BLASTX nr result
ID: Cocculus23_contig00039147
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00039147
(240 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 140 2e-31
gb|ADG59810.1| gag-pol polyprotein [Fraxinus excelsior] 137 1e-30
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 136 3e-30
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 135 8e-30
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 134 1e-29
gb|AFB73912.1| polyprotein [Citrus sinensis] 134 1e-29
ref|XP_006484589.1| PREDICTED: uncharacterized protein LOC102625... 134 2e-29
gb|AFB73911.1| polyprotein [Citrus sinensis] 134 2e-29
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 133 2e-29
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 132 7e-29
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 115 8e-24
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 113 2e-23
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 113 2e-23
ref|NP_001174752.1| Os06g0316600 [Oryza sativa Japonica Group] g... 113 3e-23
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 112 4e-23
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g... 112 4e-23
gb|AAK29467.1| polyprotein-like [Solanum chilense] 112 4e-23
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 112 5e-23
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 112 7e-23
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 112 7e-23
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 140 bits (353), Expect = 2e-31
Identities = 63/78 (80%), Positives = 71/78 (91%)
Frame = -3
Query: 235 RTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRTTGLDK 56
RTDNGGEYTS EFD FC++EG+ RQFTVAYTPQQNGVAERMNRTLL++TRAMLR GL+K
Sbjct: 538 RTDNGGEYTSEEFDDFCKKEGIKRQFTVAYTPQQNGVAERMNRTLLERTRAMLRAAGLEK 597
Query: 55 QFWAEAVRTACYVINRAP 2
FWAEAV TACY++NRAP
Sbjct: 598 SFWAEAVNTACYLVNRAP 615
>gb|ADG59810.1| gag-pol polyprotein [Fraxinus excelsior]
Length = 188
Score = 137 bits (346), Expect = 1e-30
Identities = 63/79 (79%), Positives = 72/79 (91%)
Frame = -3
Query: 238 LRTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRTTGLD 59
LRTDN GEYT EFD+FC+QEG+ RQ TVAYTPQQNGVAERMNRTLL++TRAMLRTTG+
Sbjct: 42 LRTDNEGEYTGVEFDSFCQQEGIKRQLTVAYTPQQNGVAERMNRTLLERTRAMLRTTGMT 101
Query: 58 KQFWAEAVRTACYVINRAP 2
K FWAEAV+TACYVIN++P
Sbjct: 102 KSFWAEAVKTACYVINQSP 120
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 136 bits (342), Expect = 3e-30
Identities = 62/79 (78%), Positives = 71/79 (89%)
Frame = -3
Query: 238 LRTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRTTGLD 59
LRTDNGGEYT +F AFC+QEG+ RQFTVA+TPQQNGVAERMNRTLL++TRAML+T GL
Sbjct: 547 LRTDNGGEYTDGDFLAFCKQEGITRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGLA 606
Query: 58 KQFWAEAVRTACYVINRAP 2
K FWAEA +TACYVINR+P
Sbjct: 607 KSFWAEAAKTACYVINRSP 625
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 135 bits (339), Expect = 8e-30
Identities = 62/79 (78%), Positives = 71/79 (89%)
Frame = -3
Query: 238 LRTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRTTGLD 59
LRTDNGGEY EF AFC+QEG+ RQFTVA+TPQQNGVAERMNRTLL++TRAML+T G+
Sbjct: 547 LRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMA 606
Query: 58 KQFWAEAVRTACYVINRAP 2
K FWAEAV+TACYVINR+P
Sbjct: 607 KSFWAEAVKTACYVINRSP 625
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 134 bits (338), Expect = 1e-29
Identities = 62/79 (78%), Positives = 71/79 (89%)
Frame = -3
Query: 238 LRTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRTTGLD 59
LRTDNGGEY EF AFC+QEG+ RQFTVA+TPQQNGVAERMNRTLL++TRAML+T G+
Sbjct: 547 LRTDNGGEYIDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMA 606
Query: 58 KQFWAEAVRTACYVINRAP 2
