BLASTX nr result
ID: Cocculus23_contig00034312
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00034312
(223 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN80130.1| hypothetical protein VITISV_001989 [Vitis vinifera] 104 3e-23
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 100 3e-22
emb|CAN74973.1| hypothetical protein VITISV_001042 [Vitis vinifera] 101 3e-22
emb|CAN81775.1| hypothetical protein VITISV_020071 [Vitis vinifera] 100 3e-22
emb|CAN81776.1| hypothetical protein VITISV_020072 [Vitis vinifera] 100 4e-22
gb|AAD17351.1| contains similarity to retrovirus-related polypro... 96 2e-21
emb|CAN77247.1| hypothetical protein VITISV_021658 [Vitis vinifera] 97 6e-21
ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664... 93 6e-21
emb|CAN83237.1| hypothetical protein VITISV_029623 [Vitis vinifera] 97 6e-21
emb|CAN84067.1| hypothetical protein VITISV_041979 [Vitis vinifera] 100 6e-21
gb|AAP43919.1| integrase [Gossypium hirsutum] 95 1e-20
emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera] 95 5e-20
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 96 1e-19
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc... 96 1e-19
emb|CAN82867.1| hypothetical protein VITISV_015468 [Vitis vinifera] 93 3e-19
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 94 4e-19
gb|ABC50100.1| gag-pol polyprotein [Bambusa multiplex] 96 6e-19
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 94 7e-19
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 90 7e-19
ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594... 90 7e-19
>emb|CAN80130.1| hypothetical protein VITISV_001989 [Vitis vinifera]
Length = 340
Score = 104 bits (259), Expect(2) = 3e-23
Identities = 45/57 (78%), Positives = 49/57 (85%)
Frame = -1
Query: 172 EHFLWPKMKRDVERMCARCITCKKVKSKSMPHGLYTHLSVPSEPWEDISMDFVLGLP 2
EHF WPKMKRDVER CARCITC++ KS+ +PHGLYT L VPS PW DISMDFVLGLP
Sbjct: 192 EHFFWPKMKRDVERACARCITCRQAKSRVLPHGLYTPLPVPSAPWVDISMDFVLGLP 248
Score = 29.6 bits (65), Expect(2) = 3e-23
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -3
Query: 221 GLTGHFGVQKTLKVLQRTF 165
GL GHFGV+KTL VL F
Sbjct: 176 GLMGHFGVRKTLDVLHEHF 194
>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 99.8 bits (247), Expect(2) = 3e-22
Identities = 42/61 (68%), Positives = 49/61 (80%)
Frame = -1
Query: 184 KCCKEHFLWPKMKRDVERMCARCITCKKVKSKSMPHGLYTHLSVPSEPWEDISMDFVLGL 5
K ++HF WP MKRDVER+C RC TCK+ K+KS PHGLYT L +PS PW DISMDFV+GL
Sbjct: 1407 KVMQDHFHWPHMKRDVERICERCPTCKQAKAKSQPHGLYTPLPIPSHPWNDISMDFVVGL 1466
Query: 4 P 2
P
Sbjct: 1467 P 1467
Score = 31.2 bits (69), Expect(2) = 3e-22
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3
Query: 221 GLTGHFGVQKTLKVLQRTF 165
GL GHFGV KT+KV+Q F
Sbjct: 1395 GLMGHFGVSKTIKVMQDHF 1413
>emb|CAN74973.1| hypothetical protein VITISV_001042 [Vitis vinifera]
Length = 1281
Score = 101 bits (251), Expect(2) = 3e-22
Identities = 44/57 (77%), Positives = 48/57 (84%)
Frame = -1
Query: 172 EHFLWPKMKRDVERMCARCITCKKVKSKSMPHGLYTHLSVPSEPWEDISMDFVLGLP 2
EHF WPKMK DVER CARCITC++ KS+ +PHGLYT L VPS PW DISMDFVLGLP
Sbjct: 926 EHFFWPKMKCDVERACARCITCRQAKSRVLPHGLYTPLPVPSAPWVDISMDFVLGLP 982
Score = 29.6 bits (65), Expect(2) = 3e-22
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -3
Query: 221 GLTGHFGVQKTLKVLQRTF 165
