BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00031231
         (502 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   179   4e-43
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   177   2e-42
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   176   2e-42
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   176   2e-42
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           176   2e-42
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                176   4e-42
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...   175   5e-42
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   175   5e-42
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   175   7e-42
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   172   6e-41
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       171   1e-40
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga...   169   5e-40
ref|XP_004247247.1| PREDICTED: uncharacterized protein LOC101256...   168   6e-40
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   168   6e-40
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas...   168   8e-40
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   167   2e-39
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   166   2e-39
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   166   2e-39
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   166   2e-39
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   166   2e-39

>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
           [Arabidopsis thaliana]
          Length = 1164

 Score =  179 bits (454), Expect = 4e-43
 Identities = 87/167 (52%), Positives = 120/167 (71%)
 Frame = +2

Query: 2   PDGFNGFFFKATWDILGEDVLGAILEFFNSGKLLKEVNCTFISLIPKISSATNFGDFRPI 181
           PDGF+  FF A W I+G +V  AI EFF SGKLLK+ N T + LIPKI++A++  DFRPI
Sbjct: 364 PDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSDFRPI 423

Query: 182 SLCNTIYKFISRVLANRLKSVLPSIIDPAQSAFIKGRNIVDNILLAQDLVRGFQRRVHPP 361
           S  NT+YK IS++L +RLK  LP+ I  +QSAF+ GR  ++N+LLA +LV G+ ++   P
Sbjct: 424 SCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELVHGYNKKNIAP 483

Query: 362 AMALKVDLKKAFDSISWQFLFQAMKRMGFPDFFMKWIRECITTASFS 502
           +  LKVDL+KAFDS+ W F+  A++ +  P+ F  WI EC++TASFS
Sbjct: 484 SSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFS 530


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  177 bits (448), Expect = 2e-42
 Identities = 77/166 (46%), Positives = 117/166 (70%)
 Frame = +2

Query: 5   DGFNGFFFKATWDILGEDVLGAILEFFNSGKLLKEVNCTFISLIPKISSATNFGDFRPIS 184
           DGFN  FFK +W ++ +++   IL+FF +G + K +NCT ++LIPKI  A +  D+RPI+
Sbjct: 462 DGFNSVFFKKSWLVIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIA 521

Query: 185 LCNTIYKFISRVLANRLKSVLPSIIDPAQSAFIKGRNIVDNILLAQDLVRGFQRRVHPPA 364
            C+T+YK IS++L  RL++V+  ++D AQ+ FI  R+I DNILLA +L+RG+ RR   P 
Sbjct: 522 CCSTLYKIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPR 581

Query: 365 MALKVDLKKAFDSISWQFLFQAMKRMGFPDFFMKWIRECITTASFS 502
             +KVD++KA+DS+ W FL   +K +GFP  F++WI  C+ T S+S
Sbjct: 582 CVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMACVKTVSYS 627


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
           thaliana]
          Length = 1072

 Score =  176 bits (447), Expect = 2e-42
 Identities = 82/167 (49%), Positives = 121/167 (72%)
 Frame = +2

Query: 2   PDGFNGFFFKATWDILGEDVLGAILEFFNSGKLLKEVNCTFISLIPKISSATNFGDFRPI 181
           PDG++  FF+ TW I+G +VL AI EFF+SG+LLK+ N T + LIPK S+A    +FRPI
Sbjct: 327 PDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPI 386

Query: 182 SLCNTIYKFISRVLANRLKSVLPSIIDPAQSAFIKGRNIVDNILLAQDLVRGFQRRVHPP 361
           S  NT+YK IS++L +RL+ +L ++I  +QSAF+ GR++ +N+LLA ++V G+ R    P
Sbjct: 387 SCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISP 446

Query: 362 AMALKVDLKKAFDSISWQFLFQAMKRMGFPDFFMKWIRECITTASFS 502
              LKVDLKKAFDS+ W+F+  A++ +  P+ ++ WI +CITT SF+
Sbjct: 447 RGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFT 493


