BLASTX nr result
ID: Cocculus23_contig00033160
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00033160
(253 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 59 7e-07
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 58 2e-06
gb|ABW81094.1| RT6non-ltr [Cleome spinosa] 58 2e-06
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 58 2e-06
emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|72694... 57 3e-06
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 57 3e-06
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 55 8e-06
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 55 8e-06
ref|XP_006362703.1| PREDICTED: probable protein phosphatase 2C 7... 55 1e-05
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 55 1e-05
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 58.9 bits (141), Expect = 7e-07
Identities = 24/55 (43%), Positives = 39/55 (70%)
Frame = -2
Query: 204 LNLSHLLFVDDIVVVLKASEENVQTLLNALSSFSSWSGLQVNKEKSHLFLARVDQ 40
L++SHL+F DD+++ ++ + L F+SWSGL+VNK+KSHL+LA ++Q
Sbjct: 690 LSISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLNQ 744
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 57.8 bits (138), Expect = 2e-06
Identities = 24/55 (43%), Positives = 38/55 (69%)
Frame = -2
Query: 204 LNLSHLLFVDDIVVVLKASEENVQTLLNALSSFSSWSGLQVNKEKSHLFLARVDQ 40
L++SHL+F DD++V ++ + AL F+SWSGL VNK+K++L+LA D+
Sbjct: 691 LSISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGTDE 745
>gb|ABW81094.1| RT6non-ltr [Cleome spinosa]
Length = 459
Score = 57.8 bits (138), Expect = 2e-06
Identities = 30/75 (40%), Positives = 44/75 (58%)
Frame = -2
Query: 231 LELMSHCCTLNLSHLLFVDDIVVVLKASEENVQTLLNALSSFSSWSGLQVNKEKSHLFLA 52
L+L S C L+HL+F DD+V+ KAS +++Q + N L+ F SGL+VN K +FL
Sbjct: 51 LQLHSKCANPLLTHLIFADDLVIFSKASRQSMQAVQNCLNWFGRNSGLEVNTGKCEMFLG 110
Query: 51 RVDQELKKRLCSTSG 7
+ K+ L S G
Sbjct: 111 GLTDSEKQELSSCMG 125
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 57.8 bits (138), Expect = 2e-06
Identities = 24/55 (43%), Positives = 38/55 (69%)
Frame = -2
Query: 204 LNLSHLLFVDDIVVVLKASEENVQTLLNALSSFSSWSGLQVNKEKSHLFLARVDQ 40
L++SHL+F DD++V ++ + AL F+SWSGL VNK+K++L+LA D+
Sbjct: 691 LSISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGTDE 745
>emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|7269488|emb|CAB79491.1|
putative protein [Arabidopsis thaliana]
Length = 1141
Score = 57.0 bits (136), Expect = 3e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Frame = -2
Query: 204 LNLSHLLFVDDIVVVLKASEENVQTLLNALSSFSSWSGLQVNKEKSHLFLARVDQELKKR 25
L++SHL+F DD+++ ++ + L F+SWSGL+VN +KSH F A ++Q +
Sbjct: 668 LSISHLMFADDVMIFFDGGSSSLHGICETLEDFASWSGLKVNNDKSHFFCAGLEQAERNS 727
Query: 24 LCS 16
L +
Sbjct: 728 LAA 730
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 56.6 bits (135), Expect = 3e-06
Identities = 24/55 (43%), Positives = 38/55 (69%)
Frame = -2
Query: 204 LNLSHLLFVDDIVVVLKASEENVQTLLNALSSFSSWSGLQVNKEKSHLFLARVDQ 40
L++SHL+F DDI+V ++ + AL F+ WSGL +N+EK+HL+LA +D+
Sbjct: 643 LSISHLMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLYLAGLDR 697
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 55.5 bits (132), Expect = 8e-06
Identities = 25/65 (38%), Positives = 41/65 (63%)
Frame = -2
Query: 204 LNLSHLLFVDDIVVVLKASEENVQTLLNALSSFSSWSGLQVNKEKSHLFLARVDQELKKR 25
L++SHL+F DD+++ ++ + L F+ WSGL+VNK+KS LF A +D L +R
Sbjct: 550 LSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLD--LSER 607
Query: 24 LCSTS 10
+ S +
Sbjct: 608 ITSAA 612
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 55.5 bits (132), Expect = 8e-06
Identities = 25/65 (38%), Positives = 41/65 (63%)
Frame = -2
Query: 204 LNLSHLLFVDDIVVVLKASEENVQTLLNALSSFSSWSGLQVNKEKSHLFLARVDQELKKR 25
L++SHL+F DD+++ ++ + L F+ WSGL+VNK+KS LF A +D L +R
Sbjct: 550 LSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLD--LSER 607
Query: 24 LCSTS 10
+ S +
Sbjct: 608 ITSAA 612
>ref|XP_006362703.1| PREDICTED: probable protein phosphatase 2C 75-like [Solanum
tuberosum]
Length = 509
Score = 55.1 bits (131), Expect = 1e-05
Identities = 24/70 (34%), Positives = 44/70 (62%)
Frame = -2
Query: 213 CCTLNLSHLLFVDDIVVVLKASEENVQTLLNALSSFSSWSGLQVNKEKSHLFLARVDQEL 34
C L L+HL+F DD+++ E+ V+ ++ AL F+ +G+ N +KS++F+A +++
Sbjct: 88 CKNLKLTHLVFADDLLIFCSGKEQFVRRVMEALDHFTRVTGMIANMDKSNMFIAGTNEQT 147
Query: 33 KKRLCSTSGF 4
K L S +GF
Sbjct: 148 KALLLSITGF 157
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 55.1 bits (131), Expect = 1e-05
Identities = 28/70 (40%), Positives = 40/70 (57%)
Frame = -2
Query: 213 CCTLNLSHLLFVDDIVVVLKASEENVQTLLNALSSFSSWSGLQVNKEKSHLFLARVDQEL 34
C LNLSHL F DD+++ E +V+TL +A S+F S S L+ N +S +FLA VD
Sbjct: 515 CDQLNLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNS 574
Query: 33 KKRLCSTSGF 4
+ + F
Sbjct: 575 SDSVLQVTNF 584