BLASTX nr result
ID: Cocculus23_contig00035103
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00035103
(617 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 67 4e-15
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol... 67 4e-15
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera] 60 1e-14
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 65 2e-14
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 65 2e-14
ref|XP_006580845.1| PREDICTED: uncharacterized protein LOC102660... 67 2e-14
emb|CAN63649.1| hypothetical protein VITISV_037657 [Vitis vinifera] 59 5e-14
gb|AAX96308.1| retrotransposon protein, putative, Ty1-copia sub-... 64 2e-13
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p... 65 3e-13
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group] 65 3e-13
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 65 3e-13
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera] 80 5e-13
emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera] 80 5e-13
gb|AAU90262.1| integrase core domain containing protein [Oryza s... 60 2e-12
gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subc... 64 2e-12
emb|CAN67546.1| hypothetical protein VITISV_027734 [Vitis vinifera] 62 2e-12
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group] 60 2e-12
gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subc... 61 2e-12
emb|CAE76053.1| B1248C03.12 [Oryza sativa Japonica Group] 62 3e-12
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz... 59 5e-12
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 1313
Score = 67.4 bits (163), Expect(2) = 4e-15
Identities = 26/42 (61%), Positives = 35/42 (83%)
Frame = +2
Query: 2 PFFKLYNKHPSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 127
PF +L++K P Y+ LRIFGC C+P+LRPYN+HKL+FRS C+
Sbjct: 512 PFERLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCV 553
Score = 40.0 bits (92), Expect(2) = 4e-15
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +3
Query: 123 VFLGYSTSHKGYLCFHIPSGRLYISL-MSSSMNFFVLTTL 239
VFLGYS+ HKG+ C + +GR+Y+S ++ NFF +L
Sbjct: 553 VFLGYSSLHKGFKCLDVSTGRVYVSRDVTFDENFFPFASL 592
>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 969
Score = 67.4 bits (163), Expect(2) = 4e-15
Identities = 26/42 (61%), Positives = 35/42 (83%)
Frame = +2
Query: 2 PFFKLYNKHPSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 127
PF +L++K P Y+ LRIFGC C+P+LRPYN+HKL+FRS C+
Sbjct: 512 PFERLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCV 553
Score = 40.0 bits (92), Expect(2) = 4e-15
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +3
Query: 123 VFLGYSTSHKGYLCFHIPSGRLYISL-MSSSMNFFVLTTL 239
VFLGYS+ HKG+ C + +GR+Y+S ++ NFF +L
Sbjct: 553 VFLGYSSLHKGFKCLDVSTGRVYVSRDVTFDENFFPFASL 592
>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
Length = 1424
Score = 60.1 bits (144), Expect(2) = 1e-14
Identities = 23/41 (56%), Positives = 33/41 (80%)
Frame = +2
Query: 2 PFFKLYNKHPSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFC 124
P L+++ PSY+ L++FGC CYP+LRP+N+HKL+FRS C
Sbjct: 714 PLEVLFHQKPSYSXLKVFGCMCYPNLRPFNHHKLQFRSIPC 754
Score = 45.8 bits (107), Expect(2) = 1e-14
Identities = 50/183 (27%), Positives = 70/183 (38%), Gaps = 14/183 (7%)
Frame = +3
Query: 111 ALPSVFLGYSTSHKGYLCFHIPSGRLYISLMSSSMNFFVLTTLIFPLVLKHHIIPSPFYX 290
++P FLGYS +HKGY C P+G + IS ++ P
Sbjct: 751 SIPCTFLGYSLNHKGYKCLS-PNGNILISR---------------DVIFDEXAFPFAQLQ 794
Query: 291 XXXXXXXXXXXXXXXXNCIYTLPISISVHFLFTSRYHPLTSSPT--SIWP----NKYTSY 452
C +LP+ + S TSSPT SI+P + S
Sbjct: 795 SQKQXTSSFSSSXTSLPCQTSLPLMV-----LPSSTSCSTSSPTNPSIFPATSNHNVASQ 849
