BLASTX nr result
ID: Cocculus23_contig00038015
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00038015
(337 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI30094.3| unnamed protein product [Vitis vinifera] 102 4e-20
ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containi... 102 4e-20
gb|EXB41187.1| hypothetical protein L484_005223 [Morus notabilis] 101 9e-20
ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 100 2e-19
ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containi... 100 2e-19
ref|XP_007204422.1| hypothetical protein PRUPE_ppb002215mg [Prun... 100 4e-19
ref|XP_004308620.1| PREDICTED: pentatricopeptide repeat-containi... 97 3e-18
ref|XP_002529164.1| pentatricopeptide repeat-containing protein,... 86 7e-15
ref|XP_007028547.1| Pentatricopeptide repeat (PPR) superfamily p... 85 1e-14
ref|XP_006340092.1| PREDICTED: pentatricopeptide repeat-containi... 82 6e-14
ref|XP_006296159.1| hypothetical protein CARUB_v10025312mg [Caps... 77 2e-12
ref|XP_004237347.1| PREDICTED: pentatricopeptide repeat-containi... 77 2e-12
ref|XP_002881370.1| pentatricopeptide repeat-containing protein ... 73 5e-11
ref|XP_006410659.1| hypothetical protein EUTSA_v10016379mg [Eutr... 70 2e-10
ref|XP_004498123.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 69 5e-10
ref|NP_181048.1| pentatricopeptide repeat-containing protein [Ar... 69 5e-10
ref|XP_003589755.1| Pentatricopeptide repeat-containing protein ... 69 9e-10
ref|XP_006587960.1| PREDICTED: pentatricopeptide repeat-containi... 65 1e-08
ref|XP_007161435.1| hypothetical protein PHAVU_001G068400g [Phas... 65 1e-08
ref|XP_007047867.1| Tetratricopeptide repeat-like superfamily pr... 64 3e-08
>emb|CBI30094.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 102 bits (255), Expect = 4e-20
Identities = 49/91 (53%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
Frame = +1
Query: 70 VPSLFKLHATWLQEYRLYHFTN--RPTKISTSERDYSINQNVARSNWLITKLSRDGKIGE 243
+P+L L + + LYH N R KIS +D++++ NVAR NW+IT LS+DG+I E
Sbjct: 26 IPALINLKLLRIPGFYLYHSINDYRTAKISIPRKDFTVDGNVARCNWMITNLSKDGRIME 85
Query: 244 ARQLFDRMPERDVVTWTTVISGYIKCGLMRE 336
AR+LFD M E DV+TWTTVISGYIKCG++ E
Sbjct: 86 ARRLFDEMREPDVITWTTVISGYIKCGMIEE 116
>ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 102 bits (255), Expect = 4e-20
Identities = 49/91 (53%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
Frame = +1
Query: 70 VPSLFKLHATWLQEYRLYHFTN--RPTKISTSERDYSINQNVARSNWLITKLSRDGKIGE 243
+P+L L + + LYH N R KIS +D++++ NVAR NW+IT LS+DG+I E
Sbjct: 11 IPALINLKLLRIPGFYLYHSINDYRTAKISIPRKDFTVDGNVARCNWMITNLSKDGRIME 70
Query: 244 ARQLFDRMPERDVVTWTTVISGYIKCGLMRE 336
AR+LFD M E DV+TWTTVISGYIKCG++ E
Sbjct: 71 ARRLFDEMREPDVITWTTVISGYIKCGMIEE 101