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  176 bits (447), Expect = 2e-42
 Identities = 74/166 (44%), Positives = 114/166 (68%)
 Frame = +2

Query: 5   DGFNGFFFKATWDILGEDVLGAILEFFNSGKLLKEVNCTFISLIPKISSATNFGDFRPIS 184
           DGFN +FFK +W  + +++   I EFFN+ ++ + +NC  ++L+PK+  AT   +FRPI+
Sbjct: 459 DGFNAYFFKKSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIA 518

Query: 185 LCNTIYKFISRVLANRLKSVLPSIIDPAQSAFIKGRNIVDNILLAQDLVRGFQRRVHPPA 364
            C  IYK IS++L NR+K ++  +++ AQS FI GR+I DNILLA +L+RG+ R+   P 
Sbjct: 519 CCTVIYKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPR 578

Query: 365 MALKVDLKKAFDSISWQFLFQAMKRMGFPDFFMKWIRECITTASFS 502
             +KVD++KA+DS+ W FL   +   GFP  F+ WI EC++T S+S
Sbjct: 579 CIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTVSYS 624


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  176 bits (447), Expect = 2e-42
 Identities = 82/167 (49%), Positives = 121/167 (72%)
 Frame = +2

Query: 2   PDGFNGFFFKATWDILGEDVLGAILEFFNSGKLLKEVNCTFISLIPKISSATNFGDFRPI 181
           PDG++  FF+ TW I+G +VL AI EFF+SG+LLK+ N T + LIPK S+A    +FRPI
Sbjct: 327 PDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPI 386

Query: 182 SLCNTIYKFISRVLANRLKSVLPSIIDPAQSAFIKGRNIVDNILLAQDLVRGFQRRVHPP 361
           S  NT+YK IS++L +RL+ +L ++I  +QSAF+ GR++ +N+LLA ++V G+ R    P
Sbjct: 387 SCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISP 446

Query: 362 AMALKVDLKKAFDSISWQFLFQAMKRMGFPDFFMKWIRECITTASFS 502
              LKVDLKKAFDS+ W+F+  A++ +  P+ ++ WI +CITT SF+
Sbjct: 447 RGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFT 493


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  176 bits (445), Expect = 4e-42
 Identities = 82/167 (49%), Positives = 115/167 (68%)
 Frame = +2

Query: 2   PDGFNGFFFKATWDILGEDVLGAILEFFNSGKLLKEVNCTFISLIPKISSATNFGDFRPI 181
           PDG+   FFKATW I G+D + AI  FF  G L K +N T ++LIPK   AT   D+RPI
Sbjct: 46  PDGYTSEFFKATWSITGQDFIAAIKSFFIKGFLPKGLNATILALIPKKDEATLMRDYRPI 105

Query: 182 SLCNTIYKFISRVLANRLKSVLPSIIDPAQSAFIKGRNIVDNILLAQDLVRGFQRRVHPP 361
           S CN IYK IS+++ANRLK +LP+ I   QSAF++ R +++N+LLA +LV+ + +    P
Sbjct: 106 SCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRERLLIENVLLATELVKDYHKDSISP 165

Query: 362 AMALKVDLKKAFDSISWQFLFQAMKRMGFPDFFMKWIRECITTASFS 502
             A+K+D+ KAFDS+ WQFL   ++ + FP+ F  WI+ CI+TA+FS
Sbjct: 166 RCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHWIKLCISTATFS 212


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
           thaliana]
          Length = 1253

 Score =  175 bits (444), Expect = 5e-42
 Identities = 88/172 (51%), Positives = 119/172 (69%), Gaps = 5/172 (2%)
 Frame = +2

Query: 2   PDGFNGFFFKATWDILGEDVLGAILEFFNSGKLLKEVNCTFISLIPKISSATNFGDFRPI 181
           PDGF   FFK TW ++G +V  A+ EFF S  LLK+ N T + LIPKI++A+   DFRPI
Sbjct: 416 PDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKITNASKMNDFRPI 475