K FWAEAV+TACYVINR+P
Sbjct: 607 KSFWAEAVKTACYVINRSP 625
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 134 bits (337), Expect = 1e-29
Identities = 60/79 (75%), Positives = 69/79 (87%)
Frame = -3
Query: 238 LRTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRTTGLD 59
LRTDNGGEYT +EF AFC+QEG+ RQFTVAYTPQQNGVAERMNRTL ++ RAMLRT GL
Sbjct: 547 LRTDNGGEYTDSEFLAFCKQEGIQRQFTVAYTPQQNGVAERMNRTLTERIRAMLRTAGLP 606
Query: 58 KQFWAEAVRTACYVINRAP 2
FWAEA +TACY++NR+P
Sbjct: 607 NSFWAEAAKTACYIVNRSP 625
>ref|XP_006484589.1| PREDICTED: uncharacterized protein LOC102625372 [Citrus sinensis]
Length = 1258
Score = 134 bits (336), Expect = 2e-29
Identities = 60/79 (75%), Positives = 69/79 (87%)
Frame = -3
Query: 238 LRTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRTTGLD 59
LRTDNGGEYT +EF AFC+QEG+ RQFTVAYTPQQNGVAERMNRTL ++ RAMLRT GL
Sbjct: 551 LRTDNGGEYTDDEFFAFCKQEGIQRQFTVAYTPQQNGVAERMNRTLTERIRAMLRTAGLP 610
Query: 58 KQFWAEAVRTACYVINRAP 2
FWAEA +TACY++NR+P
Sbjct: 611 NLFWAEAAKTACYIVNRSP 629
Score = 99.8 bits (247), Expect = 4e-19
Identities = 46/56 (82%), Positives = 51/56 (91%)
Frame = -3
Query: 238 LRTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRT 71
LRTDNGGEYT +EF AFC+QEG+ RQFTVAYTPQQNGVAERMNRTL ++ RAMLRT
Sbjct: 214 LRTDNGGEYTDDEFFAFCKQEGIQRQFTVAYTPQQNGVAERMNRTLTERIRAMLRT 269
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 134 bits (336), Expect = 2e-29
Identities = 60/79 (75%), Positives = 68/79 (86%)
Frame = -3
Query: 238 LRTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRTTGLD 59
LRTDNGGEYT EF AFC+QEG+ RQFTVAYTPQQNGVAERMNRTL ++ RAMLRT GL
Sbjct: 547 LRTDNGGEYTDGEFLAFCKQEGIQRQFTVAYTPQQNGVAERMNRTLTERIRAMLRTAGLP 606
Query: 58 KQFWAEAVRTACYVINRAP 2
FWAEA +TACY++NR+P
Sbjct: 607 NSFWAEAAKTACYIVNRSP 625
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 133 bits (335), Expect = 2e-29
Identities = 61/79 (77%), Positives = 70/79 (88%)
Frame = -3
Query: 238 LRTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRTTGLD 59
LRTDNGGEY EF AFC+QEG+ RQFTVA+TPQQNGVAERMNRTLL++TRAML+T G+
Sbjct: 547 LRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMA 606
Query: 58 KQFWAEAVRTACYVINRAP 2
K FWAEA +TACYVINR+P
Sbjct: 607 KSFWAEAAKTACYVINRSP 625
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 132 bits (331), Expect = 7e-29
Identities = 61/79 (77%), Positives = 70/79 (88%)
Frame = -3
Query: 238 LRTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRTTGLD 59
LRTDNGGEY EF AFC+QEG+ RQFTVA+TPQQNGVAERMNRTLL++TRAML+T +
Sbjct: 547 LRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAEMA 606
Query: 58 KQFWAEAVRTACYVINRAP 2
K FWAEAV+TACYVINR+P
Sbjct: 607 KSFWAEAVKTACYVINRSP 625
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 115 bits (287), Expect = 8e-24
Identities = 50/79 (63%), Positives = 63/79 (79%)
Frame = -3
Query: 238 LRTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRTTGLD 59
LRTDNGGE+ S+ FD +CR+EG+ R T+ YTPQQNGVAERMNRT++ K R ML ++
Sbjct: 551 LRTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMN 610
Query: 58 KQFWAEAVRTACYVINRAP 2
K+FWAEA TACY+INR+P
Sbjct: 611 KRFWAEAANTACYLINRSP 629
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 113 bits (283), Expect = 2e-23
Identities = 51/79 (64%), Positives = 62/79 (78%)
Frame = -3
Query: 238 LRTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRTTGLD 59
LRTDNG E+ S F ++C+ EG+ R +TV +TPQQNGVAERMNRT++ K R ML GL
Sbjct: 375 LRTDNGMEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLP 434
Query: 58 KQFWAEAVRTACYVINRAP 2
KQFWAEAV TACY+INR+P
Sbjct: 435 KQFWAEAVSTACYLINRSP 453
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 113 bits (283), Expect = 2e-23
Identities = 51/79 (64%), Positives = 62/79 (78%)