Score = 55.8 bits (133), Expect = 6e-06
Identities = 26/52 (50%), Positives = 39/52 (75%)
Frame = +1
Query: 181 QNVARSNWLITKLSRDGKIGEARQLFDRMPERDVVTWTTVISGYIKCGLMRE 336
+NV N +++ L++ G+I EAR+LFDRMPERDV++WT +I+G K G + E
Sbjct: 175 RNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDE 226
>gb|EXB41187.1| hypothetical protein L484_005223 [Morus notabilis]
Length = 622
Score = 101 bits (252), Expect = 9e-20
Identities = 47/86 (54%), Positives = 64/86 (74%)
Frame = +1
Query: 79 LFKLHATWLQEYRLYHFTNRPTKISTSERDYSINQNVARSNWLITKLSRDGKIGEARQLF 258
LF ++ + L + + H N KI ERDYS+N VARSNW +TKLS+ G+IG+ARQ+F
Sbjct: 9 LFSIYNSRLLCHPIKH--NNAPKILLLERDYSVNSGVARSNWWLTKLSKSGRIGDARQVF 66
Query: 259 DRMPERDVVTWTTVISGYIKCGLMRE 336
D MP+RDV+TWTTVI+GY +CG++ E
Sbjct: 67 DEMPDRDVITWTTVITGYARCGMIEE 92
Score = 58.9 bits (141), Expect = 7e-07
Identities = 28/71 (39%), Positives = 45/71 (63%)
Frame = +1
Query: 124 HFTNRPTKISTSERDYSINQNVARSNWLITKLSRDGKIGEARQLFDRMPERDVVTWTTVI 303
+F N + D +NV N +IT L++ G++ EAR+LFD MPERDV++WTT++
Sbjct: 147 YFQNGRVNSALGLFDRMPERNVVSWNTIITALAQSGRMEEARRLFDMMPERDVISWTTMV 206
Query: 304 SGYIKCGLMRE 336
+G+ + G + E
Sbjct: 207 AGFSRNGRIDE 217
>ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35030, mitochondrial-like [Cucumis sativus]
Length = 649
Score = 100 bits (249), Expect = 2e-19
Identities = 44/64 (68%), Positives = 56/64 (87%)
Frame = +1
Query: 145 KISTSERDYSINQNVARSNWLITKLSRDGKIGEARQLFDRMPERDVVTWTTVISGYIKCG 324
KIS+ RD+S N NVARSNWLIT+L ++GKIGEARQ+F+ MP+RDVV+WT VI+GYIKCG
Sbjct: 52 KISSPVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCG 111
Query: 325 LMRE 336
++ E
Sbjct: 112 MIEE 115
>ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Cucumis sativus]
Length = 649
Score = 100 bits (249), Expect = 2e-19
Identities = 44/64 (68%), Positives = 56/64 (87%)
Frame = +1
Query: 145 KISTSERDYSINQNVARSNWLITKLSRDGKIGEARQLFDRMPERDVVTWTTVISGYIKCG 324
KIS+ RD+S N NVARSNWLIT+L ++GKIGEARQ+F+ MP+RDVV+WT VI+GYIKCG
Sbjct: 52 KISSPVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCG 111
Query: 325 LMRE 336
++ E
Sbjct: 112 MIEE 115
>ref|XP_007204422.1| hypothetical protein PRUPE_ppb002215mg [Prunus persica]
gi|462399953|gb|EMJ05621.1| hypothetical protein
PRUPE_ppb002215mg [Prunus persica]
Length = 634
Score = 99.8 bits (247), Expect = 4e-19
Identities = 46/75 (61%), Positives = 61/75 (81%), Gaps = 2/75 (2%)
Frame = +1
Query: 118 LYHFTNRPT--KISTSERDYSINQNVARSNWLITKLSRDGKIGEARQLFDRMPERDVVTW 291
LYH N +I++ +RD+S + NVA+SNWLIT+LS+DGK EARQ+FD MP++DVVTW
Sbjct: 28 LYHSMNYTVTPRITSPDRDFSASFNVAQSNWLITRLSKDGKFREARQVFDGMPDKDVVTW 87
Query: 292 TTVISGYIKCGLMRE 336
TTVI+GYI+CG+M E
Sbjct: 88 TTVITGYIRCGMMEE 102
>ref|XP_004308620.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Fragaria vesca subsp. vesca]