Query: 182 SLCN-----TIYKFISRVLANRLKSVLPSIIDPAQSAFIKGRNIVDNILLAQDLVRGFQR 346
           S CN     T+YK I+R+L NRL+ +L  +I P QSAF+ GR + +N+LLA +LV+G+ R
Sbjct: 476 S-CNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLLATELVQGYNR 534

Query: 347 RVHPPAMALKVDLKKAFDSISWQFLFQAMKRMGFPDFFMKWIRECITTASFS 502
           +   P   LKVDL+KAFDSI W F+  A+K +G PD F+ WI +CI+T +FS
Sbjct: 535 QNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPTFS 586


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  175 bits (444), Expect = 5e-42
 Identities = 82/167 (49%), Positives = 113/167 (67%)
 Frame = +2

Query: 2    PDGFNGFFFKATWDILGEDVLGAILEFFNSGKLLKEVNCTFISLIPKISSATNFGDFRPI 181
            PDG+   FFKATW + G D + AI  FF  G L K +N T ++LIPK   A    D+RPI
Sbjct: 770  PDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPI 829

Query: 182  SLCNTIYKFISRVLANRLKSVLPSIIDPAQSAFIKGRNIVDNILLAQDLVRGFQRRVHPP 361
            S CN +YK IS++LANRLK +LPS I   QSAF+K R +++N+LLA +LV+ + +    P
Sbjct: 830  SCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVTP 889

Query: 362  AMALKVDLKKAFDSISWQFLFQAMKRMGFPDFFMKWIRECITTASFS 502
              A+K+D+ KAFDS+ WQFL   ++ + FP+ F  WI+ CI+TA+FS
Sbjct: 890  RCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATFS 936


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  175 bits (443), Expect = 7e-42
 Identities = 81/167 (48%), Positives = 116/167 (69%)
 Frame = +2

Query: 2   PDGFNGFFFKATWDILGEDVLGAILEFFNSGKLLKEVNCTFISLIPKISSATNFGDFRPI 181
           PDG+   FFK TW I+G  ++ A+ EFF SG+LL + N T ++++PK  +A    +FRPI
Sbjct: 466 PDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPI 525

Query: 182 SLCNTIYKFISRVLANRLKSVLPSIIDPAQSAFIKGRNIVDNILLAQDLVRGFQRRVHPP 361
           S CN IYK IS++LA RL+++LP  I P+QSAF+KGR + +N+LLA +LV+GF +     
Sbjct: 526 SCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANISS 585

Query: 362 AMALKVDLKKAFDSISWQFLFQAMKRMGFPDFFMKWIRECITTASFS 502
              LKVDL+KAFDS+ W F+ + +K    P  F+ WI++CIT+ SFS
Sbjct: 586 RGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFS 632


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score =  172 bits (435), Expect = 6e-41
 Identities = 81/167 (48%), Positives = 111/167 (66%)
 Frame = +2

Query: 2   PDGFNGFFFKATWDILGEDVLGAILEFFNSGKLLKEVNCTFISLIPKISSATNFGDFRPI 181
           PDG+   FFKATW+I+G++   A+  FF  G L K +N T ++LIPK + A    D+RPI
Sbjct: 473 PDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPI 532

Query: 182 SLCNTIYKFISRVLANRLKSVLPSIIDPAQSAFIKGRNIVDNILLAQDLVRGFQRRVHPP 361
           S CN +YK IS+++ANRLK VLP  I   QSAF+K R +++N+LLA +LV+ + +     
Sbjct: 533 SCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTIST 592

Query: 362 AMALKVDLKKAFDSISWQFLFQAMKRMGFPDFFMKWIRECITTASFS 502
             A+K+D+ KAFDS+ W FL      +GFP  F+ WI  CITTASFS
Sbjct: 593 RCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFS 639


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  171 bits (432), Expect = 1e-40
 Identities = 84/167 (50%), Positives = 115/167 (68%)
 Frame = +2

Query: 2   PDGFNGFFFKATWDILGEDVLGAILEFFNSGKLLKEVNCTFISLIPKISSATNFGDFRPI 181
           PDGF   FF  +W I+G +V  AI EFF+SG LLK+ N T I LIPKI + T   DFRPI
Sbjct: 467 PDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPI 526

