BLASTX nr result
ID: Cocculus23_contig00038026
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00038026
(320 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_008081515.1| hypothetical chloroplast RF1 (chloroplast) [... 65 7e-09
ref|YP_008081424.1| hypothetical chloroplast RF1 (chloroplast) [... 58 1e-06
ref|YP_001294243.1| hypothetical chloroplast RF1 [Buxus microphy... 56 6e-06
ref|YP_762318.1| hypothetical chloroplast RF1 [Morus indica] gi|... 56 6e-06
ref|YP_009026939.1| photosystem I assembly protein Ycf1 [Magnoli... 55 8e-06
gb|AEX98809.1| photosystem I assembly protein Ycf1-like protein ... 55 8e-06
gb|AEX98725.1| photosystem I assembly protein Ycf1 (chloroplast)... 55 8e-06
ref|YP_007474509.1| photosystem I assembly protein Ycf1 (chlorop... 55 8e-06
ref|YP_007474425.1| hypothetical chloroplast RF1 (chloroplast) [... 55 8e-06
gb|ADD30912.1| putative RF1 protein [Ximenia americana] 55 8e-06
ref|YP_008577891.1| hypothetical chloroplast RF1 (chloroplast) [... 55 1e-05
ref|YP_008577806.1| hypothetical chloroplast RF1 (chloroplast) [... 55 1e-05
ref|YP_008577721.1| hypothetical chloroplast RF1 (chloroplast) [... 55 1e-05
ref|YP_008577636.1| hypothetical chloroplast RF1 (chloroplast) [... 55 1e-05
>ref|YP_008081515.1| hypothetical chloroplast RF1 (chloroplast) [Trochodendron aralioides]
gi|290489080|gb|ADD30924.1| putative RF1 protein
[Trochodendron aralioides] gi|479279354|gb|AGJ72207.1|
hypothetical chloroplast RF1 (chloroplast) [Trochodendron
aralioides]
Length = 1896
Score = 65.5 bits (158), Expect = 7e-09
Identities = 30/52 (57%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Frame = +1
Query: 133 WRILNFCLRKETILRV-TNMDIGTNINQNTKSEVNCYQITDKMDHKDLVYLV 285
WRIL+FCLRK+ +R TN+D G N+N+NTK+ N YQI DK+DHKD L+
Sbjct: 1432 WRILHFCLRKKVDIRAWTNIDTGANVNRNTKAGTNYYQIIDKIDHKDTFSLM 1483
>ref|YP_008081424.1| hypothetical chloroplast RF1 (chloroplast) [Tetracentron sinense]
gi|479279261|gb|AGJ72115.1| hypothetical chloroplast RF1
(chloroplast) [Tetracentron sinense]
Length = 1895
Score = 58.2 bits (139), Expect = 1e-06
Identities = 27/52 (51%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Frame = +1
Query: 133 WRILNFCLRKETILRV-TNMDIGTNINQNTKSEVNCYQITDKMDHKDLVYLV 285
WRIL+FCLRK+ +R T++D G ++N+NTK+ N YQI DK+D KD L+
Sbjct: 1436 WRILHFCLRKKVDIRAWTDIDTGADVNRNTKTGTNYYQIIDKIDKKDTFSLM 1487
>ref|YP_001294243.1| hypothetical chloroplast RF1 [Buxus microphylla]
gi|182702240|sp|A6MM95.1|YCF1_BUXMI RecName:
Full=Putative membrane protein ycf1; Short=RF1
gi|146762344|gb|ABQ45308.1| hypothetical chloroplast RF1
[Buxus microphylla]
Length = 1859
Score = 55.8 bits (133), Expect = 6e-06
Identities = 28/51 (54%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Frame = +1
