BLASTX nr result
ID: Cocculus23_contig00035345
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00035345
(234 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002266669.1| PREDICTED: pumilio homolog 5 [Vitis vinifera... 80 2e-13
emb|CBI40673.3| unnamed protein product [Vitis vinifera] 77 2e-12
ref|XP_002311896.2| hypothetical protein POPTR_0008s00490g [Popu... 77 3e-12
gb|AAF71823.1|AF153276_1 pumilio domain-containing protein PPD1 ... 77 3e-12
ref|XP_002268751.1| PREDICTED: pumilio homolog 5 [Vitis vinifera... 72 6e-11
gb|EXB53788.1| Pumilio-5-like protein [Morus notabilis] 71 1e-10
ref|XP_004235501.1| PREDICTED: pumilio homolog 5-like [Solanum l... 71 1e-10
ref|XP_007023664.1| Pumilio, putative isoform 5, partial [Theobr... 70 3e-10
ref|XP_007023663.1| Pumilio, putative isoform 4 [Theobroma cacao... 70 3e-10
ref|XP_007023662.1| Pumilio, putative isoform 3 [Theobroma cacao... 70 3e-10
ref|XP_007023661.1| Pumilio, putative isoform 2, partial [Theobr... 70 3e-10
ref|XP_007023660.1| Pumilio, putative isoform 1 [Theobroma cacao... 70 3e-10
ref|XP_002513314.1| pumilio, putative [Ricinus communis] gi|2235... 70 3e-10
ref|XP_006342853.1| PREDICTED: pumilio homolog 5-like [Solanum t... 70 4e-10
ref|XP_006381773.1| pumilio domain-containing protein PPD1 [Popu... 70 4e-10
ref|XP_006468093.1| PREDICTED: pumilio homolog 5-like isoform X4... 69 5e-10
ref|XP_006468090.1| PREDICTED: pumilio homolog 5-like isoform X1... 69 5e-10
ref|XP_006436386.1| hypothetical protein CICLE_v100306131mg [Cit... 69 5e-10
ref|XP_006436385.1| hypothetical protein CICLE_v100306131mg [Cit... 69 5e-10
ref|XP_006389557.1| hypothetical protein POPTR_0022s00840g [Popu... 64 2e-08
>ref|XP_002266669.1| PREDICTED: pumilio homolog 5 [Vitis vinifera]
gi|297735758|emb|CBI18445.3| unnamed protein product
[Vitis vinifera]
Length = 1053
Score = 80.5 bits (197), Expect = 2e-13
Identities = 46/79 (58%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Frame = -2
Query: 230 ALLSGHDT-TFAGRHKSLVDLIQEDFPRTPSPVYNHPRSLSHGAAEEVVDPNGH--SLQD 60
A++ G T + AGRHKSLVDLIQEDFPRTPSPVYN RS SH A EE++D + H SL D
Sbjct: 193 AVMPGQKTASSAGRHKSLVDLIQEDFPRTPSPVYNQSRSSSHAATEELLDLDVHAISLND 252
Query: 59 PSTSTSKLLDSNAAAVGVS 3
S SKL + V VS
Sbjct: 253 SSLEISKLPEPGPGTVDVS 271
>emb|CBI40673.3| unnamed protein product [Vitis vinifera]
Length = 400
Score = 77.4 bits (189), Expect = 2e-12
Identities = 45/79 (56%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Frame = -2