Length = 714
Score = 96.7 bits (239), Expect = 3e-18
Identities = 43/64 (67%), Positives = 55/64 (85%)
Frame = +1
Query: 145 KISTSERDYSINQNVARSNWLITKLSRDGKIGEARQLFDRMPERDVVTWTTVISGYIKCG 324
+I+T RD+S + +VA+SNWLITKLSRDG+I EARQ+FD MPERDVVTWTTVI+ Y+K G
Sbjct: 36 RITTPHRDHSASSDVAKSNWLITKLSRDGRIREARQVFDEMPERDVVTWTTVITAYVKSG 95
Query: 325 LMRE 336
++ E
Sbjct: 96 MLEE 99
>ref|XP_002529164.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223531388|gb|EEF33223.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 453
Score = 85.5 bits (210), Expect = 7e-15
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = +1
Query: 145 KISTSERDYSINQNVARSNWLITKLSRDGKIGEARQLFDRMPERDVVTWTTVISGYIKCG 324
+IS + +S + VAR NW ITKL R+GKI EARQ+FDRM ERDV+TWTTVI+GYIKC
Sbjct: 41 RISLPDGHHSASSEVARFNWHITKLCREGKINEARQVFDRMLERDVITWTTVITGYIKCR 100
Query: 325 LMRE 336
L+ E
Sbjct: 101 LIVE 104
>ref|XP_007028547.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
isoform 1 [Theobroma cacao]
gi|590635100|ref|XP_007028548.1| Pentatricopeptide
repeat (PPR) superfamily protein, putative isoform 1
[Theobroma cacao] gi|508717152|gb|EOY09049.1|
Pentatricopeptide repeat (PPR) superfamily protein,
putative isoform 1 [Theobroma cacao]
gi|508717153|gb|EOY09050.1| Pentatricopeptide repeat
(PPR) superfamily protein, putative isoform 1 [Theobroma
cacao]
Length = 631
Score = 84.7 bits (208), Expect = 1e-14
Identities = 47/109 (43%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Frame = +1
Query: 16 LTIRNSCLSRTVLRSIKVVPSLFKLHATWLQEYRLYHFTNRPTKISTSERDYSINQNVAR 195
L I + +S + ++ SL LH+ +K + DYS N +VA+
Sbjct: 2 LVIPRASISFRYFNKLTILLSLNALHSV-------------KSKTTIPSIDYSANSSVAQ 48
Query: 196 SNWLITKLSRDGKIGEARQLFDRMPER--DVVTWTTVISGYIKCGLMRE 336
SNWLITKLS +GKI + R+LFD+MP+R DV+TWT +ISGYIK GL+ E
Sbjct: 49 SNWLITKLSTEGKISQVRKLFDQMPDRDKDVITWTALISGYIKLGLIEE 97
>ref|XP_006340092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Solanum tuberosum]
Length = 641
Score = 82.4 bits (202), Expect = 6e-14
Identities = 45/89 (50%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
Frame = +1
Query: 64 KVVPSLFKLHATWLQEYRLYHFTNRPTK-ISTSER-DYSINQNVARSNWLITKLSRDGKI 237
K S+FKL HF N+P K S R DY+ NQ+V+RSN +I+KLS++G++
Sbjct: 16 KFCKSVFKLQTK-------LHFINQPIKHYSLLPRVDYTCNQDVSRSNRIISKLSKEGQV 68
Query: 238 GEARQLFDRMPERDVVTWTTVISGYIKCG 324
EAR+LFD+M E DVV+WT +ISGYI+CG
Sbjct: 69 DEARKLFDKMSEPDVVSWTAMISGYIRCG 97
Score = 55.8 bits (133), Expect = 6e-06
Identities = 26/52 (50%), Positives = 39/52 (75%)
Frame = +1
Query: 181 QNVARSNWLITKLSRDGKIGEARQLFDRMPERDVVTWTTVISGYIKCGLMRE 336
+NV N +I L+R+G+I EAR LFD+MPE++VV+WTT+I+G + G + E
Sbjct: 175 RNVVSWNMVIAGLARNGRINEARVLFDQMPEKNVVSWTTMIAGLSRNGRVDE 226
