


>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1138

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 12/79 (15%)
 Frame = -3

Query: 206 HSSQTSNSPIDHP----------YSIAKDRPRRERKSPDRY-GYADFVAYALSVADEIQG 60
           H   ++N PI+            +SIAKD+P+R  + P RY   A+ VAYALSVA+EI+G
Sbjct: 588 HDKPSTNVPIESQEKASVQQSPKHSIAKDKPKRNTRPPQRYIEEANIVAYALSVAEEIEG 647

Query: 59  E-EPGTYQEAITSEDSAQW 6
             EP TY EAI S+D  +W
Sbjct: 648 NAEPSTYSEAIVSDDCNRW 666


>gb|ABA93547.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 546

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
 Frame = -3

Query: 197 QTSNSPIDHPY---SIAKDRPRRERKSPDRY-GYADFVAYALSVADEIQGE-EPGTYQEA 33
           + S+S   H Y   SIAKDRP+R  K P RY   A+ V YALSVA+EI+G  EP TY +A
Sbjct: 372 EDSDSSTVHQYPKRSIAKDRPKRNTKPPQRYIEEANIVVYALSVAEEIEGNAEPSTYSKA 431

Query: 32  ITSEDSAQW 6
           + S+D  +W
Sbjct: 432 VVSDDCNRW 440


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
 Frame = -3

Query: 269  AEDKRNMKKNASEQ-LSDSGAQHSSQTSNSPIDHPYSIAKDRPRRERKSPDRY-GYADFV 96
            A +K N+  N     + DS +    Q+S        SIAKD+P+R  K P RY   A+ V
Sbjct: 782  APEKENVAINQDAPVIEDSDSSIVQQSSKR------SIAKDKPKRNIKPPRRYIEEANIV 835

Query: 95   AYALSVADEIQGE-EPGTYQEAITSEDSAQW 6
            AYALSVA+EI+G  EP TY EAI S+D  +W
Sbjct: 836  AYALSVAEEIEGNAEPSTYSEAIVSDDCNRW 866


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
           gi|20087076|gb|AAM10749.1|AC112514_2 Putative
           retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
 Frame = -3

Query: 269 AEDKRNMKKNASEQLSDSGAQHSSQTSNSPIDHPYSIAKDRPRRERKSPDRY-GYADFVA 93
           A +K N+  N    + +     SS    SP    +SIAKD+P+R  K P RY   A+ VA
Sbjct: 708 APEKENVAINLDAPVIEDS--DSSIVQQSP---KHSIAKDKPKRNIKPPRRYIEEANIVA 762

Query: 92  YALSVADEIQGE-EPGTYQEAITSEDSAQW 6
           YALSVA+EI+G  EP TY +AI S+D  +W
Sbjct: 763 YALSVAEEIEGNVEPSTYSDAIVSDDCNRW 792


>emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera]
          Length = 894

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 35/93 (37%), Positives = 50/93 (53%)
 Frame = -3

Query: 284 QVEFEAEDKRNMKKNASEQLSDSGAQHSSQTSNSPIDHPYSIAKDRPRRERKSPDRYGYA 105
           +VE E       K+ +S+ + +    H  Q   +     YS+A+DR +R+ K P RY  A
Sbjct: 623 EVEHETLQPEKSKETSSKTVQED-IVHEIQDEPTXGLESYSLARDRQKRQVKPPKRYXQA 681

Query: 104 DFVAYALSVADEIQGEEPGTYQEAITSEDSAQW 6
           +   +ALSVA+EI   EP TYQEAI   +  QW
Sbjct: 682 EXXTFALSVAEEIVDMEPKTYQEAINXNEVDQW 714


>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1262

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
 Frame = -3

Query: 269 AEDKRNMKKNASEQLSDSGAQHSSQTSNSPIDHPYSIAKDRPRRERKSPDRY-GYADFVA 93
           A +K N+  N    + +     SS    SP    +SIAKD+P+R  K P RY   A+ VA
Sbjct: 745 APEKENVAINLDAPVIEDS--DSSIVQQSP---KHSIAKDKPKRNIKPPRRYIEEANIVA 799

Query: 92  YALSVADEIQGE-EPGTYQEAITSEDSAQW 6
           YALSVA+EI+G  EP TY +AI S+D  +W
Sbjct: 800 YALSVAEEIEGNVEPSTYSDAIVSDDCNRW 829


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
 Frame = -3

Query: 269  AEDKRNMKKNASEQ-LSDSGAQHSSQTSNSPIDHPYSIAKDRPRRERKSPDRY-GYADFV 96
            A +K N+  N     + DS +    Q+S        SIAKD+P+R  K P RY   A+ V
Sbjct: 782  APEKENVAINQDAPVIEDSDSSIVQQSSKR------SIAKDKPKRNIKPPRRYIEEANIV 835

Query: 95   AYALSVADEIQGE-EPGTYQEAITSEDSAQW 6
            AYALSVA+EI+G  EP TY EAI S+D  +W
Sbjct: 836  AYALSVAEEIEGNAEPSTYSEAIVSDDCNRW 866


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 33/55 (60%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
 Frame = -3

Query: 164 SIAKDRPRRERKSPDRY-GYADFVAYALSVADEIQGE-EPGTYQEAITSEDSAQW 6
           SIAKDRP+R  K P RY   A+ VAYALSVA+EI+G  EP TY +AI S+D  +W
Sbjct: 686 SIAKDRPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSDAIVSDDCNRW 740


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 11/78 (14%)
 Frame = -3

Query: 206 HSSQTSNSPIDHPY---------SIAKDRPRRERKSPDRY-GYADFVAYALSVADEIQGE 57
           H   ++N P++            SIAKD+P+R  K P RY   A+ VAYALSV +EI+G 
Sbjct: 547 HDKPSTNVPVESQEKASVQFPKRSIAKDKPKRNTKPPQRYIEEANIVAYALSVTEEIEGN 606

Query: 56  -EPGTYQEAITSEDSAQW 6
            EP TY EAI S+D  +W
Sbjct: 607 AEPSTYSEAIVSDDCNRW 624


>emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]
          Length = 621

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 32/55 (58%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
 Frame = -3

Query: 164 SIAKDRPRRERKSPDRY-GYADFVAYALSVADEIQGE-EPGTYQEAITSEDSAQW 6
           SIAK++P+R  K P RY   A+ VAYALSVA+EI+G  EP TY EAI S+D  +W
Sbjct: 163 SIAKEKPKRSTKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRW 217


>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 983

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 37/69 (53%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
 Frame = -3

Query: 197 QTSNSPIDHPY---SIAKDRPRRERKSPDRY-GYADFVAYALSVADEIQGE-EPGTYQEA 33
           Q S+S I H     SIAKD+P+R  K P RY   A+ VAYALSVA+EI+G  EP  Y EA
Sbjct: 505 QDSDSSIVHQSPKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSIYSEA 564

Query: 32  ITSEDSAQW 6
           I S+D  +W
Sbjct: 565 IVSDDCNRW 573