Query: 230 ALLSGHDT-TFAGRHKSLVDLIQEDFPRTPSPVYNHPRSLSHGAAEEVVDPNGH--SLQD 60
A++ G T + AGRHKSLVDLIQEDFP TPSPVYN RS SH A EE++D + H SL D
Sbjct: 36 AVMPGQKTASSAGRHKSLVDLIQEDFPHTPSPVYNQSRSSSHAATEELLDLDVHAISLND 95
Query: 59 PSTSTSKLLDSNAAAVGVS 3
S SKL V VS
Sbjct: 96 SSLEISKLPGPGPGTVDVS 114
>ref|XP_002311896.2| hypothetical protein POPTR_0008s00490g [Populus trichocarpa]
gi|550332073|gb|EEE89263.2| hypothetical protein
POPTR_0008s00490g [Populus trichocarpa]
Length = 992
Score = 77.0 bits (188), Expect = 3e-12
Identities = 44/76 (57%), Positives = 54/76 (71%), Gaps = 3/76 (3%)
Frame = -2
Query: 233 GALLSGHDTT-FAGRHKSLVDLIQEDFPRTPSPVYNHPRSLSHGAAEEVVDPNGHSLQD- 60
G +SG +TT AGRHKSLVDLIQEDFPRTPSPVY+ RS SH AAE +D + H++
Sbjct: 185 GVYISGQNTTSLAGRHKSLVDLIQEDFPRTPSPVYSQSRSSSH-AAEVGIDHDVHAISSN 243
Query: 59 -PSTSTSKLLDSNAAA 15
S S SK+ +SNA +
Sbjct: 244 VSSASMSKISESNAGS 259
>gb|AAF71823.1|AF153276_1 pumilio domain-containing protein PPD1 [Populus tremula x Populus
tremuloides]
Length = 966
Score = 77.0 bits (188), Expect = 3e-12
Identities = 44/76 (57%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Frame = -2
Query: 233 GALLSGHDTT-FAGRHKSLVDLIQEDFPRTPSPVYNHPRSLSHGAAEEVVDPNGHSLQD- 60
G +SG TT AGRHKSLVDLIQEDFPRTPSPVY+ RS SH AAE +D + H++
Sbjct: 185 GVYISGQSTTSLAGRHKSLVDLIQEDFPRTPSPVYSQSRSSSH-AAEAGIDHDVHAISSN 243
Query: 59 -PSTSTSKLLDSNAAA 15
S S SK+ +SNA +
Sbjct: 244 VSSASMSKISESNAGS 259
>ref|XP_002268751.1| PREDICTED: pumilio homolog 5 [Vitis vinifera]
gi|296089553|emb|CBI39372.3| unnamed protein product
[Vitis vinifera]
Length = 1017
Score = 72.4 bits (176), Expect = 6e-11
Identities = 40/71 (56%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Frame = -2
Query: 230 ALLSGHDTTF-AGRHKSLVDLIQEDFPRTPSPVYNHPRSLSHGAAEEVV--DPNGHSLQD 60
A SG D F AG+H+S VDLIQ+DFPRTPSPVYN RSL HG+ + V D + SL D
Sbjct: 192 AFWSGQDAAFLAGQHRSSVDLIQDDFPRTPSPVYNQSRSLIHGSPGKTVEHDADSSSLHD 251
Query: 59 PSTSTSKLLDS 27
S TS L+ S
Sbjct: 252 SSVGTSNLVAS 262
>gb|EXB53788.1| Pumilio-5-like protein [Morus notabilis]
Length = 1031
Score = 71.2 bits (173), Expect = 1e-10
Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -2
Query: 224 LSGHDTTF-AGRHKSLVDLIQEDFPRTPSPVYNHPRSLSHGAAEEVVDPNGHSLQDPSTS 48
+ G +T F A RHKSLVDLIQEDFPRTPSPVYN S H A+E++D N H++ +S
Sbjct: 184 MPGKNTGFLASRHKSLVDLIQEDFPRTPSPVYNQSHSSGHATADELIDFNVHAISSNISS 243
Query: 47 TSKLLDSNAAAV 12
K + ++ ++
Sbjct: 244 FEKTPEPSSGSI 255
>ref|XP_004235501.1| PREDICTED: pumilio homolog 5-like [Solanum lycopersicum]
