BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00031996
         (568 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc...   240   2e-61
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   239   4e-61
ref|XP_007049888.1| DNA/RNA polymerases superfamily protein, par...   239   5e-61
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   237   1e-60
ref|XP_007045326.1| DNA/RNA polymerases superfamily protein [The...   237   2e-60
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         237   2e-60
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...   234   9e-60
ref|XP_007010495.1| Uncharacterized protein TCM_044370 [Theobrom...   233   2e-59
ref|XP_007019612.1| Uncharacterized protein TCM_035725 [Theobrom...   233   2e-59
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   233   2e-59
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       232   5e-59
ref|XP_007019474.1| Uncharacterized protein TCM_035549 [Theobrom...   232   5e-59
ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prun...   232   5e-59
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...   232   6e-59
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum...   231   1e-58
ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [The...   230   2e-58
ref|XP_007212569.1| hypothetical protein PRUPE_ppa015570mg, part...   229   4e-58
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                  229   5e-58
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  229   5e-58
ref|XP_007023626.1| Uncharacterized protein TCM_046829 [Theobrom...   228   9e-58

>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 889

 Score =  240 bits (613), Expect = 2e-61
 Identities = 107/192 (55%), Positives = 146/192 (76%), Gaps = 4/192 (2%)
 Frame = -1

Query: 565  EDVFFKRVLNDLENNQQGSYILSNNFLFKGNQLCIPDYSLRLQIINELHGG----HFGQK 398
            +D F   +LN +E      ++L+N F+F+ N+LCIP  S+R+ ++ E HGG    HFG K
Sbjct: 494  DDDFKDVLLNCMEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVK 553

Query: 397  KTFELVSKSFFWPSMRKDIDKYVNMCYICQRAKGTTSNAGLYLPLPLPKAPWTDVTMGFI 218
            KT ++++  FFWP MR+D++++V  C  CQ+AK   +  GLY+PLP+P  PW D++M F+
Sbjct: 554  KTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFV 613

Query: 217  LGLPRTQRGMDSIFVVVDRFSKMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSITSDR 38
            LGLPRT++G DSIFVVVDRFSKMAHFI C K+ DATH+A L+F+E+VRLHGVPN+I SDR
Sbjct: 614  LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDR 673

Query: 37   DSKFVSHFWRTL 2
            D+KF+SHFWRTL
Sbjct: 674  DTKFLSHFWRTL 685


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  239 bits (610), Expect = 4e-61
 Identities = 107/192 (55%), Positives = 145/192 (75%), Gaps = 4/192 (2%)
 Frame = -1

Query: 565  EDVFFKRVLNDLENNQQGSYILSNNFLFKGNQLCIPDYSLRLQIINELHGG----HFGQK 398
            +D F   +LN  E      ++L+N F+F+ N+LCIP  S+R+ ++ E HGG    HFG K
Sbjct: 1181 DDDFKNVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVK 1240

Query: 397  KTFELVSKSFFWPSMRKDIDKYVNMCYICQRAKGTTSNAGLYLPLPLPKAPWTDVTMGFI 218
            KT ++++  FFWP MR+D++++V  C  CQ+AK   +  GLY+PLP+P  PW D++M F+
Sbjct: 1241 KTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFV 1300

Query: 217  LGLPRTQRGMDSIFVVVDRFSKMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSITSDR 38
            LGLPRT++G DSIFVVVDRFSKMAHFI C K+ DATH+A L+F+E+VRLHGVPN+I SDR
Sbjct: 1301 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDR 1360

Query: 37   DSKFVSHFWRTL 2
            D+KF+SHFWRTL
Sbjct: 1361 DTKFLSHFWRTL 1372


>ref|XP_007049888.1| DNA/RNA polymerases superfamily protein, partial [Theobroma cacao]
            gi|508702149|gb|EOX94045.1| DNA/RNA polymerases
            superfamily protein, partial [Theobroma cacao]
          Length = 624

 Score =  239 bits (609), Expect = 5e-61
 Identities = 112/196 (57%), Positives = 143/196 (72%), Gaps = 7/196 (3%)
 Frame = -1

