BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00038415
         (703 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   118   7e-45
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   118   2e-44
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...   117   2e-44
emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana]         117   2e-44
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         117   4e-44
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   117   4e-44
gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]             115   7e-44
gb|AGH20677.1| reverse transcriptase, partial [Olimarabidopsis c...   119   3e-43
gb|AFK88543.1| reverse transcriptase, partial [Arabidopsis halle...   118   8e-43
gb|AFK88542.1| reverse transcriptase, partial [Arabidopsis halle...   118   8e-43
gb|AFK88541.1| reverse transcriptase, partial [Arabidopsis halle...   118   8e-43
gb|AFK88547.1| reverse transcriptase, partial [Arabidopsis halle...   118   2e-42
gb|AFK88546.1| reverse transcriptase, partial [Arabidopsis halle...   118   2e-42
gb|AFK88544.1| reverse transcriptase, partial [Arabidopsis halle...   117   2e-42
gb|AGH20678.1| reverse transcriptase, partial [Olimarabidopsis c...   116   3e-42
gb|AGH20673.1| reverse transcriptase, partial [Crucihimalaya wal...   118   4e-42
gb|AGH20671.1| reverse transcriptase, partial [Thlaspi arvense]       118   6e-42
gb|AGH20676.1| reverse transcriptase, partial [Olimarabidopsis c...   115   6e-42
gb|AGH20667.1| reverse transcriptase, partial [Arabis hirsuta]        114   6e-42
gb|AFK88553.1| reverse transcriptase, partial [Arabidopsis halle...   117   8e-42

>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  118 bits (296), Expect(2) = 7e-45
 Identities = 52/83 (62%), Positives = 67/83 (80%)
 Frame = +3

Query: 453  SKNHWKIHQMEVK*AFLNGQLEEDVFVKQLSGFIKKGNEDKVYKLKKALYGLKRAPRAWN 632
            ++N WKIHQM+VK AFLNG LEE+V+++Q  G+I KG EDKV +LKKALYGLK+APRAWN
Sbjct: 904  AQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWN 963

Query: 633  KRIDSFFHRTRFKKCSFDHAIYV 701
             RID +F    F KC ++HA+Y+
Sbjct: 964  TRIDKYFKEKDFIKCPYEHALYI 986



 Score = 89.4 bits (220), Expect(2) = 7e-45
 Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
 Frame = +1

Query: 265  CEPTNF-EAFQDPKWLNAMNEEIKAIEKNNTWELTKIP*GQKAIDVKWVFKT*LKSNGEV 441
            CEP +F EA +   W NAM+EEIK+I+KN+TWELT +P G KAI VKWV+K    S GEV
Sbjct: 804  CEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEV 863

Query: 442  ERHKARIIGK 471
            ER+KAR++ K
Sbjct: 864  ERYKARLVAK 873



 Score = 42.4 bits (98), Expect(2) = 6e-07
 Identities = 16/28 (57%), Positives = 22/28 (78%)
 Frame = +2

Query: 71  SQKMPNSFWGKVVSCSVYLLNRSPTKKV 154
           S+++P   W + V+C+VYLLNRSPTK V
Sbjct: 648 SKRLPKELWAEAVACAVYLLNRSPTKSV 675



 Score = 37.7 bits (86), Expect(2) = 6e-07
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +3

Query: 6   QHNGVVEQMNRTIMSMTQSMLKAKKCP 86
           Q NGV E+ NRTI+ M +SMLK+K+ P
Sbjct: 626 QQNGVAERKNRTILEMARSMLKSKRLP 652


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  118 bits (296), Expect(2) = 2e-44
 Identities = 52/83 (62%), Positives = 67/83 (80%)
 Frame = +3

Query: 453  SKNHWKIHQMEVK*AFLNGQLEEDVFVKQLSGFIKKGNEDKVYKLKKALYGLKRAPRAWN 632
            ++N WKIHQM+VK AFLNG LEE+V+++Q  G+I KG EDKV +LKKALYGLK+APRAWN
Sbjct: 936  AQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWN 995

Query: 633  KRIDSFFHRTRFKKCSFDHAIYV 701
             RID +F    F KC ++HA+Y+
Sbjct: 996  TRIDKYFKEKDFIKCPYEHALYI 1018



 Score = 87.8 bits (216), Expect(2) = 2e-44
 Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
 Frame = +1

