BLASTX nr result
ID: Cocculus23_contig00031226
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00031226
(223 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002310258.2| pentatricopeptide repeat-containing family p... 59 5e-07
ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containi... 59 7e-07
gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thal... 59 9e-07
ref|XP_002306009.1| hypothetical protein POPTR_0004s14190g [Popu... 59 9e-07
ref|NP_172798.2| pentatricopeptide repeat-containing protein [Ar... 59 9e-07
ref|XP_006493241.1| PREDICTED: pentatricopeptide repeat-containi... 58 1e-06
ref|XP_006475766.1| PREDICTED: pentatricopeptide repeat-containi... 58 1e-06
ref|XP_006451033.1| hypothetical protein CICLE_v10010814mg, part... 58 1e-06
ref|XP_006436884.1| hypothetical protein CICLE_v10031246mg [Citr... 58 1e-06
ref|XP_007214232.1| hypothetical protein PRUPE_ppa025752mg, part... 57 2e-06
ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [S... 57 2e-06
ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containi... 57 2e-06
ref|XP_006842247.1| hypothetical protein AMTR_s00078p00195340 [A... 57 3e-06
ref|XP_003631155.1| Pentatricopeptide repeat-containing protein ... 57 3e-06
ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. l... 57 3e-06
gb|EXC04260.1| hypothetical protein L484_002345 [Morus notabilis] 57 3e-06
ref|XP_006338411.1| PREDICTED: pentatricopeptide repeat-containi... 57 3e-06
ref|XP_007038050.1| Tetratricopeptide repeat (TPR)-like superfam... 57 3e-06
ref|XP_007030706.1| Pentatricopeptide repeat (PPR) superfamily p... 57 3e-06
ref|XP_007030705.1| Pentatricopeptide repeat superfamily protein... 57 3e-06
>ref|XP_002310258.2| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|550334781|gb|EEE90708.2|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 666
Score = 59.3 bits (142), Expect = 5e-07
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = -3
Query: 218 HGLAMEALNLFFEMQLVGISPDSVTLTHVLCACSHVGMVTMGLQVLYEMSKVSAIC 51
HG + EA++LF ++ VG+ PDSVT VL ACSH G+V +G +SKV IC
Sbjct: 450 HGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQIC 505
>ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED:
pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED:
pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 58.9 bits (141), Expect = 7e-07
Identities = 27/55 (49%), Positives = 35/55 (63%)
Frame = -3
Query: 218 HGLAMEALNLFFEMQLVGISPDSVTLTHVLCACSHVGMVTMGLQVLYEMSKVSAI 54
HG A++LFFEMQ + P+SVT T+VLCACSH G+V G +EM V +
Sbjct: 439 HGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGV 493
>gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
Length = 421
Score = 58.5 bits (140), Expect = 9e-07
Identities = 29/50 (58%), Positives = 32/50 (64%)
Frame = -3
Query: 221 AHGLAMEALNLFFEMQLVGISPDSVTLTHVLCACSHVGMVTMGLQVLYEM 72
AHG EALNLF EM+ GISPD VT VLCAC H+G+V GL M
Sbjct: 214 AHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSM 263
>ref|XP_002306009.1| hypothetical protein POPTR_0004s14190g [Populus trichocarpa]
gi|222848973|gb|EEE86520.1| hypothetical protein
POPTR_0004s14190g [Populus trichocarpa]
Length = 870
Score = 58.5 bits (140), Expect = 9e-07
Identities = 27/52 (51%), Positives = 33/52 (63%)
Frame = -3
Query: 218 HGLAMEALNLFFEMQLVGISPDSVTLTHVLCACSHVGMVTMGLQVLYEMSKV 63
HG+ EAL FF M +GI PD V +T VL ACSH G+V GL + Y + KV
Sbjct: 656 HGMGKEALGTFFHMIELGIKPDHVIITTVLSACSHAGLVDEGLNIFYSIEKV 707
>ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|110741720|dbj|BAE98806.1| hypothetical protein