Query: 568  SEDVFFKRVLNDLENNQQGS---YILSNNFLFKGNQLCIPDYSLRLQIINELHG----GH 410
            S D +F +++ DL+ + Q     Y L  ++LFKGNQLCIP+ SLR QII ELHG    GH
Sbjct: 425  SSDSYFSKIIADLQGSLQAENLPYRLHEDYLFKGNQLCIPEGSLREQIIRELHGNGLGGH 484

Query: 409  FGQKKTFELVSKSFFWPSMRKDIDKYVNMCYICQRAKGTTSNAGLYLPLPLPKAPWTDVT 230
            FG+ KT  +V+  ++WP MR+D+++ V  C  C   KG+  N GLY+PLP P APW  ++
Sbjct: 485  FGRDKTLAMVADRYYWPKMRRDVERLVKRCPACLFGKGSAQNTGLYVPLPEPDAPWIHLS 544

Query: 229  MGFILGLPRTQRGMDSIFVVVDRFSKMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSI 50
            M F+LGLP+T +G DSIFVVVDRFSKMAHFI C +T DATHIA L+F+E+VRLHG+P SI
Sbjct: 545  MDFVLGLPKTAKGFDSIFVVVDRFSKMAHFIPCFRTSDATHIAELFFREIVRLHGIPTSI 604

Query: 49   TSDRDSKFVSHFWRTL 2
             SDRD KF+ HFWRTL
Sbjct: 605  VSDRDVKFMGHFWRTL 620


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  237 bits (605), Expect = 1e-60
 Identities = 107/192 (55%), Positives = 145/192 (75%), Gaps = 4/192 (2%)
 Frame = -1

Query: 565  EDVFFKRVLNDLENNQQGSYILSNNFLFKGNQLCIPDYSLRLQIINELHGG----HFGQK 398
            +D F   +LN  E      ++L+N F+F+ N+LCIP  S+R+ ++ E HGG    HFG K
Sbjct: 1181 DDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVK 1240

Query: 397  KTFELVSKSFFWPSMRKDIDKYVNMCYICQRAKGTTSNAGLYLPLPLPKAPWTDVTMGFI 218
            KT ++++  FFWP MR+D++++V  C  CQ+AK   +  GLY+PLP+P  PW D++M F+
Sbjct: 1241 KTEDILADHFFWPKMRRDVERFVARCTTCQKAKLRLNPHGLYMPLPVPSVPWEDISMDFV 1300

Query: 217  LGLPRTQRGMDSIFVVVDRFSKMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSITSDR 38
            LGLPRT++G DSIFVVVDRFSKMAHFI C K+ DATH+A L+F+E+VRLHGVPN+I SDR
Sbjct: 1301 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDR 1360

Query: 37   DSKFVSHFWRTL 2
            D+KF+SHFWRTL
Sbjct: 1361 DTKFLSHFWRTL 1372


>ref|XP_007045326.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508709261|gb|EOY01158.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 786

 Score =  237 bits (604), Expect = 2e-60
 Identities = 111/196 (56%), Positives = 143/196 (72%), Gaps = 7/196 (3%)
 Frame = -1

Query: 568  SEDVFFKRVLNDLENNQQGS---YILSNNFLFKGNQLCIPDYSLRLQIINELHG----GH 410
            S D +F +++ DL+ + Q     Y L  ++LFKGNQLCIP+ SLR QII ELHG    GH
Sbjct: 425  SSDSYFSKIIADLQGSLQAENLPYRLHEDYLFKGNQLCIPEGSLREQIIRELHGNGLGGH 484

Query: 409  FGQKKTFELVSKSFFWPSMRKDIDKYVNMCYICQRAKGTTSNAGLYLPLPLPKAPWTDVT 230
            FG+ KT  +V+  ++WP MR+D+++ V  C  C   KG+  N GLY+PLP P APW  ++
Sbjct: 485  FGRDKTLAMVADRYYWPKMRRDVERLVKRCPACLFGKGSAQNTGLYVPLPEPDAPWIHLS 544

Query: 229  MGFILGLPRTQRGMDSIFVVVDRFSKMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSI 50
            M F+LGLP+T +G DSIFVVVDRFSKMAHFI C +T +ATHIA L+F+E+VRLHG+P SI
Sbjct: 545  MDFVLGLPKTAKGFDSIFVVVDRFSKMAHFIPCFRTSNATHIAELFFREIVRLHGIPTSI 604