Query: 265  CEPTNF-EAFQDPKWLNAMNEEIKAIEKNNTWELTKIP*GQKAIDVKWVFKT*LKSNGEV 441
            CEP +F EA +   W NAM+EEIK+I+KN+TWELT +P G K I VKWV+K    S GEV
Sbjct: 836  CEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKTIGVKWVYKAKKNSKGEV 895

Query: 442  ERHKARIIGK 471
            ER+KAR++ K
Sbjct: 896  ERYKARLVAK 905



 Score = 42.4 bits (98), Expect(2) = 6e-07
 Identities = 16/28 (57%), Positives = 22/28 (78%)
 Frame = +2

Query: 71  SQKMPNSFWGKVVSCSVYLLNRSPTKKV 154
           S+++P   W + V+C+VYLLNRSPTK V
Sbjct: 648 SKRLPKELWAEAVACAVYLLNRSPTKSV 675



 Score = 37.7 bits (86), Expect(2) = 6e-07
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +3

Query: 6   QHNGVVEQMNRTIMSMTQSMLKAKKCP 86
           Q NGV E+ NRTI+ M +SMLK+K+ P
Sbjct: 626 QQNGVAERKNRTILEMARSMLKSKRLP 652


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1272

 Score =  117 bits (292), Expect(2) = 2e-44
 Identities = 51/83 (61%), Positives = 66/83 (79%)
 Frame = +3

Query: 453  SKNHWKIHQMEVK*AFLNGQLEEDVFVKQLSGFIKKGNEDKVYKLKKALYGLKRAPRAWN 632
            ++N WKIHQM+VK AFLNG LEE+V+++Q  G+I KG EDKV +LKK LYGLK+APRAWN
Sbjct: 936  AQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWN 995

Query: 633  KRIDSFFHRTRFKKCSFDHAIYV 701
             RID +F    F KC ++HA+Y+
Sbjct: 996  TRIDKYFKEKDFIKCPYEHALYI 1018



 Score = 89.4 bits (220), Expect(2) = 2e-44
 Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
 Frame = +1

Query: 265  CEPTNF-EAFQDPKWLNAMNEEIKAIEKNNTWELTKIP*GQKAIDVKWVFKT*LKSNGEV 441
            CEP +F EA +   W NAM+EEIK+I+KN+TWELT +P G KAI VKWV+K    S GEV
Sbjct: 836  CEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEV 895

Query: 442  ERHKARIIGK 471
            ER+KAR++ K
Sbjct: 896  ERYKARLVAK 905



 Score = 42.4 bits (98), Expect(2) = 6e-07
 Identities = 16/28 (57%), Positives = 22/28 (78%)
 Frame = +2

Query: 71  SQKMPNSFWGKVVSCSVYLLNRSPTKKV 154
           S+++P   W + V+C+VYLLNRSPTK V
Sbjct: 648 SKRLPKELWAEAVACAVYLLNRSPTKSV 675



 Score = 37.7 bits (86), Expect(2) = 6e-07
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +3

Query: 6   QHNGVVEQMNRTIMSMTQSMLKAKKCP 86
           Q NGV E+ NRTI+ M +SMLK+K+ P
Sbjct: 626 QQNGVAERKNRTILEMARSMLKSKRLP 652


>emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana]
          Length = 623

 Score =  117 bits (292), Expect(2) = 2e-44
 Identities = 51/83 (61%), Positives = 66/83 (79%)
 Frame = +3

Query: 453 SKNHWKIHQMEVK*AFLNGQLEEDVFVKQLSGFIKKGNEDKVYKLKKALYGLKRAPRAWN 632
           ++N WKIHQM+VK AFLNG LEE+V+++Q  G+I KG EDKV +LKK LYGLK+APRAWN
Sbjct: 433 AQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWN 492

Query: 633 KRIDSFFHRTRFKKCSFDHAIYV 701
            RID +F    F KC ++HA+Y+
Sbjct: 493 TRIDKYFKEKDFIKCPYEHALYI 515



 Score = 89.4 bits (220), Expect(2) = 2e-44
 Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
 Frame = +1

Query: 265 CEPTNF-EAFQDPKWLNAMNEEIKAIEKNNTWELTKIP*GQKAIDVKWVFKT*LKSNGEV 441
           CEP +F EA +   W NAM+EEIK+I+KN+TWELT +P G KAI VKWV+K    S GEV
Sbjct: 333 CEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEV 392