Length = 995
Score = 71.2 bits (173), Expect = 1e-10
Identities = 35/50 (70%), Positives = 38/50 (76%)
Frame = -2
Query: 215 HDTTFAGRHKSLVDLIQEDFPRTPSPVYNHPRSLSHGAAEEVVDPNGHSL 66
H +FAG+HKSLVDLIQEDFPRTPSPVYN RS H AAEE D + SL
Sbjct: 188 HLASFAGQHKSLVDLIQEDFPRTPSPVYNQTRSSGHVAAEEPTDSDMQSL 237
>ref|XP_007023664.1| Pumilio, putative isoform 5, partial [Theobroma cacao]
gi|508779030|gb|EOY26286.1| Pumilio, putative isoform 5,
partial [Theobroma cacao]
Length = 732
Score = 70.1 bits (170), Expect = 3e-10
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Frame = -2
Query: 206 TFAGRHKSLVDLIQEDFPRTPSPVYNHPRSLSHGAAEEVVDPNGHSLQD--PSTSTSKLL 33
+ GRHKSLVDLIQEDFPRTPSPVY+ RS A EE +D + H++ PS + S++
Sbjct: 203 SLTGRHKSLVDLIQEDFPRTPSPVYSQSRSSGITATEETIDHDVHAISSNFPSINASEVP 262
Query: 32 DSNAAAVGV 6
DSN + V
Sbjct: 263 DSNFGSTDV 271
>ref|XP_007023663.1| Pumilio, putative isoform 4 [Theobroma cacao]
gi|508779029|gb|EOY26285.1| Pumilio, putative isoform 4
[Theobroma cacao]
Length = 865
Score = 70.1 bits (170), Expect = 3e-10
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Frame = -2
Query: 206 TFAGRHKSLVDLIQEDFPRTPSPVYNHPRSLSHGAAEEVVDPNGHSLQD--PSTSTSKLL 33
+ GRHKSLVDLIQEDFPRTPSPVY+ RS A EE +D + H++ PS + S++
Sbjct: 203 SLTGRHKSLVDLIQEDFPRTPSPVYSQSRSSGITATEETIDHDVHAISSNFPSINASEVP 262
Query: 32 DSNAAAVGV 6
DSN + V
Sbjct: 263 DSNFGSTDV 271
>ref|XP_007023662.1| Pumilio, putative isoform 3 [Theobroma cacao]
gi|508779028|gb|EOY26284.1| Pumilio, putative isoform 3
[Theobroma cacao]
Length = 878
Score = 70.1 bits (170), Expect = 3e-10
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Frame = -2
Query: 206 TFAGRHKSLVDLIQEDFPRTPSPVYNHPRSLSHGAAEEVVDPNGHSLQD--PSTSTSKLL 33
+ GRHKSLVDLIQEDFPRTPSPVY+ RS A EE +D + H++ PS + S++
Sbjct: 203 SLTGRHKSLVDLIQEDFPRTPSPVYSQSRSSGITATEETIDHDVHAISSNFPSINASEVP 262
Query: 32 DSNAAAVGV 6
DSN + V
Sbjct: 263 DSNFGSTDV 271
>ref|XP_007023661.1| Pumilio, putative isoform 2, partial [Theobroma cacao]
gi|508779027|gb|EOY26283.1| Pumilio, putative isoform 2,
partial [Theobroma cacao]
Length = 950
Score = 70.1 bits (170), Expect = 3e-10
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Frame = -2
Query: 206 TFAGRHKSLVDLIQEDFPRTPSPVYNHPRSLSHGAAEEVVDPNGHSLQD--PSTSTSKLL 33
+ GRHKSLVDLIQEDFPRTPSPVY+ RS A EE +D + H++ PS + S++
Sbjct: 203 SLTGRHKSLVDLIQEDFPRTPSPVYSQSRSSGITATEETIDHDVHAISSNFPSINASEVP 262
Query: 32 DSNAAAVGV 6
DSN + V
Sbjct: 263 DSNFGSTDV 271