>ref|XP_006296159.1| hypothetical protein CARUB_v10025312mg [Capsella rubella]
gi|482564867|gb|EOA29057.1| hypothetical protein
CARUB_v10025312mg [Capsella rubella]
Length = 636
Score = 77.4 bits (189), Expect = 2e-12
Identities = 37/56 (66%), Positives = 43/56 (76%)
Frame = +1
Query: 169 YSINQNVARSNWLITKLSRDGKIGEARQLFDRMPERDVVTWTTVISGYIKCGLMRE 336
YS N V R WLI +L R+G+I EAR+LFD +PERDVVTWT VI+GYIK G MRE
Sbjct: 49 YSSNSRVPRPEWLIGELCREGRIVEARKLFDGLPERDVVTWTDVITGYIKLGNMRE 104
>ref|XP_004237347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Solanum lycopersicum]
Length = 624
Score = 77.4 bits (189), Expect = 2e-12
Identities = 33/53 (62%), Positives = 47/53 (88%)
Frame = +1
Query: 166 DYSINQNVARSNWLITKLSRDGKIGEARQLFDRMPERDVVTWTTVISGYIKCG 324
DY+ NQ+V+RSN +I+KLS++G++ EAR+LFD+M E DVV+WT +ISGYI+CG
Sbjct: 45 DYTCNQDVSRSNRIISKLSKEGQVDEARKLFDKMSEPDVVSWTAMISGYIRCG 97
>ref|XP_002881370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297327209|gb|EFH57629.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 627
Score = 72.8 bits (177), Expect = 5e-11
Identities = 41/90 (45%), Positives = 50/90 (55%), Gaps = 12/90 (13%)
Frame = +1
Query: 103 LQEYRLYHFTNRPTKISTSERDYSINQ------------NVARSNWLITKLSRDGKIGEA 246
L R Y+ + IS +ER + V R WLI KL + GK+ EA
Sbjct: 6 LSRLRSYYRRSSVIPISDNERSVQLRNLVRSIYSSSSKPRVPRPEWLIGKLCKVGKLAEA 65
Query: 247 RQLFDRMPERDVVTWTTVISGYIKCGLMRE 336
R+LFD +PERDVVTWT VI+GYIK G MRE
Sbjct: 66 RKLFDGLPERDVVTWTDVITGYIKLGNMRE 95
>ref|XP_006410659.1| hypothetical protein EUTSA_v10016379mg [Eutrema salsugineum]
gi|557111828|gb|ESQ52112.1| hypothetical protein
EUTSA_v10016379mg [Eutrema salsugineum]
Length = 626
Score = 70.5 bits (171), Expect = 2e-10
Identities = 31/55 (56%), Positives = 41/55 (74%)
Frame = +1
Query: 172 SINQNVARSNWLITKLSRDGKIGEARQLFDRMPERDVVTWTTVISGYIKCGLMRE 336
S + + R WLI KL ++G+I EAR++FDR+P+RD TWT VI+GYIK G MRE
Sbjct: 40 SSHSRIPRPEWLIKKLCKEGRIAEARKVFDRLPQRDEYTWTDVITGYIKLGNMRE 94
>ref|XP_004498123.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35030, mitochondrial-like [Cicer arietinum]
Length = 665
Score = 69.3 bits (168), Expect = 5e-10
Identities = 30/55 (54%), Positives = 42/55 (76%)
Frame = +1
Query: 172 SINQNVARSNWLITKLSRDGKIGEARQLFDRMPERDVVTWTTVISGYIKCGLMRE 336
SI+ + R N+ I+ L + GKI EAR++FD M ERD+ WTT+ISGYIKCG+++E
Sbjct: 44 SISLEMKRCNFFISSLCKQGKIDEARKVFDEMSERDICLWTTMISGYIKCGMIKE 98
>ref|NP_181048.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099187|sp|O64766.1|PP185_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g35030, mitochondrial; Flags: Precursor
gi|3033399|gb|AAC12843.1| hypothetical protein
[Arabidopsis thaliana] gi|209414526|gb|ACI46503.1|
At2g35030 [Arabidopsis thaliana]
gi|330253957|gb|AEC09051.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 627