Query: 49   TSDRDSKFVSHFWRTL 2
             SDRD KF+ HFWRTL
Sbjct: 605  VSDRDVKFMGHFWRTL 620


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  237 bits (604), Expect = 2e-60
 Identities = 112/192 (58%), Positives = 145/192 (75%), Gaps = 5/192 (2%)
 Frame = -1

Query: 562  DVFFKRVLNDLENNQQ-GSYILSNNFLFKGNQLCIPDYSLRLQIINELHGG----HFGQK 398
            D  FK VL   ++ +    YI+S+ F+F+ N+LCIP  S+RL ++ E HGG    HFG K
Sbjct: 1156 DADFKDVLLHCKDGKGWNKYIVSDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAK 1215

Query: 397  KTFELVSKSFFWPSMRKDIDKYVNMCYICQRAKGTTSNAGLYLPLPLPKAPWTDVTMGFI 218
            KT ++++  FFWP MR+D+ + V  C  CQ+AK   +  GLYLPLP+P APW D++M F+
Sbjct: 1216 KTEDILAGHFFWPKMRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDFV 1275

Query: 217  LGLPRTQRGMDSIFVVVDRFSKMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSITSDR 38
            LGLPRT++G DS+FVVVDRFSKMAHFI C KT DATHIA L+F+E+VRLHGVPN+I SDR
Sbjct: 1276 LGLPRTRKGRDSVFVVVDRFSKMAHFIPCHKTDDATHIADLFFREIVRLHGVPNTIVSDR 1335

Query: 37   DSKFVSHFWRTL 2
            D+KF+SHFWRTL
Sbjct: 1336 DAKFLSHFWRTL 1347


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  234 bits (598), Expect = 9e-60
 Identities = 105/192 (54%), Positives = 143/192 (74%), Gaps = 4/192 (2%)
 Frame = -1

Query: 565  EDVFFKRVLNDLENNQQGSYILSNNFLFKGNQLCIPDYSLRLQIINELHGG----HFGQK 398
            +D F   +LN  E      ++L+N F+F+ N+LCIP  S+ + ++ E HGG    HFG K
Sbjct: 1077 DDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEAHGGGLMGHFGVK 1136

Query: 397  KTFELVSKSFFWPSMRKDIDKYVNMCYICQRAKGTTSNAGLYLPLPLPKAPWTDVTMGFI 218
            KT ++++   FWP MR+D++++V  C  CQ+AK   +  GLY+PLP+P  PW D++M F+
Sbjct: 1137 KTEDILADHLFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFV 1196

Query: 217  LGLPRTQRGMDSIFVVVDRFSKMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSITSDR 38
            LGLPRT++G DSIFVVVDRFSKMAHFI C K+ DATH+A L+F+E+VRLHGVPN+I SDR
Sbjct: 1197 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDR 1256

Query: 37   DSKFVSHFWRTL 2
            D+KF+SHFWRTL
Sbjct: 1257 DTKFLSHFWRTL 1268


>ref|XP_007010495.1| Uncharacterized protein TCM_044370 [Theobroma cacao]
            gi|508727408|gb|EOY19305.1| Uncharacterized protein
            TCM_044370 [Theobroma cacao]
          Length = 1306

 Score =  233 bits (595), Expect = 2e-59
 Identities = 112/196 (57%), Positives = 140/196 (71%), Gaps = 7/196 (3%)
 Frame = -1

Query: 568  SEDVFFKRVLNDLENNQQGS---YILSNNFLFKGNQLCIPDYSLRLQIINELHG----GH 410
            S D +F +++ DL+ + Q     Y L   +LFKGNQLCIP+  LR QII ELHG    GH
Sbjct: 869  SSDSYFSKIIADLQGSLQARNLPYRLHEAYLFKGNQLCIPEGYLREQIIRELHGNGLGGH 928

Query: 409  FGQKKTFELVSKSFFWPSMRKDIDKYVNMCYICQRAKGTTSNAGLYLPLPLPKAPWTDVT 230
            FG+ KT  +V+  ++WP MR+D+++ V  C  C   KG+  N GLY+PLP P APW  ++
Sbjct: 929  FGRDKTLAMVADRYYWPKMRRDVERLVKRCPTCLFGKGSAQNTGLYVPLPEPDAPWIHLS 988