Query: 182 SLCNTIYKFISRVLANRLKSVLPSIIDPAQSAFIKGRNIVDNILLAQDLVRGFQRRVHPP 361
           S  NT+YK I+R+L +RL+ +L  +I  AQSAF+ GR++ +N+LLA DLV G+      P
Sbjct: 527 SCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISP 586

Query: 362 AMALKVDLKKAFDSISWQFLFQAMKRMGFPDFFMKWIRECITTASFS 502
              LKVDLKKAFDS+ W+F+  A++ +  P+ F+ WI +CI+T +F+
Sbjct: 587 RGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFT 633


>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1389

 Score =  169 bits (427), Expect = 5e-40
 Identities = 79/168 (47%), Positives = 116/168 (69%), Gaps = 1/168 (0%)
 Frame = +2

Query: 2   PDGFNGFFFKATWDILGEDVLGAILEFFNSGKLLKEVNCTFISLIPKISSATNFGDFRPI 181
           PDGF  +FF+  W ++G+ V  A+  FF+SG +LKEVN TF++LIPK+    N   FRPI
Sbjct: 464 PDGFPPYFFQKYWTLIGKSVCRAVQAFFHSGYMLKEVNHTFLALIPKVDKPVNANHFRPI 523

Query: 182 SLCNTIYKFISRVLANRLKSVLPSIIDPAQSAFIKGRNIVDNILLAQDLVRGFQRRVHPP 361
           SLC+TIYK IS+++ NRLK  L  II P Q AFI  R I DNIL+A ++   F+ +    
Sbjct: 524 SLCSTIYKVISKIITNRLKITLGKIIHPLQGAFIPERLIQDNILIAHEVFHSFKNKTGRG 583

Query: 362 A-MALKVDLKKAFDSISWQFLFQAMKRMGFPDFFMKWIRECITTASFS 502
             +A+K+D++KA+D + W++++  M +MGF   +++WIR CI++ASFS
Sbjct: 584 GWIAIKLDMEKAYDRLEWKYIYTTMDKMGFSPIWIEWIRSCISSASFS 631


>ref|XP_004247247.1| PREDICTED: uncharacterized protein LOC101256917 [Solanum
           lycopersicum]
          Length = 421

 Score =  168 bits (426), Expect = 6e-40
 Identities = 74/166 (44%), Positives = 107/166 (64%)
 Frame = +2

Query: 5   DGFNGFFFKATWDILGEDVLGAILEFFNSGKLLKEVNCTFISLIPKISSATNFGDFRPIS 184
           DG+N FFFK TW I+  D++  +  FF  GKL K  NCT +SLIPK+ S  N  ++R I+
Sbjct: 127 DGYNAFFFKYTWKIIKNDIIEVVQSFFKPGKLFKPFNCTLVSLIPKVQSPKNVKEYRTIT 186

Query: 185 LCNTIYKFISRVLANRLKSVLPSIIDPAQSAFIKGRNIVDNILLAQDLVRGFQRRVHPPA 364
            C  +YK IS+V+ NR+  V+ ++I  +Q  FI GR I +NILLA +LV  + R+   P 
Sbjct: 187 CCTVLYKIISKVITNRMHDVIHNVICDSQVGFILGRKISENILLAHELVNSYTRKNISPR 246

Query: 365 MALKVDLKKAFDSISWQFLFQAMKRMGFPDFFMKWIRECITTASFS 502
             LK+DL+K +DS+ W FL Q M  +GFPD F +W+  C+ T +++
Sbjct: 247 SMLKIDLQKVYDSVEWPFLKQVMVGLGFPDMFTQWVMHCVKTVNYT 292


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score =  168 bits (426), Expect = 6e-40
 Identities = 80/167 (47%), Positives = 112/167 (67%)
 Frame = +2