>ref|XP_007023660.1| Pumilio, putative isoform 1 [Theobroma cacao]
gi|508779026|gb|EOY26282.1| Pumilio, putative isoform 1
[Theobroma cacao]
Length = 1005
Score = 70.1 bits (170), Expect = 3e-10
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Frame = -2
Query: 206 TFAGRHKSLVDLIQEDFPRTPSPVYNHPRSLSHGAAEEVVDPNGHSLQD--PSTSTSKLL 33
+ GRHKSLVDLIQEDFPRTPSPVY+ RS A EE +D + H++ PS + S++
Sbjct: 203 SLTGRHKSLVDLIQEDFPRTPSPVYSQSRSSGITATEETIDHDVHAISSNFPSINASEVP 262
Query: 32 DSNAAAVGV 6
DSN + V
Sbjct: 263 DSNFGSTDV 271
>ref|XP_002513314.1| pumilio, putative [Ricinus communis] gi|223547222|gb|EEF48717.1|
pumilio, putative [Ricinus communis]
Length = 1004
Score = 70.1 bits (170), Expect = 3e-10
Identities = 39/67 (58%), Positives = 47/67 (70%), Gaps = 2/67 (2%)
Frame = -2
Query: 200 AGRHKSLVDLIQEDFPRTPSPVYNHPRSLSHGAAEEVVDPNGHSLQD--PSTSTSKLLDS 27
AGRHKSLVDLIQEDFPRTPSPVY+ RS SH AAEE VD + H++ + SK +S
Sbjct: 198 AGRHKSLVDLIQEDFPRTPSPVYSQSRSSSH-AAEEAVDVDAHAISSNVSPVNISKGSES 256
Query: 26 NAAAVGV 6
N+ + V
Sbjct: 257 NSGSSDV 263
>ref|XP_006342853.1| PREDICTED: pumilio homolog 5-like [Solanum tuberosum]
Length = 1001
Score = 69.7 bits (169), Expect = 4e-10
Identities = 36/56 (64%), Positives = 39/56 (69%)
Frame = -2
Query: 215 HDTTFAGRHKSLVDLIQEDFPRTPSPVYNHPRSLSHGAAEEVVDPNGHSLQDPSTS 48
H +FAG+HKSLVDLIQEDFPRTPSPVYN RS H A EE D + SL S S
Sbjct: 197 HLASFAGQHKSLVDLIQEDFPRTPSPVYNQSRSSGHVAVEEPTDSDIQSLTLDSLS 252
>ref|XP_006381773.1| pumilio domain-containing protein PPD1 [Populus trichocarpa]
gi|550336528|gb|ERP59570.1| pumilio domain-containing
protein PPD1 [Populus trichocarpa]
Length = 776
Score = 69.7 bits (169), Expect = 4e-10
Identities = 37/62 (59%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Frame = -2
Query: 206 TFAGRHKSLVDLIQEDFPRTPSPVYNHPRSLSHGAAEEVVDPN--GHSLQDPSTSTSKLL 33
+ AG+ KSLVDLIQEDFPRTPSPVYN RSLS G +E D + SL DP+ STS +
Sbjct: 185 SLAGQSKSLVDLIQEDFPRTPSPVYNQSRSLSSGMTDEPADHDIVSSSLPDPTVSTSNAV 244
Query: 32 DS 27
S
Sbjct: 245 PS 246
>ref|XP_006468093.1| PREDICTED: pumilio homolog 5-like isoform X4 [Citrus sinensis]
Length = 1014
Score = 69.3 bits (168), Expect = 5e-10
Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Frame = -2
Query: 209 TTFAGRHKSLVDLIQEDFPRTPSPVYNHPRSLSHGAAEEVVDPNGH--SLQDPSTSTSKL 36
T+ GRHKSLVDLIQEDFPRTPSPV+N RS SH A EE++D + H SL S + S+
Sbjct: 202 TSLVGRHKSLVDLIQEDFPRTPSPVFNQSRSSSH-ATEELIDLDVHAISLDVSSMNISET 260
Query: 35 LDSNAAA 15
++N +A
Sbjct: 261 PEANGSA 267
>ref|XP_006468090.1| PREDICTED: pumilio homolog 5-like isoform X1 [Citrus sinensis]