Query: 229  MGFILGLPRTQRGMDSIFVVVDRFSKMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSI 50
            M F+LGLP+T +G DSIFVVVDRFSKMAHFI C +T DATHIA L+F EVVRLHG+P SI
Sbjct: 989  MDFVLGLPKTAKGFDSIFVVVDRFSKMAHFIPCFRTSDATHIAELFFCEVVRLHGIPTSI 1048

Query: 49   TSDRDSKFVSHFWRTL 2
             SDRD KF+ HFWRTL
Sbjct: 1049 VSDRDVKFMGHFWRTL 1064


>ref|XP_007019612.1| Uncharacterized protein TCM_035725 [Theobroma cacao]
           gi|508724940|gb|EOY16837.1| Uncharacterized protein
           TCM_035725 [Theobroma cacao]
          Length = 499

 Score =  233 bits (595), Expect = 2e-59
 Identities = 111/196 (56%), Positives = 141/196 (71%), Gaps = 7/196 (3%)
 Frame = -1

Query: 568 SEDVFFKRVLNDLENNQQGS---YILSNNFLFKGNQLCIPDYSLRLQIINELHG----GH 410
           S D +F +++ DL+ + Q     Y L  ++LFKGNQLCIP  SLR QII ELHG    GH
Sbjct: 20  SFDSYFSKIIADLQGSLQAENLPYRLHEDYLFKGNQLCIPKGSLREQIIRELHGNGLGGH 79

Query: 409 FGQKKTFELVSKSFFWPSMRKDIDKYVNMCYICQRAKGTTSNAGLYLPLPLPKAPWTDVT 230
           FG+ KT  +V+  ++WP MR+D+++ V  C  C   KG+  N GLY+PLP P APW  ++
Sbjct: 80  FGRDKTLAMVADRYYWPKMRRDVERLVKRCPACLFGKGSAQNTGLYVPLPEPDAPWIHLS 139

Query: 229 MGFILGLPRTQRGMDSIFVVVDRFSKMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSI 50
           M F+L LP+T +G DSIFVVVDRFSKMAHFI C +T DATHIA L+F+E+VRLHG+P SI
Sbjct: 140 MDFVLELPKTAKGFDSIFVVVDRFSKMAHFIPCFRTSDATHIAELFFREIVRLHGIPTSI 199

Query: 49  TSDRDSKFVSHFWRTL 2
            SDRD KF+ HFWRTL
Sbjct: 200 VSDRDVKFMGHFWRTL 215


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  233 bits (595), Expect = 2e-59
 Identities = 107/194 (55%), Positives = 144/194 (74%), Gaps = 5/194 (2%)
 Frame = -1

Query: 568  SEDVFFKRVLNDLENNQQ-GSYILSNNFLFKGNQLCIPDYSLRLQIINELHGG----HFG 404
            + D  F  VL   ++ +    +++++ F+F+ N+LCIP  S+RL ++ E HGG    HFG
Sbjct: 1151 AHDADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFG 1210

Query: 403  QKKTFELVSKSFFWPSMRKDIDKYVNMCYICQRAKGTTSNAGLYLPLPLPKAPWTDVTMG 224
             KKT ++++  FFWP MR+D+ ++V  C  CQ+AK      GLY+PLP+P  PW D++M 
Sbjct: 1211 AKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMD 1270

Query: 223  FILGLPRTQRGMDSIFVVVDRFSKMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSITS 44
            F+LGLPRT+RG DSIFVVVDRFSKMAHFI C KT DA+HIA L+F+E+VRLHGVPN+I S
Sbjct: 1271 FVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKTDDASHIADLFFREIVRLHGVPNTIVS 1330

Query: 43   DRDSKFVSHFWRTL 2
            DRD+KF+SHFWRTL
Sbjct: 1331 DRDTKFLSHFWRTL 1344



 Score =  142 bits (357), Expect = 8e-32
 Identities = 75/194 (38%), Positives = 115/194 (59%), Gaps = 7/194 (3%)
 Frame = -1