Query: 2   PDGFNGFFFKATWDILGEDVLGAILEFFNSGKLLKEVNCTFISLIPKISSATNFGDFRPI 181
           PDG+   F+KA+W+I+G++V+ AI  FF  G L K VN T ++LIPK   A    D+RPI
Sbjct: 194 PDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPI 253

Query: 182 SLCNTIYKFISRVLANRLKSVLPSIIDPAQSAFIKGRNIVDNILLAQDLVRGFQRRVHPP 361
           S CN +YK IS++LANRLK +LP  I   QSAF+K R +++N+LLA +LV+ + +     
Sbjct: 254 SCCNVLYKAISKILANRLKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSIST 313

Query: 362 AMALKVDLKKAFDSISWQFLFQAMKRMGFPDFFMKWIRECITTASFS 502
             A+K+D+ KAFDS+ W FL   +  M FP  F+ WI  C++TASFS
Sbjct: 314 RCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFS 360


>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 402

 Score =  168 bits (425), Expect = 8e-40
 Identities = 73/166 (43%), Positives = 119/166 (71%)
 Frame = +2

Query: 5   DGFNGFFFKATWDILGEDVLGAILEFFNSGKLLKEVNCTFISLIPKISSATNFGDFRPIS 184
           DG+N  FFK +W+I+G+ V+ AIL+FF +G + K +NCT+++L+PK  + T+  +FRPI+
Sbjct: 142 DGYNVHFFKCSWNIIGDSVIDAILDFFKTGFMPKIINCTYMTLLPKEVNVTSVKNFRPIA 201

Query: 185 LCNTIYKFISRVLANRLKSVLPSIIDPAQSAFIKGRNIVDNILLAQDLVRGFQRRVHPPA 364
            C+ IYK IS++L +R++ VL S++   QSAF+KGR I DNI+L+ +LV+ + R+   P 
Sbjct: 202 CCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNIILSHELVKSYSRKGISPR 261

Query: 365 MALKVDLKKAFDSISWQFLFQAMKRMGFPDFFMKWIRECITTASFS 502
             +K+DL+KA++S+ W F+   M  +GF   F+ W+  C+TTAS++
Sbjct: 262 CMVKIDLQKAYNSVEWPFIKHLMLELGFSYKFVNWVMGCLTTASYT 307


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
           subsp. vesca]
          Length = 958

 Score =  167 bits (422), Expect = 2e-39
 Identities = 77/168 (45%), Positives = 111/168 (66%), Gaps = 1/168 (0%)
 Frame = +2

Query: 2   PDGFNGFFFKATWDILGEDVLGA-ILEFFNSGKLLKEVNCTFISLIPKISSATNFGDFRP 178
           PDGFNG FF+  W ++G++V+ A + EFF+ G LL E+N T I+L+PK+++ T   DFRP
Sbjct: 293 PDGFNGCFFQKAWLVIGDNVVAAAVKEFFSYGSLLMELNSTIITLVPKVANPTTMSDFRP 352

Query: 179 ISLCNTIYKFISRVLANRLKSVLPSIIDPAQSAFIKGRNIVDNILLAQDLVRGFQRRVHP 358
           IS CNT YK I+++LANRLK  L  I+ P+QS FI GR I DNILLAQ+++  + +    
Sbjct: 353 ISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFIPGRRIGDNILLAQEIICDYHKADGQ 412

Query: 359 PAMALKVDLKKAFDSISWQFLFQAMKRMGFPDFFMKWIRECITTASFS 502
           P     VD+ KA D++ W F+   ++    P   + WI+ CI++A FS
Sbjct: 413 PRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSCISSAKFS 460


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 893

 Score =  166 bits (421), Expect = 2e-39
 Identities = 77/167 (46%), Positives = 115/167 (68%)
 Frame = +2

Query: 2   PDGFNGFFFKATWDILGEDVLGAILEFFNSGKLLKEVNCTFISLIPKISSATNFGDFRPI 181
           PDG++  FFK  W ++G +V  A+ EFF SG+LLK+ N T + LIPKI++++   DFRPI
Sbjct: 468 PDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPI 527