GL GHFGV+KTL VL F
Sbjct: 910 GLMGHFGVRKTLDVLHEHF 928
>emb|CAN81775.1| hypothetical protein VITISV_020071 [Vitis vinifera]
Length = 1159
Score = 100 bits (248), Expect(2) = 3e-22
Identities = 44/57 (77%), Positives = 48/57 (84%)
Frame = -1
Query: 172 EHFLWPKMKRDVERMCARCITCKKVKSKSMPHGLYTHLSVPSEPWEDISMDFVLGLP 2
EHF WPKMKRDVER+C RCIT ++ KSK +PHGLYT L VPS PW DISMDFVLGLP
Sbjct: 885 EHFFWPKMKRDVERVCVRCITYRQTKSKVLPHGLYTPLPVPSAPWFDISMDFVLGLP 941
Score = 30.4 bits (67), Expect(2) = 3e-22
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3
Query: 221 GLTGHFGVQKTLKVLQRTF 165
GL GHFGV+KTL+VL F
Sbjct: 869 GLMGHFGVRKTLEVLHEHF 887
>emb|CAN81776.1| hypothetical protein VITISV_020072 [Vitis vinifera]
Length = 366
Score = 100 bits (248), Expect(2) = 4e-22
Identities = 44/57 (77%), Positives = 48/57 (84%)
Frame = -1
Query: 172 EHFLWPKMKRDVERMCARCITCKKVKSKSMPHGLYTHLSVPSEPWEDISMDFVLGLP 2
EHF WPKMKRDVER+C RCIT ++ KSK +PHGLYT L VPS PW DISMDFVLGLP
Sbjct: 190 EHFFWPKMKRDVERVCVRCITYRQTKSKVLPHGLYTPLPVPSAPWFDISMDFVLGLP 246
Score = 30.4 bits (67), Expect(2) = 4e-22
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3
Query: 221 GLTGHFGVQKTLKVLQRTF 165
GL GHFGV+KTL+VL F
Sbjct: 174 GLMGHFGVRKTLEVLHEHF 192
>gb|AAD17351.1| contains similarity to retrovirus-related polyproteins and to CCHC
zinc finger protein (Pfam: PF00098, Score=16.3, E=0.051,
E= 1) [Arabidopsis thaliana] gi|7267432|emb|CAB77944.1|
putative polyprotein [Arabidopsis thaliana]
Length = 1138
Score = 96.3 bits (238), Expect(2) = 2e-21
Identities = 41/61 (67%), Positives = 47/61 (77%)
Frame = -1
Query: 184 KCCKEHFLWPKMKRDVERMCARCITCKKVKSKSMPHGLYTHLSVPSEPWEDISMDFVLGL 5
K ++HF WP MKRDVERMC RC TCK+ K+KS PHGL T L +P PW DISMDFV+GL
Sbjct: 782 KVMQDHFHWPHMKRDVERMCERCTTCKQAKAKSQPHGLCTPLPIPLHPWNDISMDFVVGL 841
Query: 4 P 2
P
Sbjct: 842 P 842
Score = 32.0 bits (71), Expect(2) = 2e-21
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -3
Query: 221 GLTGHFGVQKTLKVLQRTF 165
GL GHFGV KTLKV+Q F
Sbjct: 770 GLMGHFGVSKTLKVMQDHF 788
>emb|CAN77247.1| hypothetical protein VITISV_021658 [Vitis vinifera]
Length = 1323
Score = 97.1 bits (240), Expect(2) = 6e-21
Identities = 44/57 (77%), Positives = 46/57 (80%)
Frame = -1
Query: 172 EHFLWPKMKRDVERMCARCITCKKVKSKSMPHGLYTHLSVPSEPWEDISMDFVLGLP 2
EHF WPKMKRDVER CARCITC KS+ +PHGLYT L VPS P DISMDFVLGLP
Sbjct: 970 EHFFWPKMKRDVERACARCITCXXAKSRVLPHGLYTPLPVPSVPLVDISMDFVLGLP 1026
Score = 29.3 bits (64), Expect(2) = 6e-21
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 221 GLTGHFGVQKTLKVLQRTF 165
GL GHFGV+KTL +L F
Sbjct: 954 GLMGHFGVRKTLDILHEHF 972
>ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664455 [Glycine max]
Length = 1176
Score = 92.8 bits (229), Expect(2) = 6e-21
Identities = 39/58 (67%), Positives = 43/58 (74%)
Frame = -1
Query: 175 KEHFLWPKMKRDVERMCARCITCKKVKSKSMPHGLYTHLSVPSEPWEDISMDFVLGLP 2
+EHF WP M+RDV + C CI CK+ KSK PHGLYT L VP PW DISMDFVLGLP
Sbjct: 816 QEHFFWPHMRRDVHKFCGHCIVCKQAKSKVKPHGLYTPLPVPEYPWTDISMDFVLGLP 873
Score = 33.5 bits (75), Expect(2) = 6e-21
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -3
Query: 221 GLTGHFGVQKTLKVLQRTF 165
GL GHFGVQKTL++LQ F
Sbjct: 801 GLMGHFGVQKTLEILQEHF 819
>emb|CAN83237.1| hypothetical protein VITISV_029623 [Vitis vinifera]
Length = 1124
Score = 96.7 bits (239), Expect(2) = 6e-21