Query: 133 WRILNFCLRKETILRV-TNMDIGTNINQNTKSEVNCYQITDKMDHKDLVYL 282
W ILNFCLRK+ + T++D G +IN+NTK+ N YQI DK+D K L YL
Sbjct: 1403 WIILNFCLRKKLDIEAWTDIDTGDSINKNTKTGTNNYQIIDKIDKKYLFYL 1453
>ref|YP_762318.1| hypothetical chloroplast RF1 [Morus indica]
gi|118574756|sp|Q09WW0.1|YCF1_MORIN RecName:
Full=Putative membrane protein ycf1; Short=RF1
gi|78100373|gb|ABB21014.1| hypothetical chloroplast RF1
[Morus indica]
Length = 1879
Score = 55.8 bits (133), Expect = 6e-06
Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +1
Query: 133 WRILNFCLRKETILRV-TNMDIGTNINQNTKSEVNCYQITDKMDHKDLVY 279
W ILNFCLRK+ +R NMD N N+ TK N YQI DK+D+KDL Y
Sbjct: 1412 WIILNFCLRKKMDIRAWINMDTDANSNKYTKPRANNYQIIDKIDNKDLFY 1461
>ref|YP_009026939.1| photosystem I assembly protein Ycf1 [Magnolia tripetala]
gi|608608461|gb|AHW52015.1| photosystem I assembly
protein Ycf1 [Magnolia tripetala]
Length = 1846
Score = 55.5 bits (132), Expect = 8e-06
Identities = 30/51 (58%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Frame = +1
Query: 133 WRILNFCLRKETILRV-TNMDIGTNINQNTKSEVNCYQITDKMDHKDLVYL 282
WRILNF LRK + + T++D GTNIN+NTK+ N YQI DK KDL YL
Sbjct: 1400 WRILNFFLRKNIDIEIWTDIDTGTNINKNTKTGTNDYQIIDK---KDLFYL 1447
>gb|AEX98809.1| photosystem I assembly protein Ycf1-like protein (chloroplast)
[Magnolia officinalis subsp. biloba]
Length = 1863
Score = 55.5 bits (132), Expect = 8e-06
Identities = 30/51 (58%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Frame = +1
Query: 133 WRILNFCLRKETILRV-TNMDIGTNINQNTKSEVNCYQITDKMDHKDLVYL 282
WRILNF LRK + + T++D GTNIN+NTK+ N YQI DK KDL YL
Sbjct: 1418 WRILNFFLRKNIDIEIWTDIDTGTNINKNTKTGTNDYQIIDK---KDLFYL 1465
>gb|AEX98725.1| photosystem I assembly protein Ycf1 (chloroplast) [Magnolia
officinalis subsp. biloba]
Length = 1863
Score = 55.5 bits (132), Expect = 8e-06
Identities = 30/51 (58%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Frame = +1
Query: 133 WRILNFCLRKETILRV-TNMDIGTNINQNTKSEVNCYQITDKMDHKDLVYL 282
WRILNF LRK + + T++D GTNIN+NTK+ N YQI DK KDL YL
Sbjct: 1418 WRILNFFLRKNIDIEIWTDIDTGTNINKNTKTGTNDYQIIDK---KDLFYL 1465
>ref|YP_007474509.1| photosystem I assembly protein Ycf1 (chloroplast) [Magnolia
officinalis subsp. biloba] gi|372862561|gb|AEX98641.1|
photosystem I assembly protein Ycf1 (chloroplast)
[Magnolia officinalis subsp. biloba]
Length = 1863
Score = 55.5 bits (132), Expect = 8e-06
Identities = 30/51 (58%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Frame = +1
Query: 133 WRILNFCLRKETILRV-TNMDIGTNINQNTKSEVNCYQITDKMDHKDLVYL 282
WRILNF LRK + + T++D GTNIN+NTK+ N YQI DK KDL YL
Sbjct: 1418 WRILNFFLRKNIDIEIWTDIDTGTNINKNTKTGTNDYQIIDK---KDLFYL 1465
>ref|YP_007474425.1| hypothetical chloroplast RF1 (chloroplast) [Magnolia officinalis]