Query: 453 GHPCQGWSFKPRVLLTDA--------STLSSTESQSVQHTLQSLEWTAAVTAEFDALCKN 608
P F ++T + + L ST SV LQ W A+T E+ AL +N
Sbjct: 850 XPPSSAPPFPSHHMITRSKXGIFKPKAYLISTTPTSVPEALQLSHWKQAMTDEYLALLRN 909
Query: 609 NSW 617
N+W
Sbjct: 910 NTW 912
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 65.5 bits (158), Expect(2) = 2e-14
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = +2
Query: 2 PFFKLYNKHPSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 127
P KL+ + P Y+ LRIFGC C+P+LRPYNNHKL+FRS C+
Sbjct: 692 PLEKLFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCV 733
Score = 39.7 bits (91), Expect(2) = 2e-14
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +3
Query: 123 VFLGYSTSHKGYLCFHIPSGRLYIS 197
VFLG+ST HKG+ C + +GR+YIS
Sbjct: 733 VFLGFSTMHKGFKCLEVSTGRIYIS 757
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 65.5 bits (158), Expect(2) = 2e-14
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = +2
Query: 2 PFFKLYNKHPSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 127
P KL+ + P Y+ LRIFGC C+P+LRPYNNHKL+FRS C+
Sbjct: 659 PLEKLFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCV 700
Score = 39.7 bits (91), Expect(2) = 2e-14
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +3
Query: 123 VFLGYSTSHKGYLCFHIPSGRLYIS 197
VFLG+ST HKG+ C + +GR+YIS
Sbjct: 700 VFLGFSTMHKGFKCLEVSTGRIYIS 724
>ref|XP_006580845.1| PREDICTED: uncharacterized protein LOC102660325 [Glycine max]
Length = 868
Score = 67.0 bits (162), Expect(2) = 2e-14
Identities = 25/41 (60%), Positives = 34/41 (82%)
Frame = +2
Query: 5 FFKLYNKHPSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 127
+FKL NK P Y+ LR+FGC+C+P LRPYN+HKL++RS C+
Sbjct: 777 YFKLLNKQPDYSCLRVFGCSCFPFLRPYNSHKLDYRSQECI 817
Score = 38.1 bits (87), Expect(2) = 2e-14
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +3
Query: 123 VFLGYSTSHKGYLCFHIPSGRLYIS 197
+FLGYST+HKGY C P+G +YIS
Sbjct: 817 IFLGYSTAHKGYKCL-APNGHIYIS 840
>emb|CAN63649.1| hypothetical protein VITISV_037657 [Vitis vinifera]
Length = 1131
Score = 58.9 bits (141), Expect(2) = 5e-14
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +2
Query: 2 PFFKLYNKHPSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFC 124
P+ LY+ P+Y++LR++GCTCYP LRP+N HK +RS C
Sbjct: 642 PYKTLYHCLPNYSFLRVYGCTCYPFLRPFNRHKFAYRSVKC 682
Score = 44.7 bits (104), Expect(2) = 5e-14
Identities = 43/175 (24%), Positives = 65/175 (37%), Gaps = 5/175 (2%)
Frame = +3
Query: 108 FALPSV---FLGYSTSHKGYLCFHIPSGRLYISLMSSSMNFFVLTTLIFPLVLKHHIIPS 278
FA SV F+GYS+ HKGYLC ++ +G+++IS H+ P
Sbjct: 675 FAYRSVKCTFIGYSSKHKGYLCLNMSNGKIHIS---------------------RHVAPI 713
Query: 279 PFYXXXXXXXXXXXXXXXXXNCIYTLPISISVHFLFTSRYHPLTSSPTSIWPNKYTSYGH 458
P P S V S HP+T+
Sbjct: 714 P----------------------TAQPSSSHV----PSPCHPMTTR-------------- 733
Query: 459 PCQGWSFKPRVLLTDASTL--SSTESQSVQHTLQSLEWTAAVTAEFDALCKNNSW 617
+ FKP++ L+ T+ E S + ++ EW A+ EF+AL N +W
Sbjct: 734 -AKNGIFKPKIFLSPTKTIFHPLCEPNSFKEAVKVPEWQQAMHLEFEALMSNKTW 787
>gb|AAX96308.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77548933|gb|ABA91730.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1094
Score = 64.3 bits (155), Expect(2) = 2e-13
Identities = 25/42 (59%), Positives = 33/42 (78%)
Frame = +2
Query: 2 PFFKLYNKHPSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 127
P KL+++ P YT LR+ GC C+P+LRPYNNHKL+FRS C+
Sbjct: 346 PLEKLHHQKPDYTSLRVLGCACWPNLRPYNNHKLQFRSKRCV 387
Score = 37.4 bits (85), Expect(2) = 2e-13
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 123 VFLGYSTSHKGYLCFHIPSGRLYIS 197
VFLG+S HKG+ C + +GR+YIS
Sbjct: 387 VFLGFSNMHKGFKCLEVSTGRVYIS 411
>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa Japonica Group]