Identities = 41/57 (71%), Positives = 47/57 (82%)
Frame = -1
Query: 172 EHFLWPKMKRDVERMCARCITCKKVKSKSMPHGLYTHLSVPSEPWEDISMDFVLGLP 2
EHF WPKMKRDVE+ C CITC++ KS+ +PHGLYT L VPS PW +ISMDFVLGLP
Sbjct: 807 EHFFWPKMKRDVEKACVGCITCRQAKSRVLPHGLYTPLVVPSAPWVNISMDFVLGLP 863
Score = 29.6 bits (65), Expect(2) = 6e-21
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -3
Query: 221 GLTGHFGVQKTLKVLQRTF 165
GL GHFGV+KTL VL F
Sbjct: 791 GLMGHFGVRKTLDVLHEHF 809
>emb|CAN84067.1| hypothetical protein VITISV_041979 [Vitis vinifera]
Length = 364
Score = 100 bits (248), Expect(2) = 6e-21
Identities = 43/57 (75%), Positives = 48/57 (84%)
Frame = -1
Query: 172 EHFLWPKMKRDVERMCARCITCKKVKSKSMPHGLYTHLSVPSEPWEDISMDFVLGLP 2
EHF WPKMKRDVER CARCITC++ KS+ +PHGLYT L VPS PW +I MDFVLGLP
Sbjct: 190 EHFFWPKMKRDVERACARCITCRRTKSRVLPHGLYTLLPVPSAPWVNIYMDFVLGLP 246
Score = 26.2 bits (56), Expect(2) = 6e-21
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 212 GHFGVQKTLKVLQRTF 165
GHFGV+KTL VL F
Sbjct: 177 GHFGVRKTLDVLHEHF 192
>gb|AAP43919.1| integrase [Gossypium hirsutum]
Length = 334
Score = 94.7 bits (234), Expect(2) = 1e-20
Identities = 38/58 (65%), Positives = 49/58 (84%)
Frame = -1
Query: 175 KEHFLWPKMKRDVERMCARCITCKKVKSKSMPHGLYTHLSVPSEPWEDISMDFVLGLP 2
+EHF WP MK+DVE++C++CITCK+ KSK M HGLYT L +P+ PW D+SMDF+LGLP
Sbjct: 189 QEHFHWPHMKKDVEKVCSKCITCKQAKSKVMLHGLYTPLPIPTSPWVDLSMDFILGLP 246
Score = 30.4 bits (67), Expect(2) = 1e-20
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -3
Query: 221 GLTGHFGVQKTLKVLQRTF 165
GL GHFGV KTL +LQ F
Sbjct: 174 GLMGHFGVAKTLDILQEHF 192
>emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]
Length = 1173
Score = 95.1 bits (235), Expect(2) = 5e-20
Identities = 43/56 (76%), Positives = 45/56 (80%)
Frame = -1
Query: 172 EHFLWPKMKRDVERMCARCITCKKVKSKSMPHGLYTHLSVPSEPWEDISMDFVLGL 5
EH WPKMKRDVER CARCIT + KSK +PHGLYT L VPS PW DISMDFVLGL
Sbjct: 812 EHIFWPKMKRDVERACARCITYRHAKSKVLPHGLYTTLLVPSAPWVDISMDFVLGL 867
Score = 28.1 bits (61), Expect(2) = 5e-20
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -3
Query: 221 GLTGHFGVQKTLKVL 177
GL GHFGV+KTL VL
Sbjct: 796 GLMGHFGVRKTLDVL 810
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 96.3 bits (238), Expect(2) = 1e-19
Identities = 42/57 (73%), Positives = 46/57 (80%)
Frame = -1
Query: 172 EHFLWPKMKRDVERMCARCITCKKVKSKSMPHGLYTHLSVPSEPWEDISMDFVLGLP 2
+HF WPKM+RDVER ARC TC+K KS+ PHGLY L VPS PWEDISMDFVLGLP
Sbjct: 1248 DHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLP 1304
Score = 25.4 bits (54), Expect(2) = 1e-19
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 221 GLTGHFGVQKTLKVLQRTF 165
GL GHFGV+KT +L F
Sbjct: 1232 GLMGHFGVKKTEDILADHF 1250
>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 889
Score = 96.3 bits (238), Expect(2) = 1e-19
Identities = 42/57 (73%), Positives = 46/57 (80%)
Frame = -1
Query: 172 EHFLWPKMKRDVERMCARCITCKKVKSKSMPHGLYTHLSVPSEPWEDISMDFVLGLP 2
+HF WPKM+RDVER ARC TC+K KS+ PHGLY L VPS PWEDISMDFVLGLP
Sbjct: 561 DHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLP 617
Score = 25.4 bits (54), Expect(2) = 1e-19
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 221 GLTGHFGVQKTLKVLQRTF 165
GL GHFGV+KT +L F
Sbjct: 545 GLMGHFGVKKTEDILADHF 563
>emb|CAN82867.1| hypothetical protein VITISV_015468 [Vitis vinifera]