Score = 69.3 bits (168), Expect = 5e-10
Identities = 41/88 (46%), Positives = 52/88 (59%), Gaps = 14/88 (15%)
Frame = +1
Query: 115 RLYHFTNRPTKISTSERDYSINQ-NVARS-------------NWLITKLSRDGKIGEARQ 252
RL + R + +S+ D S+ N+ RS WLI +L + GKI EAR+
Sbjct: 8 RLRSYYKRSSVFPSSDNDRSVQLFNLVRSIYSSSSRPRVPQPEWLIGELCKVGKIAEARK 67
Query: 253 LFDRMPERDVVTWTTVISGYIKCGLMRE 336
LFD +PERDVVTWT VI+GYIK G MRE
Sbjct: 68 LFDGLPERDVVTWTHVITGYIKLGDMRE 95
>ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478803|gb|AES60006.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 891
Score = 68.6 bits (166), Expect = 9e-10
Identities = 29/55 (52%), Positives = 41/55 (74%)
Frame = +1
Query: 172 SINQNVARSNWLITKLSRDGKIGEARQLFDRMPERDVVTWTTVISGYIKCGLMRE 336
++ + R N+ I+KL R+GK+ EAR++FD M +RD WTT+ISGYIKCGL+ E
Sbjct: 40 TLTSEMKRCNYFISKLCREGKVNEARKVFDEMSKRDSCLWTTMISGYIKCGLINE 94
>ref|XP_006587960.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like isoform X2 [Glycine max]
gi|571479769|ref|XP_006587961.1| PREDICTED:
pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like isoform X3 [Glycine max]
gi|571479771|ref|XP_003533693.2| PREDICTED:
pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like isoform X1 [Glycine max]
Length = 618
Score = 65.1 bits (157), Expect = 1e-08
Identities = 26/55 (47%), Positives = 43/55 (78%)
Frame = +1
Query: 172 SINQNVARSNWLITKLSRDGKIGEARQLFDRMPERDVVTWTTVISGYIKCGLMRE 336
+++ + R N I++L R+G+I AR++F+ MPERD+ WTT+I+GY+KCG++RE
Sbjct: 33 NLHTEMKRCNLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIRE 87
>ref|XP_007161435.1| hypothetical protein PHAVU_001G068400g [Phaseolus vulgaris]
gi|561034899|gb|ESW33429.1| hypothetical protein
PHAVU_001G068400g [Phaseolus vulgaris]
Length = 616
Score = 64.7 bits (156), Expect = 1e-08
Identities = 28/55 (50%), Positives = 42/55 (76%)
Frame = +1
Query: 172 SINQNVARSNWLITKLSRDGKIGEARQLFDRMPERDVVTWTTVISGYIKCGLMRE 336
S + + R N LI +L DGKI +AR++FD+M +RD+ WTT+I+GY+KCG++RE
Sbjct: 30 SNHPEMKRCNLLIFRLCEDGKIDDARKVFDKMLDRDIGLWTTMINGYLKCGMIRE 84
>ref|XP_007047867.1| Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
gi|508700128|gb|EOX92024.1| Tetratricopeptide
repeat-like superfamily protein [Theobroma cacao]
Length = 620
Score = 63.5 bits (153), Expect = 3e-08
Identities = 42/110 (38%), Positives = 60/110 (54%)
Frame = +1
Query: 7 LAQLTIRNSCLSRTVLRSIKVVPSLFKLHATWLQEYRLYHFTNRPTKISTSERDYSINQN 186
L L++R S L+ T L I +P L K +R + FT P + T + ++
Sbjct: 23 LMLLSLRISLLNSTSLPPIFQIPPLSK------SLHRYFSFT--PHSLLTPPKQRFSPRD 74
Query: 187 VARSNWLITKLSRDGKIGEARQLFDRMPERDVVTWTTVISGYIKCGLMRE 336
V SN I +LSR G I ARQLFD MP DVV+W ++I+GY + G ++E
Sbjct: 75 VFNSNVRIRQLSRAGNITAARQLFDNMPNNDVVSWNSIITGYWQNGCLQE 124