Length = 1448
Score = 65.5 bits (158), Expect(2) = 3e-13
Identities = 25/42 (59%), Positives = 32/42 (76%)
Frame = +2
Query: 2 PFFKLYNKHPSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 127
P KL+N+ P Y+ LR+F CTC+PHL PYN HKL+FRS C+
Sbjct: 668 PLEKLFNQKPDYSSLRVFSCTCWPHLHPYNTHKLQFRSKQCV 709
Score = 35.8 bits (81), Expect(2) = 3e-13
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +3
Query: 123 VFLGYSTSHKGYLCFHIPSGRLYIS 197
VFLG+ST HKG+ + SGR+YIS
Sbjct: 709 VFLGFSTHHKGFKFLDVSSGRVYIS 733
>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
Length = 1448
Score = 65.5 bits (158), Expect(2) = 3e-13
Identities = 25/42 (59%), Positives = 32/42 (76%)
Frame = +2
Query: 2 PFFKLYNKHPSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 127
P KL+N+ P Y+ LR+F CTC+PHL PYN HKL+FRS C+
Sbjct: 668 PLEKLFNQKPDYSSLRVFSCTCWPHLHPYNTHKLQFRSKQCV 709
Score = 35.8 bits (81), Expect(2) = 3e-13
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +3
Query: 123 VFLGYSTSHKGYLCFHIPSGRLYIS 197
VFLG+ST HKG+ + SGR+YIS
Sbjct: 709 VFLGFSTHHKGFKFLDVSSGRVYIS 733
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 64.7 bits (156), Expect(2) = 3e-13
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = +2
Query: 2 PFFKLYNKHPSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFC 124
P L+N+ P Y+ LR+FGC C+PHLRPYN HKL+FRS C
Sbjct: 665 PLEHLFNQTPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQC 705
Score = 36.2 bits (82), Expect(2) = 3e-13
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +3
Query: 126 FLGYSTSHKGYLCFHIPSGRLYIS 197
FLGYST HKG+ C +GR+YIS
Sbjct: 707 FLGYSTLHKGFKCLDPSTGRVYIS 730
>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
Length = 1402
Score = 80.1 bits (196), Expect = 5e-13
Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Frame = +2
Query: 2 PFFKLYNKHPSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCLPWL*HFSQRIPMLSHSFR 181
P+F L+ ++P Y +LR+FGC CYP +RPYNNHKL++RS C+ + + +
Sbjct: 692 PYFALFKRNPDYKFLRVFGCLCYPFIRPYNNHKLQYRSLKCVFLGYSLHHKGYLCLDNLT 751
Query: 182 SSLYFS-HVIFNEFLCPYHSNLSSSAQ---TSHNSFPILSHSSCPNIVTAH 322
+Y S HV+F+E P+ N+SSS + + P + SS P+ ++ H
Sbjct: 752 GRVYVSPHVVFDETQFPFAQNISSSPSKDASDESIIPXIIVSSNPSTLSFH 802
>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
Length = 1365
Score = 80.1 bits (196), Expect = 5e-13
Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Frame = +2
Query: 2 PFFKLYNKHPSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCLPWL*HFSQRIPMLSHSFR 181
P+F L+ ++P Y +LR+FGC CYP +RPYNNHKL++RS C+ + + +
Sbjct: 642 PYFALFKRNPDYKFLRVFGCLCYPFIRPYNNHKLQYRSLKCVFLGYSLHHKGYLCLDNLT 701
Query: 182 SSLYFS-HVIFNEFLCPYHSNLSSSAQ---TSHNSFPILSHSSCPNIVTAH 322
+Y S HV+F+E P+ N+SSS + + P + SS P+ ++ H
Sbjct: 702 GRVYVSPHVVFDETQFPFAQNISSSPSKDASDESVIPAIIVSSNPSTLSFH 752
>gb|AAU90262.1| integrase core domain containing protein [Oryza sativa Japonica
Group] gi|108710062|gb|ABF97857.1| retrotransposon
protein, putative, Ty1-copia subclass, expressed [Oryza
sativa Japonica Group]
Length = 1021
Score = 60.5 bits (145), Expect(2) = 2e-12
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = +2
Query: 2 PFFKLYNKHPSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 127
P +L N+ P+Y+ LR FGC C+P+LRPYNN KL+FRS C+
Sbjct: 580 PLERLLNQKPNYSSLRTFGCACWPNLRPYNNRKLQFRSKQCV 621
Score = 38.1 bits (87), Expect(2) = 2e-12
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +3
Query: 123 VFLGYSTSHKGYLCFHIPSGRLYIS 197
VFLGYS HKG+ C + +GR+YIS
Sbjct: 621 VFLGYSNIHKGFKCLDVATGRVYIS 645
>gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 807
Score = 63.9 bits (154), Expect(2) = 2e-12
Identities = 24/42 (57%), Positives = 34/42 (80%)