gi|568827490|ref|XP_006468091.1| PREDICTED: pumilio
homolog 5-like isoform X2 [Citrus sinensis]
gi|568827492|ref|XP_006468092.1| PREDICTED: pumilio
homolog 5-like isoform X3 [Citrus sinensis]
Length = 1019
Score = 69.3 bits (168), Expect = 5e-10
Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Frame = -2
Query: 209 TTFAGRHKSLVDLIQEDFPRTPSPVYNHPRSLSHGAAEEVVDPNGH--SLQDPSTSTSKL 36
T+ GRHKSLVDLIQEDFPRTPSPV+N RS SH A EE++D + H SL S + S+
Sbjct: 202 TSLVGRHKSLVDLIQEDFPRTPSPVFNQSRSSSH-ATEELIDLDVHAISLDVSSMNISET 260
Query: 35 LDSNAAA 15
++N +A
Sbjct: 261 PEANGSA 267
>ref|XP_006436386.1| hypothetical protein CICLE_v100306131mg [Citrus clementina]
gi|557538582|gb|ESR49626.1| hypothetical protein
CICLE_v100306131mg [Citrus clementina]
Length = 1014
Score = 69.3 bits (168), Expect = 5e-10
Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Frame = -2
Query: 209 TTFAGRHKSLVDLIQEDFPRTPSPVYNHPRSLSHGAAEEVVDPNGH--SLQDPSTSTSKL 36
T+ GRHKSLVDLIQEDFPRTPSPV+N RS SH A EE++D + H SL S + S+
Sbjct: 202 TSLVGRHKSLVDLIQEDFPRTPSPVFNQSRSSSH-ATEELIDLDVHAISLDVSSMNISEA 260
Query: 35 LDSNAAA 15
++N +A
Sbjct: 261 PEANGSA 267
>ref|XP_006436385.1| hypothetical protein CICLE_v100306131mg [Citrus clementina]
gi|567887730|ref|XP_006436387.1| hypothetical protein
CICLE_v100306131mg [Citrus clementina]
gi|557538581|gb|ESR49625.1| hypothetical protein
CICLE_v100306131mg [Citrus clementina]
gi|557538583|gb|ESR49627.1| hypothetical protein
CICLE_v100306131mg [Citrus clementina]
Length = 1019
Score = 69.3 bits (168), Expect = 5e-10
Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Frame = -2
Query: 209 TTFAGRHKSLVDLIQEDFPRTPSPVYNHPRSLSHGAAEEVVDPNGH--SLQDPSTSTSKL 36
T+ GRHKSLVDLIQEDFPRTPSPV+N RS SH A EE++D + H SL S + S+
Sbjct: 202 TSLVGRHKSLVDLIQEDFPRTPSPVFNQSRSSSH-ATEELIDLDVHAISLDVSSMNISEA 260
Query: 35 LDSNAAA 15
++N +A
Sbjct: 261 PEANGSA 267
>ref|XP_006389557.1| hypothetical protein POPTR_0022s00840g [Populus trichocarpa]
gi|550312380|gb|ERP48471.1| hypothetical protein
POPTR_0022s00840g [Populus trichocarpa]
Length = 962
Score = 63.9 bits (154), Expect = 2e-08
Identities = 35/66 (53%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Frame = -2
Query: 218 GHDTTFAGRHKSLVDLIQEDFPRTPSPVYNHPRSLSHGAAEEVVDPNGH--SLQDPSTST 45
G AG+ K LVD+IQEDFPRTPSPVYN RSLS G +E D + SL D + ST
Sbjct: 184 GDAAPLAGQSKRLVDIIQEDFPRTPSPVYNQSRSLSPGTTDEAADQDVFFGSLHDSTAST 243
Query: 44 SKLLDS 27
S + S
Sbjct: 244 SNGIPS 249