Frame = -3
Query: 238 LRTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRTTGLD 59
LRTDNG E+ S F ++C+ EG+ R +TV +TPQQNGVAERMNRT++ K R ML GL
Sbjct: 543 LRTDNGMEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLP 602
Query: 58 KQFWAEAVRTACYVINRAP 2
KQFWAEAV TACY+INR+P
Sbjct: 603 KQFWAEAVSTACYLINRSP 621
>ref|NP_001174752.1| Os06g0316600 [Oryza sativa Japonica Group]
gi|255676990|dbj|BAH93480.1| Os06g0316600 [Oryza sativa
Japonica Group]
Length = 759
Score = 113 bits (282), Expect = 3e-23
Identities = 49/79 (62%), Positives = 62/79 (78%)
Frame = -3
Query: 238 LRTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRTTGLD 59
LRTDNGGE+ S+ FD +CR+EG+ R T+ YTPQQNGVAE MNRT++ K R ML ++
Sbjct: 369 LRTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAEHMNRTIISKARCMLSNARMN 428
Query: 58 KQFWAEAVRTACYVINRAP 2
K+FWAEA TACY+INR+P
Sbjct: 429 KRFWAEAANTACYLINRSP 447
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 112 bits (281), Expect = 4e-23
Identities = 49/79 (62%), Positives = 62/79 (78%)
Frame = -3
Query: 238 LRTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRTTGLD 59
LRTDN GE+ S+ FD +CR+EG+ R T+ YTPQQNGVAERMNRT++ K R ML ++
Sbjct: 551 LRTDNAGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMN 610
Query: 58 KQFWAEAVRTACYVINRAP 2
K+FWAEA TACY+INR+P
Sbjct: 611 KRFWAEAANTACYLINRSP 629
>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
Japonica Group]
Length = 778
Score = 112 bits (281), Expect = 4e-23
Identities = 50/79 (63%), Positives = 62/79 (78%)
Frame = -3
Query: 238 LRTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRTTGLD 59
LRTDNG E+ S F ++C+ EG+ R +T+ +TPQQNGVAERMNRT++ K R ML GL
Sbjct: 524 LRTDNGMEFCSKIFKSYCKSEGIVRHYTIPHTPQQNGVAERMNRTIISKARCMLSNAGLP 583
Query: 58 KQFWAEAVRTACYVINRAP 2
KQFWAEAV TACY+INR+P
Sbjct: 584 KQFWAEAVSTACYLINRSP 602
>gb|AAK29467.1| polyprotein-like [Solanum chilense]
Length = 1328
Score = 112 bits (281), Expect = 4e-23
Identities = 51/79 (64%), Positives = 61/79 (77%)
Frame = -3
Query: 238 LRTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRTTGLD 59
LRTDNGGEYTS EF+ +C G+ + TV TPQ NGVAERMNRT+++K R+MLR L
Sbjct: 548 LRTDNGGEYTSREFEEYCSNHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLP 607
Query: 58 KQFWAEAVRTACYVINRAP 2
K FW EAVRTACY+INR+P
Sbjct: 608 KTFWGEAVRTACYLINRSP 626
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 112 bits (280), Expect = 5e-23
Identities = 52/79 (65%), Positives = 62/79 (78%)
Frame = -3
Query: 238 LRTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRTTGLD 59
LRTDNG E+ +EFD FC+ EG+ R TV TPQQNGVAERMN+TLL++ R ML GLD
Sbjct: 536 LRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLD 595
Query: 58 KQFWAEAVRTACYVINRAP 2
++FWAEAV TACY+INR P
Sbjct: 596 RRFWAEAVSTACYLINRGP 614
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 112 bits (279), Expect = 7e-23
Identities = 50/79 (63%), Positives = 62/79 (78%)
Frame = -3
Query: 238 LRTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRTTGLD 59
LRTDNG E+ S F ++C+ EG+ R +TV +TPQQNGVAERMNRT++ K R +L GL
Sbjct: 765 LRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLP 824
Query: 58 KQFWAEAVRTACYVINRAP 2
KQFWAEAV TACY+INR+P
Sbjct: 825 KQFWAEAVSTACYLINRSP 843
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 112 bits (279), Expect = 7e-23
Identities = 50/79 (63%), Positives = 62/79 (78%)
Frame = -3
Query: 238 LRTDNGGEYTSNEFDAFCRQEGVNRQFTVAYTPQQNGVAERMNRTLLDKTRAMLRTTGLD 59
LRTDNG ++ S F ++C+ EG+ R +TV +TPQQNGVAERMNRT++ K R ML GL
Sbjct: 519 LRTDNGMDFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLP 578
Query: 58 KQFWAEAVRTACYVINRAP 2
KQFWAEAV TACY+INR+P
Sbjct: 579 KQFWAEAVSTACYLINRSP 597