Query: 182 SLCNTIYKFISRVLANRLKSVLPSIIDPAQSAFIKGRNIVDNILLAQDLVRGFQRRVHPP 361
           S  NT+YK I+++L +RLK +L  +I P+QSAF+ GR + +N+LLA ++V G+  +    
Sbjct: 528 SCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISS 587

Query: 362 AMALKVDLKKAFDSISWQFLFQAMKRMGFPDFFMKWIRECITTASFS 502
              LKVDL+KAFDS+ W F+  A + +  P+ F+ WI +CI+T  FS
Sbjct: 588 RGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFS 634


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  166 bits (421), Expect = 2e-39
 Identities = 80/167 (47%), Positives = 111/167 (66%)
 Frame = +2

Query: 2    PDGFNGFFFKATWDILGEDVLGAILEFFNSGKLLKEVNCTFISLIPKISSATNFGDFRPI 181
            PDG+   FF+ TW ++G++V  AI  FF  G L K +N T ++LIPK + A    D+RPI
Sbjct: 739  PDGYTVEFFRETWSVIGQEVTMAIKSFFTYGFLPKGLNSTILALIPKRTYAKEMKDYRPI 798

Query: 182  SLCNTIYKFISRVLANRLKSVLPSIIDPAQSAFIKGRNIVDNILLAQDLVRGFQRRVHPP 361
            S CN +YK IS++LANRLK +LP  I P QSAFI  R +++N+LLA +LV+ + +    P
Sbjct: 799  SCCNVLYKAISKLLANRLKCLLPEFIAPNQSAFISDRLLMENLLLASELVKDYHKDGLSP 858

Query: 362  AMALKVDLKKAFDSISWQFLFQAMKRMGFPDFFMKWIRECITTASFS 502
              A+K+DL KAFDS+ W FL   +  +  P+ F+ WI  CI+TASFS
Sbjct: 859  RCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHWINLCISTASFS 905


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  166 bits (421), Expect = 2e-39
 Identities = 79/167 (47%), Positives = 109/167 (65%)
 Frame = +2

Query: 2   PDGFNGFFFKATWDILGEDVLGAILEFFNSGKLLKEVNCTFISLIPKISSATNFGDFRPI 181
           PDG+   F+K  W+I+G + + AI  FF  G L K +N T ++LIPK   A    D+RPI
Sbjct: 361 PDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPI 420

Query: 182 SLCNTIYKFISRVLANRLKSVLPSIIDPAQSAFIKGRNIVDNILLAQDLVRGFQRRVHPP 361
           S CN +YK IS+++ANRLK VLP  I   QSAF+K R +++N+LLA ++V+ + +     
Sbjct: 421 SCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSS 480

Query: 362 AMALKVDLKKAFDSISWQFLFQAMKRMGFPDFFMKWIRECITTASFS 502
             ALK+D+ KAFDS+ W+FL   ++ M FP  F  WI  CITTASFS
Sbjct: 481 RCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFS 527


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 893

 Score =  166 bits (421), Expect = 2e-39
 Identities = 77/167 (46%), Positives = 115/167 (68%)
 Frame = +2

Query: 2   PDGFNGFFFKATWDILGEDVLGAILEFFNSGKLLKEVNCTFISLIPKISSATNFGDFRPI 181
           PDG++  FFK  W ++G +V  A+ EFF SG+LLK+ N T + LIPKI++++   DFRPI
Sbjct: 468 PDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPI 527

Query: 182 SLCNTIYKFISRVLANRLKSVLPSIIDPAQSAFIKGRNIVDNILLAQDLVRGFQRRVHPP 361
           S  NT+YK I+++L +RLK +L  +I P+QSAF+ GR + +N+LLA ++V G+  +    
Sbjct: 528 SCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISS 587

Query: 362 AMALKVDLKKAFDSISWQFLFQAMKRMGFPDFFMKWIRECITTASFS 502
              LKVDL+KAFDS+ W F+  A + +  P+ F+ WI +CI+T  FS
Sbjct: 588 RGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFS 634