Query: 562  DVFFKRVLNDLENNQQGSYILSNN-FLFKGNQLCIPDY-SLRLQIINELHGG----HFGQ 401
            D   + +L +++  +   +I   +  L+  N++C+PD   L+  I+ E H      H G 
Sbjct: 1973 DPDMRGLLKNMKQGKAAGFIEDEHGTLWNRNRVCVPDVRELKQLILQEAHESPYSIHPGS 2032

Query: 400  KKTFELVSKSFFWPSMRKDIDKYVNMCYICQRAKGTTSN-AGLYLPLPLPKAPWTDVTMG 224
             K +  + + ++W SM+++I ++V +C +CQR K      AGL  PL +P+  W ++ M 
Sbjct: 2033 TKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMD 2092

Query: 223  FILGLPRTQRGMDSIFVVVDRFSKMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSITS 44
            FI GLP+TQ G DSI+VVVDR +K+A FI  + T     +A LYF  +V LHGVP  I S
Sbjct: 2093 FITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHGVPKKIVS 2152

Query: 43   DRDSKFVSHFWRTL 2
            DR+S+F SHFW+ L
Sbjct: 2153 DRESQFTSHFWKKL 2166


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  232 bits (592), Expect = 5e-59
 Identities = 104/192 (54%), Positives = 142/192 (73%), Gaps = 4/192 (2%)
 Frame = -1

Query: 565  EDVFFKRVLNDLENNQQGSYILSNNFLFKGNQLCIPDYSLRLQIINELHGG----HFGQK 398
            +D F   +LN  E      ++L+N F+F+ N+LCIP  S+ + ++ E HGG    HFG K
Sbjct: 1181 DDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEAHGGGLMGHFGVK 1240

Query: 397  KTFELVSKSFFWPSMRKDIDKYVNMCYICQRAKGTTSNAGLYLPLPLPKAPWTDVTMGFI 218
            K  ++++  FFWP  R+D++++V  C  CQ+AK   +  GLY+PLP+P  PW D++M F+
Sbjct: 1241 KMEDILADHFFWPKKRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFV 1300

Query: 217  LGLPRTQRGMDSIFVVVDRFSKMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSITSDR 38
            LGLPRT++G DSIFVVVDRFSKMAHFI C K+ DATH+A L+F+E+VRLHGVPN+I SDR
Sbjct: 1301 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDR 1360

Query: 37   DSKFVSHFWRTL 2
            D+KF+SHFWRTL
Sbjct: 1361 DTKFLSHFWRTL 1372


>ref|XP_007019474.1| Uncharacterized protein TCM_035549 [Theobroma cacao]
            gi|508724802|gb|EOY16699.1| Uncharacterized protein
            TCM_035549 [Theobroma cacao]
          Length = 1392

 Score =  232 bits (592), Expect = 5e-59
 Identities = 110/196 (56%), Positives = 141/196 (71%), Gaps = 7/196 (3%)
 Frame = -1

Query: 568  SEDVFFKRVLNDLENNQQGS---YILSNNFLFKGNQLCIPDYSLRLQIINELHG----GH 410
            S D +F +++ DL+ + Q     Y L  ++LFKGNQLCIP+ SLR QII ELHG    GH
Sbjct: 913  SSDSYFSKIIADLQGSLQAENLPYRLHEDYLFKGNQLCIPEGSLREQIIRELHGNGLGGH 972

Query: 409  FGQKKTFELVSKSFFWPSMRKDIDKYVNMCYICQRAKGTTSNAGLYLPLPLPKAPWTDVT 230
            FG+ KT  +V+  ++WP MR+D+++ V  C  C   KG+  N GLY+PLP P APW  ++
Sbjct: 973  FGRDKTLAMVADRYYWPKMRQDVERLVKRCPTCLFGKGSAQNTGLYVPLPEPDAPWIHLS 1032

Query: 229  MGFILGLPRTQRGMDSIFVVVDRFSKMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSI 50
            M F+LGLP+T +  DSIFVVVDRFSKMAHFI C +T DATHIA L+F+E+VRLH +P SI
Sbjct: 1033 MDFVLGLPKTAKRFDSIFVVVDRFSKMAHFIPCFRTSDATHIAELFFREIVRLHRIPTSI 1092