Query: 442 ERHKARIIGK 471
           ER+KAR++ K
Sbjct: 393 ERYKARLVAK 402



 Score = 42.4 bits (98), Expect(2) = 6e-07
 Identities = 16/28 (57%), Positives = 22/28 (78%)
 Frame = +2

Query: 71  SQKMPNSFWGKVVSCSVYLLNRSPTKKV 154
           S+++P   W + V+C+VYLLNRSPTK V
Sbjct: 145 SKRLPKELWAEAVACAVYLLNRSPTKSV 172



 Score = 37.7 bits (86), Expect(2) = 6e-07
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +3

Query: 6   QHNGVVEQMNRTIMSMTQSMLKAKKCP 86
           Q NGV E+ NRTI+ M +SMLK+K+ P
Sbjct: 123 QQNGVAERKNRTILEMARSMLKSKRLP 149


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  117 bits (292), Expect(2) = 4e-44
 Identities = 51/83 (61%), Positives = 66/83 (79%)
 Frame = +3

Query: 453  SKNHWKIHQMEVK*AFLNGQLEEDVFVKQLSGFIKKGNEDKVYKLKKALYGLKRAPRAWN 632
            ++N WKIHQM+VK AFLNG LEE+V+++Q  G+I KG EDKV +LKK LYGLK+APRAWN
Sbjct: 936  AQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWN 995

Query: 633  KRIDSFFHRTRFKKCSFDHAIYV 701
             RID +F    F KC ++HA+Y+
Sbjct: 996  TRIDKYFKEKDFIKCPYEHALYI 1018



 Score = 88.2 bits (217), Expect(2) = 4e-44
 Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
 Frame = +1

Query: 265  CEPTNFE-AFQDPKWLNAMNEEIKAIEKNNTWELTKIP*GQKAIDVKWVFKT*LKSNGEV 441
            CEP +F+ A +   W NAM+EEIK+I+KN+TWELT +P G KAI VKWV+K    S GEV
Sbjct: 836  CEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEV 895

Query: 442  ERHKARIIGK 471
            ER+KAR++ K
Sbjct: 896  ERYKARLVAK 905



 Score = 42.4 bits (98), Expect(2) = 2e-07
 Identities = 16/28 (57%), Positives = 22/28 (78%)
 Frame = +2

Query: 71  SQKMPNSFWGKVVSCSVYLLNRSPTKKV 154
           S+++P   W + V+C+VYLLNRSPTK V
Sbjct: 648 SKRLPKELWAEAVACAVYLLNRSPTKSV 675



 Score = 39.3 bits (90), Expect(2) = 2e-07
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +3

Query: 6   QHNGVVEQMNRTIMSMTQSMLKAKKCP 86
           Q NGVVE+ NRTI+ M +SMLK+K+ P
Sbjct: 626 QQNGVVERKNRTILEMARSMLKSKRLP 652


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  117 bits (292), Expect(2) = 4e-44
 Identities = 51/83 (61%), Positives = 66/83 (79%)
 Frame = +3

Query: 453  SKNHWKIHQMEVK*AFLNGQLEEDVFVKQLSGFIKKGNEDKVYKLKKALYGLKRAPRAWN 632
            ++N WKIHQM+VK AFLNG LEE+V+++Q  G+I KG EDKV +LKK LYGLK+APRAWN
Sbjct: 936  AQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWN 995

Query: 633  KRIDSFFHRTRFKKCSFDHAIYV 701
             RID +F    F KC ++HA+Y+
Sbjct: 996  TRIDKYFKEKDFIKCPYEHALYI 1018



 Score = 88.2 bits (217), Expect(2) = 4e-44
 Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
 Frame = +1

Query: 265  CEPTNFE-AFQDPKWLNAMNEEIKAIEKNNTWELTKIP*GQKAIDVKWVFKT*LKSNGEV 441
            CEP +F+ A +   W NAM+EEIK+I+KN+TWELT +P G KAI VKWV+K    S GEV
Sbjct: 836  CEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEV 895

Query: 442  ERHKARIIGK 471
            ER+KAR++ K
Sbjct: 896  ERYKARLVAK 905



 Score = 42.4 bits (98), Expect(2) = 2e-07
 Identities = 16/28 (57%), Positives = 22/28 (78%)
 Frame = +2