[Arabidopsis thaliana] gi|332190892|gb|AEE29013.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 474
Score = 58.5 bits (140), Expect = 9e-07
Identities = 29/50 (58%), Positives = 32/50 (64%)
Frame = -3
Query: 221 AHGLAMEALNLFFEMQLVGISPDSVTLTHVLCACSHVGMVTMGLQVLYEM 72
AHG EALNLF EM+ GISPD VT VLCAC H+G+V GL M
Sbjct: 267 AHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSM 316
>ref|XP_006493241.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Citrus sinensis]
Length = 519
Score = 58.2 bits (139), Expect = 1e-06
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = -3
Query: 218 HGLAMEALNLFFEMQLVGISPDSVTLTHVLCACSHVGMVTMGLQVLYEMSK 66
HG EA+ +F++MQ+ GI PD+VTL VL ACSH G++ G ++ Y M +
Sbjct: 309 HGCGEEAVKMFWQMQMSGIKPDNVTLIAVLTACSHAGLIEKGKEIFYNMRR 359
>ref|XP_006475766.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like isoform X1 [Citrus sinensis]
Length = 840
Score = 58.2 bits (139), Expect = 1e-06
Identities = 27/49 (55%), Positives = 35/49 (71%)
Frame = -3
Query: 218 HGLAMEALNLFFEMQLVGISPDSVTLTHVLCACSHVGMVTMGLQVLYEM 72
HGLA+EAL LF +Q GI PDS+T T++L ACSH G+V GL++ M
Sbjct: 634 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 682
>ref|XP_006451033.1| hypothetical protein CICLE_v10010814mg, partial [Citrus clementina]
gi|557554259|gb|ESR64273.1| hypothetical protein
CICLE_v10010814mg, partial [Citrus clementina]
Length = 830
Score = 58.2 bits (139), Expect = 1e-06
Identities = 27/49 (55%), Positives = 35/49 (71%)
Frame = -3
Query: 218 HGLAMEALNLFFEMQLVGISPDSVTLTHVLCACSHVGMVTMGLQVLYEM 72
HGLA+EAL LF +Q GI PDS+T T++L ACSH G+V GL++ M
Sbjct: 634 HGLAVEALALFKNLQQKGIDPDSITFTNILNACSHAGLVNEGLELFVGM 682
>ref|XP_006436884.1| hypothetical protein CICLE_v10031246mg [Citrus clementina]
gi|557539080|gb|ESR50124.1| hypothetical protein
CICLE_v10031246mg [Citrus clementina]
Length = 519
Score = 58.2 bits (139), Expect = 1e-06
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = -3
Query: 218 HGLAMEALNLFFEMQLVGISPDSVTLTHVLCACSHVGMVTMGLQVLYEMSK 66
HG EA+ +F++MQ+ GI PD+VTL VL ACSH G++ G ++ Y M +
Sbjct: 309 HGCGEEAVKMFWQMQMSGIKPDNVTLIAVLTACSHAGLIEKGKEIFYNMRR 359
>ref|XP_007214232.1| hypothetical protein PRUPE_ppa025752mg, partial [Prunus persica]
gi|462410097|gb|EMJ15431.1| hypothetical protein
PRUPE_ppa025752mg, partial [Prunus persica]
Length = 863
Score = 57.4 bits (137), Expect = 2e-06
Identities = 24/55 (43%), Positives = 36/55 (65%)
Frame = -3
Query: 218 HGLAMEALNLFFEMQLVGISPDSVTLTHVLCACSHVGMVTMGLQVLYEMSKVSAI 54
HG EAL +FF M +G+ PD+V +T VL ACSH G+V GL++ Y + ++ +
Sbjct: 635 HGRGEEALKVFFHMLDLGVKPDNVIITAVLSACSHAGLVNEGLKIFYSIEEIHGV 689
>ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
gi|241926898|gb|EES00043.1| hypothetical protein
SORBIDRAFT_03g001460 [Sorghum bicolor]
Length = 741
Score = 57.4 bits (137), Expect = 2e-06
Identities = 27/51 (52%), Positives = 35/51 (68%)
Frame = -3
Query: 218 HGLAMEALNLFFEMQLVGISPDSVTLTHVLCACSHVGMVTMGLQVLYEMSK 66
HG +AL+LF EM+L GI+PD +T +VLCACSH+G+V G MSK
Sbjct: 507 HGRGRDALDLFEEMKLEGIAPDHITFINVLCACSHMGLVDRGWFYFRAMSK 557
>ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
[Vitis vinifera]
Length = 643
Score = 57.4 bits (137), Expect = 2e-06
Identities = 29/55 (52%), Positives = 34/55 (61%)
Frame = -3
Query: 218 HGLAMEALNLFFEMQLVGISPDSVTLTHVLCACSHVGMVTMGLQVLYEMSKVSAI 54
HG EA+ F +MQ +G+SPD TLT VL ACSH G+V GL MSKV I
Sbjct: 350 HGYGREAIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGI 404