Query: 49   TSDRDSKFVSHFWRTL 2
             SDRD KF+ HFWRTL
Sbjct: 1093 VSDRDVKFMGHFWRTL 1108


>ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prunus persica]
            gi|462405925|gb|EMJ11389.1| hypothetical protein
            PRUPE_ppa017790mg [Prunus persica]
          Length = 1485

 Score =  232 bits (592), Expect = 5e-59
 Identities = 110/192 (57%), Positives = 138/192 (71%), Gaps = 5/192 (2%)
 Frame = -1

Query: 562  DVFFKRVLNDLENNQ-QGSYILSNNFLFKGNQLCIPDYSLRLQIINELHGG----HFGQK 398
            D  F  +     N +    Y L+  +LFKGNQLCIP  SLR ++I +LHGG    H G+ 
Sbjct: 1060 DADFGEIWTKCTNQEPMADYFLNEGYLFKGNQLCIPVSSLREKLIRDLHGGGLSGHLGRD 1119

Query: 397  KTFELVSKSFFWPSMRKDIDKYVNMCYICQRAKGTTSNAGLYLPLPLPKAPWTDVTMGFI 218
            KT   + + F+WP +++D+   V  CY CQ +KG   N GLY+PLP+P   W D+ M F+
Sbjct: 1120 KTIAGMEERFYWPQLKRDVGTIVRKCYTCQTSKGQVQNTGLYMPLPVPNDIWQDLAMDFV 1179

Query: 217  LGLPRTQRGMDSIFVVVDRFSKMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSITSDR 38
            LGLPRTQRG+DS+FVVVDRFSKMAHFIACRKT DA++IA L+F+EVVRLHGVP SITSDR
Sbjct: 1180 LGLPRTQRGVDSVFVVVDRFSKMAHFIACRKTADASNIAKLFFREVVRLHGVPTSITSDR 1239

Query: 37   DSKFVSHFWRTL 2
            D+KF+SHFW TL
Sbjct: 1240 DTKFLSHFWITL 1251


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  232 bits (591), Expect = 6e-59
 Identities = 106/194 (54%), Positives = 143/194 (73%), Gaps = 5/194 (2%)
 Frame = -1

Query: 568  SEDVFFKRVLNDLENNQQ-GSYILSNNFLFKGNQLCIPDYSLRLQIINELHGG----HFG 404
            + D  F  VL   ++ +    +++++ F+F+ N+LCIP  S+RL ++ E HGG    HFG
Sbjct: 1130 AHDADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFG 1189

Query: 403  QKKTFELVSKSFFWPSMRKDIDKYVNMCYICQRAKGTTSNAGLYLPLPLPKAPWTDVTMG 224
             KKT ++++  FFWP MR+D+ ++V  C  CQ+AK      GLY+PLP+P  PW D++M 
Sbjct: 1190 AKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMD 1249

Query: 223  FILGLPRTQRGMDSIFVVVDRFSKMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSITS 44
            F+LGLPRT+RG DSIFVVVDRFSKM HFI C KT DA+HIA L+F+E+VRLHGVPN+I S
Sbjct: 1250 FVLGLPRTKRGRDSIFVVVDRFSKMVHFIPCHKTDDASHIADLFFREIVRLHGVPNTIVS 1309

Query: 43   DRDSKFVSHFWRTL 2
            DRD+KF+SHFWRTL
Sbjct: 1310 DRDTKFLSHFWRTL 1323


>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
            aegilopoides]
          Length = 1704

 Score =  231 bits (589), Expect = 1e-58
 Identities = 106/192 (55%), Positives = 143/192 (74%), Gaps = 5/192 (2%)
 Frame = -1

Query: 562  DVFFKRVL-NDLENNQQGSYILSNNFLFKGNQLCIPDYSLRLQIINELHGG----HFGQK 398
            D  FK VL N  E      ++L++ F+F+ N+LCIP  S+RL ++ E HGG    HFG K
Sbjct: 1197 DAEFKDVLQNCKEGRTWNKFVLNDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGVK 1256

Query: 397  KTFELVSKSFFWPSMRKDIDKYVNMCYICQRAKGTTSNAGLYLPLPLPKAPWTDVTMGFI 218
            KT ++++  FFWP MR+D++++V  C  CQRAK   +  GLY+PLP+P  PW D++M F+
Sbjct: 1257 KTEDILATHFFWPKMRRDVERFVARCTTCQRAKSRLNPHGLYMPLPVPSVPWEDISMDFV 1316