Query: 71  SQKMPNSFWGKVVSCSVYLLNRSPTKKV 154
           S+++P   W + V+C+VYLLNRSPTK V
Sbjct: 648 SKRLPKELWAEAVACAVYLLNRSPTKSV 675



 Score = 39.3 bits (90), Expect(2) = 2e-07
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +3

Query: 6   QHNGVVEQMNRTIMSMTQSMLKAKKCP 86
           Q NGVVE+ NRTI+ M +SMLK+K+ P
Sbjct: 626 QQNGVVERKNRTILEMARSMLKSKRLP 652


>gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]
          Length = 1291

 Score =  115 bits (287), Expect(2) = 7e-44
 Identities = 50/83 (60%), Positives = 65/83 (78%)
 Frame = +3

Query: 453  SKNHWKIHQMEVK*AFLNGQLEEDVFVKQLSGFIKKGNEDKVYKLKKALYGLKRAPRAWN 632
            ++N WKIHQM+ K AFLNG  EE+V+++Q  G+I KG EDKV +LKKALYGLK+APRAWN
Sbjct: 875  AQNKWKIHQMDFKLAFLNGDFEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWN 934

Query: 633  KRIDSFFHRTRFKKCSFDHAIYV 701
             RID +F    F KC ++HA+Y+
Sbjct: 935  TRIDKYFKEKDFIKCPYEHALYI 957



 Score = 89.4 bits (220), Expect(2) = 7e-44
 Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
 Frame = +1

Query: 265 CEPTNF-EAFQDPKWLNAMNEEIKAIEKNNTWELTKIP*GQKAIDVKWVFKT*LKSNGEV 441
           CEP +F EA +   W NAM+EEIK+I+KN+TWELT +P G KAI VKWV+K    S GEV
Sbjct: 775 CEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEV 834

Query: 442 ERHKARIIGK 471
           ER+KAR++ K
Sbjct: 835 ERYKARLVAK 844



 Score = 42.4 bits (98), Expect(2) = 6e-07
 Identities = 16/28 (57%), Positives = 22/28 (78%)
 Frame = +2

Query: 71  SQKMPNSFWGKVVSCSVYLLNRSPTKKV 154
           S+++P   W + V+C+VYLLNRSPTK V
Sbjct: 587 SKRLPKELWAEAVACAVYLLNRSPTKSV 614



 Score = 37.7 bits (86), Expect(2) = 6e-07
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +3

Query: 6   QHNGVVEQMNRTIMSMTQSMLKAKKCP 86
           Q NGV E+ NRTI+ M +SMLK+K+ P
Sbjct: 565 QQNGVAERKNRTILEMARSMLKSKRLP 591


>gb|AGH20677.1| reverse transcriptase, partial [Olimarabidopsis cabulica]
          Length = 286

 Score =  119 bits (299), Expect(2) = 3e-43
 Identities = 53/83 (63%), Positives = 67/83 (80%)
 Frame = +3

Query: 453 SKNHWKIHQMEVK*AFLNGQLEEDVFVKQLSGFIKKGNEDKVYKLKKALYGLKRAPRAWN 632
           ++N WKIHQM+VK AFLNG LEE+V+++Q  G+I KG EDKV KLKKALYGLK+APRAWN
Sbjct: 97  AQNEWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIIKGEEDKVLKLKKALYGLKQAPRAWN 156

Query: 633 KRIDSFFHRTRFKKCSFDHAIYV 701
            RID +F    F KC ++HA+Y+
Sbjct: 157 TRIDKYFKEKDFIKCPYEHALYI 179



 Score = 82.8 bits (203), Expect(2) = 3e-43
 Identities = 38/63 (60%), Positives = 47/63 (74%)
 Frame = +1

Query: 283 EAFQDPKWLNAMNEEIKAIEKNNTWELTKIP*GQKAIDVKWVFKT*LKSNGEVERHKARI 462
           EA +   W NAM+EEI AI+KN+TWEL  +P GQKAI VKWV+K    S GEVER+KAR+
Sbjct: 4   EAMEKKTWRNAMDEEINAIQKNDTWELVSLPNGQKAIGVKWVYKAKKNSKGEVERYKARL 63