Frame = +2
Query: 2 PFFKLYNKHPSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 127
P +L+ + P+Y+ LR+FGC C+P+LRPYNNHKL+FRS C+
Sbjct: 628 PLERLFKQLPNYSLLRVFGCACWPNLRPYNNHKLQFRSKQCV 669
Score = 34.7 bits (78), Expect(2) = 2e-12
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 123 VFLGYSTSHKGYLCFHIPSGRLYIS 197
VFL YS HKG+ C + +GR+YIS
Sbjct: 669 VFLDYSHLHKGFKCLDVSTGRVYIS 693
>emb|CAN67546.1| hypothetical protein VITISV_027734 [Vitis vinifera]
Length = 1635
Score = 61.6 bits (148), Expect(2) = 2e-12
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = +2
Query: 2 PFFKLYNKHPSYTYLRIFGCTCYPHLRPYNNHKLEFRS 115
P+F L+ K P Y LR+FGC CYP +RPYN+HKL++RS
Sbjct: 497 PYFTLFQKVPDYKSLRVFGCLCYPFIRPYNSHKLQYRS 534
Score = 36.6 bits (83), Expect(2) = 2e-12
Identities = 43/184 (23%), Positives = 64/184 (34%), Gaps = 15/184 (8%)
Frame = +3
Query: 111 ALPSVFLGYSTSHKGYLCFHIPSGRLYISLMSSSMNFFVLTTLIFPLVLKHHIIPSPFYX 290
++ S+FLGYS +KG+LC +G +YI+ V FPL H + P+
Sbjct: 534 SVQSLFLGYSLHNKGFLCLDFLTGXVYIT------PHVVFDEGQFPLAKTHPLSPTKDTS 587
Query: 291 XXXXXXXXXXXXXXXXNCIYTLPISISVHFLFTSRYHPLTSSPTSIWPNKYTSYG-HPCQ 467
C S TS SSPT + H Q
Sbjct: 588 TDTLTPAIITSFPSPTFCSNGSHTSSLSSSPSTSEASDSVSSPTVTXASSTLPEDIHEDQ 647
Query: 468 GWSFKPRVLLT--------------DASTLSSTESQSVQHTLQSLEWTAAVTAEFDALCK 605
S P +T D S + +E +++ L+ W A+ E AL +
Sbjct: 648 PPSPSPAPRMTTRLIRGITKKKTILDLSAVKISEPYTLKQALKDPNWIQAMDLEIXALHR 707
Query: 606 NNSW 617
N +W
Sbjct: 708 NQTW 711
>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1210
Score = 60.1 bits (144), Expect(2) = 2e-12
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = +2
Query: 2 PFFKLYNKHPSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 127
P L+++ PSYT LR+FGC C+P+LRPYN KL+FRS C+
Sbjct: 656 PLEHLFHQKPSYTSLRVFGCACWPNLRPYNARKLQFRSKQCV 697
Score = 38.1 bits (87), Expect(2) = 2e-12
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +3
Query: 123 VFLGYSTSHKGYLCFHIPSGRLYIS 197
VFLGYS HKG+ C + +GR+YIS
Sbjct: 697 VFLGYSNLHKGFKCLDVAAGRVYIS 721
>gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1145
Score = 61.2 bits (147), Expect(2) = 2e-12
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = +2
Query: 2 PFFKLYNKHPSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFC 124
P K +++ P Y+ LR+FGC C+P+LRPYN HKL+FRS C
Sbjct: 535 PLEKFFHQKPDYSSLRVFGCACWPNLRPYNKHKLQFRSKRC 575
Score = 37.0 bits (84), Expect(2) = 2e-12
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +3
Query: 126 FLGYSTSHKGYLCFHIPSGRLYIS 197
FLG+S HKG+ C I SGR+YIS
Sbjct: 577 FLGFSNMHKGFKCLDISSGRVYIS 600
>emb|CAE76053.1| B1248C03.12 [Oryza sativa Japonica Group]
Length = 567
Score = 62.4 bits (150), Expect(2) = 3e-12
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = +2
Query: 2 PFFKLYNKHPSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 127
P KL+ ++P Y LR FGC C+PHLRPYN+ KL+FRS C+
Sbjct: 30 PLTKLFQQNPDYASLRTFGCACWPHLRPYNSRKLQFRSKQCM 71
Score = 35.4 bits (80), Expect(2) = 3e-12
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 123 VFLGYSTSHKGYLCFHIPSGRLYIS 197
+FLGYST HKG+ C + GR+Y S
Sbjct: 71 MFLGYSTMHKGFKCLDVALGRVYNS 95
>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
Group]
Length = 1399
Score = 58.5 bits (140), Expect(2) = 5e-12
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = +2
Query: 2 PFFKLYNKHPSYTYLRIFGCTCYPHLRPYNNHKLEFRSSFCL 127
P +L+ + P+YT LRIFGC +P+LRPYN HKL FRS C+
Sbjct: 627 PLEQLFKEKPNYTALRIFGCAVWPNLRPYNKHKLAFRSKRCV 668
Score = 38.5 bits (88), Expect(2) = 5e-12
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +3
Query: 123 VFLGYSTSHKGYLCFHIPSGRLYIS 197
VFLGYS HKG+ C I +GR+Y+S
Sbjct: 668 VFLGYSNLHKGFKCLEIATGRVYVS 692