Query: 217  LGLPRTQRGMDSIFVVVDRFSKMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSITSDR 38
            LGLPRT++G DSIFVVVDRFSKMAHFI C K+ DA ++A L+F+E++RLHGVPN+I SDR
Sbjct: 1317 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAVNVADLFFREIIRLHGVPNTIVSDR 1376

Query: 37   DSKFVSHFWRTL 2
            D+KF+SHFWR L
Sbjct: 1377 DTKFLSHFWRCL 1388


>ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508703673|gb|EOX95569.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 1452

 Score =  230 bits (587), Expect = 2e-58
 Identities = 109/196 (55%), Positives = 141/196 (71%), Gaps = 7/196 (3%)
 Frame = -1

Query: 568  SEDVFFKRVLNDLENNQQGS---YILSNNFLFKGNQLCIPDYSLRLQIINELHG----GH 410
            S D +F +++ DL+ + Q     Y L  ++LFKGNQLCIP+ SLR QII ELHG    GH
Sbjct: 973  SSDSYFSKIIADLQGSLQAENLPYRLHEDYLFKGNQLCIPEGSLREQIIRELHGNGLGGH 1032

Query: 409  FGQKKTFELVSKSFFWPSMRKDIDKYVNMCYICQRAKGTTSNAGLYLPLPLPKAPWTDVT 230
            FG+ KT  +V+  ++WP MR+D+++ V  C  C   KG+  N GLY+PLP P APW  ++
Sbjct: 1033 FGRDKTLVMVADRYYWPKMRRDVERLVKRCPACLFGKGSAQNTGLYVPLPEPDAPWIHLS 1092

Query: 229  MGFILGLPRTQRGMDSIFVVVDRFSKMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSI 50
            M F+LGLP+T +G DSIFVVVDRFSKMAHFI C +T DATHIA L+F+E+V LHG+P SI
Sbjct: 1093 MDFVLGLPKTTKGFDSIFVVVDRFSKMAHFIPCFRTSDATHIAELFFREIVILHGIPTSI 1152

Query: 49   TSDRDSKFVSHFWRTL 2
             SDR  KF+ +FWRTL
Sbjct: 1153 VSDRHVKFMGYFWRTL 1168


>ref|XP_007212569.1| hypothetical protein PRUPE_ppa015570mg, partial [Prunus persica]
           gi|462408434|gb|EMJ13768.1| hypothetical protein
           PRUPE_ppa015570mg, partial [Prunus persica]
          Length = 541

 Score =  229 bits (584), Expect = 4e-58
 Identities = 107/189 (56%), Positives = 138/189 (73%), Gaps = 5/189 (2%)
 Frame = -1

Query: 553 FKRVLNDLENNQ-QGSYILSNNFLFKGNQLCIPDYSLRLQIINELHGG----HFGQKKTF 389
           F+ +     N +    Y L+  +LFKGNQLCIP  SLR ++I +LHGG    H G  KT 
Sbjct: 170 FREIWTKCTNQEPMADYFLNEGYLFKGNQLCIPVSSLREKLIRDLHGGGLSGHLGCDKTI 229

Query: 388 ELVSKSFFWPSMRKDIDKYVNMCYICQRAKGTTSNAGLYLPLPLPKAPWTDVTMGFILGL 209
             + ++F+WP +++D+   V  CY CQ +KG   N GLY+PLP+P   W D+ M F+LGL
Sbjct: 230 AGMEETFYWPQLKRDVGTIVRKCYTCQTSKGQVQNTGLYVPLPVPNDIWQDLAMDFVLGL 289

Query: 208 PRTQRGMDSIFVVVDRFSKMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSITSDRDSK 29
           PRTQRG+DS+FVVVDRFSKMAHFIAC+KT DA++IA L+F+EVVRLHG+P SITSDRD+K
Sbjct: 290 PRTQRGVDSVFVVVDRFSKMAHFIACKKTDDASNIAKLFFREVVRLHGIPTSITSDRDTK 349

Query: 28  FVSHFWRTL 2
           F+SHFW TL
Sbjct: 350 FLSHFWITL 358


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score =  229 bits (583), Expect = 5e-58
 Identities = 105/192 (54%), Positives = 142/192 (73%), Gaps = 5/192 (2%)
 Frame = -1