Query: 463 IGK 471
           + K
Sbjct: 64  VAK 66


>gb|AFK88543.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  118 bits (296), Expect(2) = 8e-43
 Identities = 52/83 (62%), Positives = 67/83 (80%)
 Frame = +3

Query: 453 SKNHWKIHQMEVK*AFLNGQLEEDVFVKQLSGFIKKGNEDKVYKLKKALYGLKRAPRAWN 632
           ++N WKIHQM+VK AFLNG LEE+V+++Q  G+I KG EDKV +LKKALYGLK+APRAWN
Sbjct: 97  AQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWN 156

Query: 633 KRIDSFFHRTRFKKCSFDHAIYV 701
            RID +F    F KC ++HA+Y+
Sbjct: 157 TRIDKYFKEKDFIKCPYEHALYI 179



 Score = 82.4 bits (202), Expect(2) = 8e-43
 Identities = 38/63 (60%), Positives = 47/63 (74%)
 Frame = +1

Query: 283 EAFQDPKWLNAMNEEIKAIEKNNTWELTKIP*GQKAIDVKWVFKT*LKSNGEVERHKARI 462
           EA +   W NAM+EEIKAI+KN+TWEL  +P G KAI VKWV+K    S GEVER+KAR+
Sbjct: 4   EAIEKKTWRNAMDEEIKAIKKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKARL 63

Query: 463 IGK 471
           + K
Sbjct: 64  VAK 66


>gb|AFK88542.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera] gi|389595484|gb|AFK88545.1| reverse
           transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  118 bits (296), Expect(2) = 8e-43
 Identities = 52/83 (62%), Positives = 67/83 (80%)
 Frame = +3

Query: 453 SKNHWKIHQMEVK*AFLNGQLEEDVFVKQLSGFIKKGNEDKVYKLKKALYGLKRAPRAWN 632
           ++N WKIHQM+VK AFLNG LEE+V+++Q  G+I KG EDKV +LKKALYGLK+APRAWN
Sbjct: 97  AQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWN 156

Query: 633 KRIDSFFHRTRFKKCSFDHAIYV 701
            RID +F    F KC ++HA+Y+
Sbjct: 157 TRIDKYFKEKDFIKCPYEHALYI 179



 Score = 82.4 bits (202), Expect(2) = 8e-43
 Identities = 38/63 (60%), Positives = 47/63 (74%)
 Frame = +1

Query: 283 EAFQDPKWLNAMNEEIKAIEKNNTWELTKIP*GQKAIDVKWVFKT*LKSNGEVERHKARI 462
           EA +   W NAM+EEIKAI+KN+TWEL  +P G KAI VKWV+K    S GEVER+KAR+
Sbjct: 4   EAIEKKTWRNAMDEEIKAIKKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKARL 63

Query: 463 IGK 471
           + K
Sbjct: 64  VAK 66


>gb|AFK88541.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  118 bits (296), Expect(2) = 8e-43
 Identities = 52/83 (62%), Positives = 67/83 (80%)
 Frame = +3

Query: 453 SKNHWKIHQMEVK*AFLNGQLEEDVFVKQLSGFIKKGNEDKVYKLKKALYGLKRAPRAWN 632
           ++N WKIHQM+VK AFLNG LEE+V+++Q  G+I KG EDKV +LKKALYGLK+APRAWN
Sbjct: 97  AQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWN 156

Query: 633 KRIDSFFHRTRFKKCSFDHAIYV 701
            RID +F    F KC ++HA+Y+
Sbjct: 157 TRIDKYFKEKDFIKCPYEHALYI 179



 Score = 82.4 bits (202), Expect(2) = 8e-43
 Identities = 38/63 (60%), Positives = 47/63 (74%)
 Frame = +1

Query: 283 EAFQDPKWLNAMNEEIKAIEKNNTWELTKIP*GQKAIDVKWVFKT*LKSNGEVERHKARI 462
           EA +   W NAM+EEIKAI+KN+TWEL  +P G KAI VKWV+K    S GEVER+KAR+
Sbjct: 4   EAIEKKTWRNAMDEEIKAIKKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKARL 63

Query: 463 IGK 471
           + K
Sbjct: 64  VAK 66


>gb|AFK88547.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  118 bits (296), Expect(2) = 2e-42
 Identities = 52/83 (62%), Positives = 67/83 (80%)
 Frame = +3