Length = 321
Score = 92.8 bits (229), Expect(2) = 3e-19
Identities = 41/57 (71%), Positives = 46/57 (80%)
Frame = -1
Query: 172 EHFLWPKMKRDVERMCARCITCKKVKSKSMPHGLYTHLSVPSEPWEDISMDFVLGLP 2
EHF WPKMK V+R ARCITC++ KS+ +PHGLYT L VPS PW DISMDFVLGLP
Sbjct: 159 EHFFWPKMKCGVKRAYARCITCRQAKSRVLPHGLYTPLPVPSAPWVDISMDFVLGLP 215
Score = 28.1 bits (61), Expect(2) = 3e-19
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3
Query: 221 GLTGHFGVQKTLKVLQRTF 165
GL GHFGV+KTL L F
Sbjct: 143 GLMGHFGVRKTLDALHEHF 161
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 94.4 bits (233), Expect(2) = 4e-19
Identities = 41/56 (73%), Positives = 45/56 (80%)
Frame = -1
Query: 169 HFLWPKMKRDVERMCARCITCKKVKSKSMPHGLYTHLSVPSEPWEDISMDFVLGLP 2
HF WPKM+RDVER ARC TC++ KS+ PHGLY L VPS PWEDISMDFVLGLP
Sbjct: 1265 HFFWPKMRRDVERFVARCTTCQRAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLP 1320
Score = 25.8 bits (55), Expect(2) = 4e-19
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 221 GLTGHFGVQKTLKVLQRTF 165
GL GHFGV+KT +L F
Sbjct: 1248 GLMGHFGVKKTEDILATHF 1266
>gb|ABC50100.1| gag-pol polyprotein [Bambusa multiplex]
Length = 227
Score = 95.5 bits (236), Expect(2) = 6e-19
Identities = 42/56 (75%), Positives = 45/56 (80%)
Frame = -1
Query: 169 HFLWPKMKRDVERMCARCITCKKVKSKSMPHGLYTHLSVPSEPWEDISMDFVLGLP 2
HF WPKM+RDVER ARC TC+K KS+ PHGLY L VPS PWEDISMDFVLGLP
Sbjct: 37 HFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLP 92
Score = 24.3 bits (51), Expect(2) = 6e-19
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 221 GLTGHFGVQKTLKVLQRTF 165
GL GHFG +KT +L F
Sbjct: 20 GLMGHFGAKKTEDILASHF 38
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 94.0 bits (232), Expect(2) = 7e-19
Identities = 41/57 (71%), Positives = 45/57 (78%)
Frame = -1
Query: 172 EHFLWPKMKRDVERMCARCITCKKVKSKSMPHGLYTHLSVPSEPWEDISMDFVLGLP 2
+HF WPKM+RDVER ARC TC+K K + PHGLY L VPS PWEDISMDFVLGLP
Sbjct: 1248 DHFFWPKMRRDVERFVARCTTCQKAKLRLNPHGLYMPLPVPSVPWEDISMDFVLGLP 1304
Score = 25.4 bits (54), Expect(2) = 7e-19
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 221 GLTGHFGVQKTLKVLQRTF 165
GL GHFGV+KT +L F
Sbjct: 1232 GLMGHFGVKKTEDILADHF 1250
>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 90.1 bits (222), Expect(2) = 7e-19
Identities = 35/57 (61%), Positives = 47/57 (82%)
Frame = -1
Query: 172 EHFLWPKMKRDVERMCARCITCKKVKSKSMPHGLYTHLSVPSEPWEDISMDFVLGLP 2
EHF WP M++DVE++C+ C+ CK+ KS+++PHGLYT L V + PW DISMDF+LGLP
Sbjct: 1173 EHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDFILGLP 1229
Score = 29.3 bits (64), Expect(2) = 7e-19
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 221 GLTGHFGVQKTLKVLQRTF 165
GL GHFGV KTL++L F
Sbjct: 1157 GLMGHFGVPKTLEILSEHF 1175
>ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594328 [Solanum tuberosum]
Length = 1191
Score = 90.1 bits (222), Expect(2) = 7e-19
Identities = 35/57 (61%), Positives = 47/57 (82%)
Frame = -1
Query: 172 EHFLWPKMKRDVERMCARCITCKKVKSKSMPHGLYTHLSVPSEPWEDISMDFVLGLP 2
EHF WP M++DVE++C+ C+ CK+ KS+++PHGLYT L V + PW DISMDF+LGLP
Sbjct: 930 EHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDFILGLP 986
Score = 29.3 bits (64), Expect(2) = 7e-19
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 221 GLTGHFGVQKTLKVLQRTF 165
GL GHFGV KTL++L F
Sbjct: 914 GLMGHFGVPKTLEILSEHF 932