>ref|XP_006842247.1| hypothetical protein AMTR_s00078p00195340 [Amborella trichopoda]
gi|548844296|gb|ERN03922.1| hypothetical protein
AMTR_s00078p00195340 [Amborella trichopoda]
Length = 907
Score = 57.0 bits (136), Expect = 3e-06
Identities = 29/51 (56%), Positives = 33/51 (64%)
Frame = -3
Query: 218 HGLAMEALNLFFEMQLVGISPDSVTLTHVLCACSHVGMVTMGLQVLYEMSK 66
HG A EAL+LF EM+ GI PD +T VL ACSHVGMV G + MSK
Sbjct: 656 HGYAKEALDLFEEMKKEGIKPDHITYVAVLSACSHVGMVERGRFYFHSMSK 706
>ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525177|gb|AET05631.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 785
Score = 57.0 bits (136), Expect = 3e-06
Identities = 28/51 (54%), Positives = 35/51 (68%)
Frame = -3
Query: 218 HGLAMEALNLFFEMQLVGISPDSVTLTHVLCACSHVGMVTMGLQVLYEMSK 66
HGL +EAL+LF E+Q +G+ PD VTL VL ACSH G+VT G MS+
Sbjct: 492 HGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQ 542
>ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis
lyrata subsp. lyrata]
Length = 471
Score = 57.0 bits (136), Expect = 3e-06
Identities = 28/50 (56%), Positives = 32/50 (64%)
Frame = -3
Query: 221 AHGLAMEALNLFFEMQLVGISPDSVTLTHVLCACSHVGMVTMGLQVLYEM 72
AHG EAL+LF EM+ GISPD VT VLCAC H+G+V GL M
Sbjct: 264 AHGHGTEALDLFHEMKNCGISPDKVTFVGVLCACKHMGLVEDGLAYFNSM 313
>gb|EXC04260.1| hypothetical protein L484_002345 [Morus notabilis]
Length = 1455
Score = 56.6 bits (135), Expect = 3e-06
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = -3
Query: 218 HGLAMEALNLFFEMQLVGISPDSVTLTHVLCACSHVGMVTMGLQVLYEMSKVSAI 54
HG+ EAL +F M +G+ PD V +T VL ACSH G+++ GL+ Y + KV I
Sbjct: 1028 HGMGKEALGIFSHMLEMGLKPDHVIITAVLSACSHAGLMSEGLETFYSIEKVHGI 1082
>ref|XP_006338411.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Solanum tuberosum]
Length = 602
Score = 56.6 bits (135), Expect = 3e-06
Identities = 25/51 (49%), Positives = 31/51 (60%)
Frame = -3
Query: 218 HGLAMEALNLFFEMQLVGISPDSVTLTHVLCACSHVGMVTMGLQVLYEMSK 66
HG +AL LFF M+ G PD VTL +LCAC+H G+V G+ Y M K
Sbjct: 392 HGRGKKALELFFRMKQEGFVPDKVTLVGILCACNHTGLVDEGILFFYSMEK 442
>ref|XP_007038050.1| Tetratricopeptide repeat (TPR)-like superfamily protein, putative
[Theobroma cacao] gi|508775295|gb|EOY22551.1|
Tetratricopeptide repeat (TPR)-like superfamily protein,
putative [Theobroma cacao]
Length = 507
Score = 56.6 bits (135), Expect = 3e-06
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = -3
Query: 218 HGLAMEALNLFFEMQLVGISPDSVTLTHVLCACSHVGMVTMGLQVLYEMSKVSAI 54
HG +EA++ F EMQ GI PD +TL VL ACSH G+V G ++ M KV I
Sbjct: 308 HGYGIEAIDRFMEMQGFGIKPDGITLIAVLSACSHSGLVVKGKEIFQSMRKVYEI 362
>ref|XP_007030706.1| Pentatricopeptide repeat (PPR) superfamily protein isoform 2
[Theobroma cacao] gi|508719311|gb|EOY11208.1|
Pentatricopeptide repeat (PPR) superfamily protein
isoform 2 [Theobroma cacao]
Length = 1072
Score = 56.6 bits (135), Expect = 3e-06
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = -3
Query: 218 HGLAMEALNLFFEMQLVGISPDSVTLTHVLCACSHVGMVTMGLQVLYEMSK 66
HG +EA++LF +M+ VG++P+ VTL VL ACSHVG+V GL MSK
Sbjct: 779 HGYGIEAIDLFEKMKQVGVTPNPVTLVGVLSACSHVGLVDEGLDYFDSMSK 829
>ref|XP_007030705.1| Pentatricopeptide repeat superfamily protein isoform 1 [Theobroma
cacao] gi|508719310|gb|EOY11207.1| Pentatricopeptide
repeat superfamily protein isoform 1 [Theobroma cacao]
Length = 1389
Score = 56.6 bits (135), Expect = 3e-06
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = -3
Query: 218 HGLAMEALNLFFEMQLVGISPDSVTLTHVLCACSHVGMVTMGLQVLYEMSK 66
HG +EA++LF +M+ VG++P+ VTL VL ACSHVG+V GL MSK
Sbjct: 779 HGYGIEAIDLFEKMKQVGVTPNPVTLVGVLSACSHVGLVDEGLDYFDSMSK 829