Query: 453 SKNHWKIHQMEVK*AFLNGQLEEDVFVKQLSGFIKKGNEDKVYKLKKALYGLKRAPRAWN 632
           ++N WKIHQM+VK AFLNG LEE+V+++Q  G+I KG EDKV +LKKALYGLK+APRAWN
Sbjct: 97  AQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWN 156

Query: 633 KRIDSFFHRTRFKKCSFDHAIYV 701
            RID +F    F KC ++HA+Y+
Sbjct: 157 TRIDKYFKEKDFIKCPYEHALYI 179



 Score = 80.9 bits (198), Expect(2) = 2e-42
 Identities = 37/63 (58%), Positives = 46/63 (73%)
 Frame = +1

Query: 283 EAFQDPKWLNAMNEEIKAIEKNNTWELTKIP*GQKAIDVKWVFKT*LKSNGEVERHKARI 462
           EA +   W NAM+EEIKAI+KN+TWEL  +P G KAI VKWV+K    S GEVER+K R+
Sbjct: 4   EAIEKKTWKNAMDEEIKAIKKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKGRL 63

Query: 463 IGK 471
           + K
Sbjct: 64  VAK 66


>gb|AFK88546.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  118 bits (296), Expect(2) = 2e-42
 Identities = 52/83 (62%), Positives = 67/83 (80%)
 Frame = +3

Query: 453 SKNHWKIHQMEVK*AFLNGQLEEDVFVKQLSGFIKKGNEDKVYKLKKALYGLKRAPRAWN 632
           ++N WKIHQM+VK AFLNG LEE+V+++Q  G+I KG EDKV +LKKALYGLK+APRAWN
Sbjct: 97  AQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWN 156

Query: 633 KRIDSFFHRTRFKKCSFDHAIYV 701
            RID +F    F KC ++HA+Y+
Sbjct: 157 TRIDKYFKEKDFIKCPYEHALYI 179



 Score = 80.9 bits (198), Expect(2) = 2e-42
 Identities = 37/63 (58%), Positives = 46/63 (73%)
 Frame = +1

Query: 283 EAFQDPKWLNAMNEEIKAIEKNNTWELTKIP*GQKAIDVKWVFKT*LKSNGEVERHKARI 462
           EA +   W NAM+EEIKAI+KN+TWEL  +P G KAI VKWV+K    S GEVER+K R+
Sbjct: 4   EAIEKKTWKNAMDEEIKAIKKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKGRL 63

Query: 463 IGK 471
           + K
Sbjct: 64  VAK 66


>gb|AFK88544.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  117 bits (293), Expect(2) = 2e-42
 Identities = 51/83 (61%), Positives = 67/83 (80%)
 Frame = +3

Query: 453 SKNHWKIHQMEVK*AFLNGQLEEDVFVKQLSGFIKKGNEDKVYKLKKALYGLKRAPRAWN 632
           ++N WKIHQM+VK AFLNG LEE+V+++Q  G+I KG EDKV +LKKALYGLK+APR+WN
Sbjct: 97  AQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRSWN 156

Query: 633 KRIDSFFHRTRFKKCSFDHAIYV 701
            RID +F    F KC ++HA+Y+
Sbjct: 157 TRIDKYFKEKDFIKCPYEHALYI 179



 Score = 82.0 bits (201), Expect(2) = 2e-42
 Identities = 38/63 (60%), Positives = 47/63 (74%)
 Frame = +1

Query: 283 EAFQDPKWLNAMNEEIKAIEKNNTWELTKIP*GQKAIDVKWVFKT*LKSNGEVERHKARI 462
           EA +   W NAM+EEIKAI+KN+TWEL  +P G KAI VKWV+K    S GEVER+KAR+
Sbjct: 4   EAIEKNTWRNAMDEEIKAIKKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKARL 63

Query: 463 IGK 471
           + K
Sbjct: 64  VAK 66


>gb|AGH20678.1| reverse transcriptase, partial [Olimarabidopsis cabulica]
          Length = 315

 Score =  116 bits (290), Expect(2) = 3e-42
 Identities = 52/82 (63%), Positives = 65/82 (79%)
 Frame = +3

Query: 456 KNHWKIHQMEVK*AFLNGQLEEDVFVKQLSGFIKKGNEDKVYKLKKALYGLKRAPRAWNK 635
           +N WKIHQM+VK AFLNG LEE+V+++Q  G+I KG E KV KLKKALYGLK+APRAWN 
Sbjct: 98  QNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEAKVLKLKKALYGLKQAPRAWNT 157