gi|372862476|gb|AEX98557.1| hypothetical chloroplast RF1
(chloroplast) [Magnolia officinalis]
Length = 1863
Score = 55.5 bits (132), Expect = 8e-06
Identities = 30/51 (58%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Frame = +1
Query: 133 WRILNFCLRKETILRV-TNMDIGTNINQNTKSEVNCYQITDKMDHKDLVYL 282
WRILNF LRK + + T++D GTNIN+NTK+ N YQI DK KDL YL
Sbjct: 1418 WRILNFFLRKNIDIEIWTDIDTGTNINKNTKTGTNDYQIIDK---KDLFYL 1465
>gb|ADD30912.1| putative RF1 protein [Ximenia americana]
Length = 1895
Score = 55.5 bits (132), Expect = 8e-06
Identities = 27/50 (54%), Positives = 36/50 (72%)
Frame = +1
Query: 133 WRILNFCLRKETILRVTNMDIGTNINQNTKSEVNCYQITDKMDHKDLVYL 282
WRI++FCLRK+ + + +DI TN N+NTK+ N YQI DK+D K L YL
Sbjct: 1441 WRIIHFCLRKKVDIE-SWIDIDTNSNKNTKTGTNNYQIIDKIDKKSLFYL 1489
>ref|YP_008577891.1| hypothetical chloroplast RF1 (chloroplast) [Corymbia tessellaris]
gi|442569135|gb|AGC59300.1| hypothetical chloroplast RF1
(chloroplast) [Corymbia tessellaris]
Length = 1889
Score = 55.1 bits (131), Expect = 1e-05
Identities = 28/50 (56%), Positives = 35/50 (70%)
Frame = +1
Query: 133 WRILNFCLRKETILRVTNMDIGTNINQNTKSEVNCYQITDKMDHKDLVYL 282
WRI +FCLR + + + +DI TN N+NTK+ VN YQI DKMD K L YL
Sbjct: 1431 WRIFDFCLRNKVNIE-SWIDIDTNGNKNTKTGVNNYQIIDKMDQKGLFYL 1479
>ref|YP_008577806.1| hypothetical chloroplast RF1 (chloroplast) [Corymbia eximia]
gi|442569049|gb|AGC59215.1| hypothetical chloroplast RF1
(chloroplast) [Corymbia eximia]
Length = 1889
Score = 55.1 bits (131), Expect = 1e-05
Identities = 28/50 (56%), Positives = 35/50 (70%)
Frame = +1
Query: 133 WRILNFCLRKETILRVTNMDIGTNINQNTKSEVNCYQITDKMDHKDLVYL 282
WRI +FCLR + + + +DI TN N+NTK+ VN YQI DKMD K L YL
Sbjct: 1431 WRIFDFCLRNKVNIE-SWIDIDTNGNKNTKTGVNNYQIIDKMDQKGLFYL 1479
>ref|YP_008577721.1| hypothetical chloroplast RF1 (chloroplast) [Corymbia maculata]
gi|442568963|gb|AGC59130.1| hypothetical chloroplast RF1
(chloroplast) [Corymbia maculata]
Length = 1889
Score = 55.1 bits (131), Expect = 1e-05
Identities = 28/50 (56%), Positives = 35/50 (70%)
Frame = +1
Query: 133 WRILNFCLRKETILRVTNMDIGTNINQNTKSEVNCYQITDKMDHKDLVYL 282
WRI +FCLR + + + +DI TN N+NTK+ VN YQI DKMD K L YL
Sbjct: 1431 WRIFDFCLRNKVNIE-SWIDIDTNGNKNTKTGVNNYQIIDKMDQKGLFYL 1479
>ref|YP_008577636.1| hypothetical chloroplast RF1 (chloroplast) [Corymbia gummifera]
gi|442568877|gb|AGC59045.1| hypothetical chloroplast RF1
(chloroplast) [Corymbia gummifera]
Length = 1851
Score = 55.1 bits (131), Expect = 1e-05
Identities = 28/50 (56%), Positives = 35/50 (70%)
Frame = +1
Query: 133 WRILNFCLRKETILRVTNMDIGTNINQNTKSEVNCYQITDKMDHKDLVYL 282
WRI +FCLR + + + +DI TN N+NTK+ VN YQI DKMD K L YL
Sbjct: 1425 WRIFDFCLRNKVNIE-SWIDIDTNGNKNTKTGVNNYQIIDKMDQKGLFYL 1473