Query: 562  DVFFKRVL-NDLENNQQGSYILSNNFLFKGNQLCIPDYSLRLQIINELHGG----HFGQK 398
            D  FK VL N  E      +I++N F+F+ N+LCIP  S+RL ++ E HGG    HFG K
Sbjct: 1212 DADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVK 1271

Query: 397  KTFELVSKSFFWPSMRKDIDKYVNMCYICQRAKGTTSNAGLYLPLPLPKAPWTDVTMGFI 218
            K  ++++  FFWP MR+D++++V  C  CQ+AK   +  GLY+PLP+P  PW D++M F+
Sbjct: 1272 KMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFV 1331

Query: 217  LGLPRTQRGMDSIFVVVDRFSKMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSITSDR 38
            LGLPRT++G DSIFVVVDRFSKMAHFI C K+ DA ++A L+F+E++RLHGVPN+I SDR
Sbjct: 1332 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFREIIRLHGVPNTIVSDR 1391

Query: 37   DSKFVSHFWRTL 2
            D+KF+SHFWR L
Sbjct: 1392 DAKFLSHFWRCL 1403


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  229 bits (583), Expect = 5e-58
 Identities = 105/192 (54%), Positives = 142/192 (73%), Gaps = 5/192 (2%)
 Frame = -1

Query: 562  DVFFKRVL-NDLENNQQGSYILSNNFLFKGNQLCIPDYSLRLQIINELHGG----HFGQK 398
            D  FK VL N  E      +I++N F+F+ N+LCIP  S+RL ++ E HGG    HFG K
Sbjct: 1209 DADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVK 1268

Query: 397  KTFELVSKSFFWPSMRKDIDKYVNMCYICQRAKGTTSNAGLYLPLPLPKAPWTDVTMGFI 218
            K  ++++  FFWP MR+D++++V  C  CQ+AK   +  GLY+PLP+P  PW D++M F+
Sbjct: 1269 KMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFV 1328

Query: 217  LGLPRTQRGMDSIFVVVDRFSKMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSITSDR 38
            LGLPRT++G DSIFVVVDRFSKMAHFI C K+ DA ++A L+F+E++RLHGVPN+I SDR
Sbjct: 1329 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFREIIRLHGVPNTIVSDR 1388

Query: 37   DSKFVSHFWRTL 2
            D+KF+SHFWR L
Sbjct: 1389 DAKFLSHFWRCL 1400


>ref|XP_007023626.1| Uncharacterized protein TCM_046829 [Theobroma cacao]
           gi|508778992|gb|EOY26248.1| Uncharacterized protein
           TCM_046829 [Theobroma cacao]
          Length = 672

 Score =  228 bits (581), Expect = 9e-58
 Identities = 105/171 (61%), Positives = 130/171 (76%), Gaps = 4/171 (2%)
 Frame = -1

Query: 502 LSNNFLFKGNQLCIPDYSLRLQIINELHG----GHFGQKKTFELVSKSFFWPSMRKDIDK 335
           L  ++LFKGNQLCIP+ SLR QII ELHG    GHFG+ KT  +V+  ++WP MR+D+++
Sbjct: 269 LHEDYLFKGNQLCIPEGSLREQIIRELHGNGLGGHFGRDKTLAMVADRYYWPKMRRDVER 328

Query: 334 YVNMCYICQRAKGTTSNAGLYLPLPLPKAPWTDVTMGFILGLPRTQRGMDSIFVVVDRFS 155
            V  C  C   KG+  N GLY+PLP P APW  ++M F+LGLP+T +G DSIFVVVDRFS
Sbjct: 329 LVKRCPACLFGKGSAQNTGLYVPLPEPDAPWIHLSMDFVLGLPKTAKGFDSIFVVVDRFS 388

Query: 154 KMAHFIACRKTMDATHIACLYFKEVVRLHGVPNSITSDRDSKFVSHFWRTL 2
           KMAHFI C +T DATHIA L+F+E+VRLHG+P SI SDRD KF+ HFWRTL
Sbjct: 389 KMAHFIPCFRTSDATHIAELFFREIVRLHGIPTSIVSDRDVKFMGHFWRTL 439