Query: 636 RIDSFFHRTRFKKCSFDHAIYV 701
           RID +F    F KC ++HA+Y+
Sbjct: 158 RIDKYFKEKDFIKCPYEHALYI 179



 Score = 82.8 bits (203), Expect(2) = 3e-42
 Identities = 38/63 (60%), Positives = 47/63 (74%)
 Frame = +1

Query: 283 EAFQDPKWLNAMNEEIKAIEKNNTWELTKIP*GQKAIDVKWVFKT*LKSNGEVERHKARI 462
           EA +   W NAM+EEI AI+KN+TWEL  +P GQKAI VKWV+K    S GEVER+KAR+
Sbjct: 4   EAMEKKTWRNAMDEEINAIQKNDTWELVSLPNGQKAIGVKWVYKAKKNSKGEVERYKARL 63

Query: 463 IGK 471
           + K
Sbjct: 64  VAK 66


>gb|AGH20673.1| reverse transcriptase, partial [Crucihimalaya wallichii]
          Length = 315

 Score =  118 bits (296), Expect(2) = 4e-42
 Identities = 51/83 (61%), Positives = 67/83 (80%)
 Frame = +3

Query: 453 SKNHWKIHQMEVK*AFLNGQLEEDVFVKQLSGFIKKGNEDKVYKLKKALYGLKRAPRAWN 632
           ++N WKIHQM+VK AFLNG LEE+V+++Q  G+I KG EDKV +LKK LYGLK+APRAWN
Sbjct: 97  AQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKTLYGLKQAPRAWN 156

Query: 633 KRIDSFFHRTRFKKCSFDHAIYV 701
            RID +F   +F KC ++HA+Y+
Sbjct: 157 TRIDKYFKEKKFIKCPYEHALYI 179



 Score = 80.1 bits (196), Expect(2) = 4e-42
 Identities = 37/63 (58%), Positives = 46/63 (73%)
 Frame = +1

Query: 283 EAFQDPKWLNAMNEEIKAIEKNNTWELTKIP*GQKAIDVKWVFKT*LKSNGEVERHKARI 462
           EA +   W  AM+EEIKAI+KN+TWEL  +P G KAI VKWV+K    S GEVER+KAR+
Sbjct: 4   EAIEKKTWRKAMDEEIKAIQKNDTWELATLPNGHKAIGVKWVYKAKKNSKGEVERYKARL 63

Query: 463 IGK 471
           + K
Sbjct: 64  VAK 66


>gb|AGH20671.1| reverse transcriptase, partial [Thlaspi arvense]
          Length = 315

 Score =  118 bits (295), Expect(2) = 6e-42
 Identities = 51/83 (61%), Positives = 67/83 (80%)
 Frame = +3

Query: 453 SKNHWKIHQMEVK*AFLNGQLEEDVFVKQLSGFIKKGNEDKVYKLKKALYGLKRAPRAWN 632
           ++N W+IHQM+VK AFLNG LEE+V+++Q  G+I KG EDKV +LKKALYGLK+APRAWN
Sbjct: 97  AQNRWRIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGKEDKVLRLKKALYGLKQAPRAWN 156

Query: 633 KRIDSFFHRTRFKKCSFDHAIYV 701
            RID +F    F KC ++HA+Y+
Sbjct: 157 TRIDKYFKEKSFIKCPYEHALYI 179



 Score = 79.7 bits (195), Expect(2) = 6e-42
 Identities = 36/63 (57%), Positives = 45/63 (71%)
 Frame = +1

Query: 283 EAFQDPKWLNAMNEEIKAIEKNNTWELTKIP*GQKAIDVKWVFKT*LKSNGEVERHKARI 462
           EA +   W N M+EEIK+I+KN TWEL  +P G KAI VKWV+K    S GEVER+KAR+
Sbjct: 4   EAMEKKTWRNTMDEEIKSIQKNETWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKARL 63

Query: 463 IGK 471
           + K
Sbjct: 64  VAK 66


>gb|AGH20676.1| reverse transcriptase, partial [Olimarabidopsis cabulica]
          Length = 315

 Score =  115 bits (289), Expect(2) = 6e-42
 Identities = 52/83 (62%), Positives = 66/83 (79%)
 Frame = +3

Query: 453 SKNHWKIHQMEVK*AFLNGQLEEDVFVKQLSGFIKKGNEDKVYKLKKALYGLKRAPRAWN 632
           ++N WKIHQM+VK AFLNG LEE+V+++Q  G+I KG E KV KLKKALYGLK+APRAWN
Sbjct: 97  AQNVWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEAKVLKLKKALYGLKQAPRAWN 156

Query: 633 KRIDSFFHRTRFKKCSFDHAIYV 701
            RID +F    F KC ++HA+Y+
Sbjct: 157 TRIDKYFKEQDFIKCPYEHALYI 179



 Score = 82.0 bits (201), Expect(2) = 6e-42
 Identities = 39/63 (61%), Positives = 45/63 (71%)
 Frame = +1

Query: 283 EAFQDPKWLNAMNEEIKAIEKNNTWELTKIP*GQKAIDVKWVFKT*LKSNGEVERHKARI 462
           EA     W NAM+EEIKAI KN+TWEL  +P G KAI VKWV+K    S GEVERHKAR+
Sbjct: 4   EAAVKKTWRNAMDEEIKAIRKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERHKARL 63

Query: 463 IGK 471
           + K
Sbjct: 64  VAK 66


>gb|AGH20667.1| reverse transcriptase, partial [Arabis hirsuta]
          Length = 315

 Score =  114 bits (284), Expect(2) = 6e-42
 Identities = 48/83 (57%), Positives = 66/83 (79%)
 Frame = +3

Query: 453 SKNHWKIHQMEVK*AFLNGQLEEDVFVKQLSGFIKKGNEDKVYKLKKALYGLKRAPRAWN 632
           ++N+W+IHQM+VK  FLNG LEE+V+++Q  G+I KG E+KV +LKKALYGLK+APR WN
Sbjct: 97  AQNNWRIHQMDVKSTFLNGDLEEEVYIEQPQGYIVKGEENKVLRLKKALYGLKKAPRGWN 156

Query: 633 KRIDSFFHRTRFKKCSFDHAIYV 701
            RID +F    F KC ++HA+Y+
Sbjct: 157 TRIDKYFKAKNFIKCPYEHALYI 179



 Score = 84.0 bits (206), Expect(2) = 6e-42
 Identities = 38/63 (60%), Positives = 48/63 (76%)
 Frame = +1

Query: 283 EAFQDPKWLNAMNEEIKAIEKNNTWELTKIP*GQKAIDVKWVFKT*LKSNGEVERHKARI 462
           EA ++  W NAM+EEIKAI+KN+TWEL  +P G KAI VKWV+K    S GEVER+KAR+
Sbjct: 4   EAMEEKTWRNAMDEEIKAIQKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKARL 63

Query: 463 IGK 471
           + K
Sbjct: 64  VAK 66


>gb|AFK88553.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  117 bits (293), Expect(2) = 8e-42
 Identities = 51/83 (61%), Positives = 68/83 (81%)
 Frame = +3

Query: 453 SKNHWKIHQMEVK*AFLNGQLEEDVFVKQLSGFIKKGNEDKVYKLKKALYGLKRAPRAWN 632
           ++N WKIHQM+VK AFLNG LEE+V+++Q  G+I KG EDKV +LKKALYGLK+APRAWN
Sbjct: 97  AQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWN 156

Query: 633 KRIDSFFHRTRFKKCSFDHAIYV 701
            RI+ +F +  F KC ++HA+Y+
Sbjct: 157 TRINKYFKKKDFIKCPYEHALYI 179



 Score = 80.1 bits (196), Expect(2) = 8e-42
 Identities = 37/63 (58%), Positives = 46/63 (73%)
 Frame = +1

Query: 283 EAFQDPKWLNAMNEEIKAIEKNNTWELTKIP*GQKAIDVKWVFKT*LKSNGEVERHKARI 462
           EA +   W NA +EEIKAI+KN+TWEL  +P G KAI VKWV+K    S GEVER+KAR+
Sbjct: 4   EAIEKKTWRNATDEEIKAIKKNDTWELASLPNGHKAIGVKWVYKAKKNSKGEVERYKARL 63

Query: 463 IGK 471
           + K
Sbjct: 64  VAK 66