BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00030912
         (640 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAZ03868.1| RNA polymerase alpha chain [Ranunculus macranthus]     383   e-104
ref|YP_001004218.1| RNA polymerase alpha subunit [Ranunculus mac...   383   e-104
ref|YP_740682.1| RNA polymerase alpha subunit [Nandina domestica...   381   e-104
gb|ADD31217.1| RNA polymerase alpha subunit protein [Meliosma af...   378   e-103
gb|ADD31229.1| RNA polymerase alpha subunit protein [Heuchera sa...   378   e-103
ref|YP_002836122.1| RNA polymerase alpha subunit [Megaleranthis ...   377   e-102
ref|YP_008993466.1| RNA polymerase alpha subunit (chloroplast) [...   376   e-102
ref|YP_005097906.1| RNA polymerase alpha subunit (chloroplast) [...   375   e-102
gb|ADD31223.1| RNA polymerase alpha subunit protein [Berberidops...   375   e-102
ref|YP_008993380.1| RNA polymerase alpha subunit (chloroplast) [...   375   e-102
ref|YP_008993294.1| RNA polymerase alpha subunit (chloroplast) [...   375   e-102
ref|YP_007474568.1| RNA polymerase alpha subunit (chloroplast) [...   375   e-102
ref|YP_007474402.1| RNA polymerase alpha subunit (chloroplast) [...   375   e-102
ref|YP_008993724.1| RNA polymerase alpha subunit (chloroplast) [...   374   e-101
ref|YP_004563899.1| RNA polymerase alpha subunit [Nelumbo lutea]...   374   e-101
ref|YP_008993896.1| RNA polymerase alpha subunit (chloroplast) [...   374   e-101
ref|YP_008993810.1| RNA polymerase alpha subunit (chloroplast) [...   373   e-101
ref|YP_004564135.1| RNA polymerase alpha subunit [Nelumbo nucife...   373   e-101
ref|YP_001294216.1| RNA polymerase alpha subunit [Buxus microphy...   373   e-101
ref|YP_319795.1| RNA polymerase alpha subunit [Acorus calamus] g...   372   e-101

>gb|AAZ03868.1| RNA polymerase alpha chain [Ranunculus macranthus]
          Length = 339

 Score =  383 bits (983), Expect = e-104
 Identities = 190/214 (88%), Positives = 198/214 (92%), Gaps = 1/214 (0%)
 Frame = +1

Query: 1   RDASICVKGPRCVTAQDIILPPSVEIVDTTQHIASLTEPIDFCIGLQIERNRGYRMKTPN 180
           RDASICVKGP  VTAQDII PPSVEIVDTTQHIASLTEP+DFCIGLQIE NRGYRMKTPN
Sbjct: 104 RDASICVKGPGYVTAQDIISPPSVEIVDTTQHIASLTEPVDFCIGLQIESNRGYRMKTPN 163

Query: 181 NAQNGSYPIDAVFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 360
           NAQ GSYPIDAVFMPVRNAN+SIHSYGNGNE QEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NAQKGSYPIDAVFMPVRNANHSIHSYGNGNENQEILFLEIWTNGSLTPKEALYEASRNLI 223

Query: 361 DLFIPFLHAEEQDINFEDNQKK-VTLPLFTFHDGLAKLRKNKKEIALKLIFIDQLELPSR 537
           DLFIPFLHAEEQD N +DNQK  VTLP FTFHDG  KL+KNKKEI LK IFIDQ ELPSR
Sbjct: 224 DLFIPFLHAEEQDQNLKDNQKNGVTLPFFTFHDGFDKLKKNKKEIELKCIFIDQSELPSR 283

Query: 538 TYNCLKKSNIHTLLDLLNKSQEDLMQIEHFRIED 639
           TYNCLK++NIHTLLDLLNKSQEDLM+IEHFRIED
Sbjct: 284 TYNCLKRANIHTLLDLLNKSQEDLMKIEHFRIED 317


>ref|YP_001004218.1| RNA polymerase alpha subunit [Ranunculus macranthus]
           gi|158514028|sp|A1XGS0.1|RPOA_RANMC RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|85540836|gb|ABC70788.1| RNA polymerase alpha subunit
           [Ranunculus macranthus]
          Length = 346

 Score =  383 bits (983), Expect = e-104
 Identities = 190/214 (88%), Positives = 198/214 (92%), Gaps = 1/214 (0%)
 Frame = +1

Query: 1   RDASICVKGPRCVTAQDIILPPSVEIVDTTQHIASLTEPIDFCIGLQIERNRGYRMKTPN 180
           RDASICVKGP  VTAQDII PPSVEIVDTTQHIASLTEP+DFCIGLQIE NRGYRMKTPN
Sbjct: 104 RDASICVKGPGYVTAQDIISPPSVEIVDTTQHIASLTEPVDFCIGLQIESNRGYRMKTPN 163

Query: 181 NAQNGSYPIDAVFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 360
           NAQ GSYPIDAVFMPVRNAN+SIHSYGNGNE QEILFLEIWTNGSLTPKEAL+EASRNLI
Sbjct: 164 NAQKGSYPIDAVFMPVRNANHSIHSYGNGNENQEILFLEIWTNGSLTPKEALYEASRNLI 223

Query: 361 DLFIPFLHAEEQDINFEDNQKK-VTLPLFTFHDGLAKLRKNKKEIALKLIFIDQLELPSR 537
           DLFIPFLHAEEQD N +DNQK  VTLP FTFHDG  KL+KNKKEI LK IFIDQ ELPSR
Sbjct: 224 DLFIPFLHAEEQDQNLKDNQKNGVTLPFFTFHDGFDKLKKNKKEIELKCIFIDQSELPSR 283

Query: 538 TYNCLKKSNIHTLLDLLNKSQEDLMQIEHFRIED 639
           TYNCLK++NIHTLLDLLNKSQEDLM+IEHFRIED
Sbjct: 284 TYNCLKRANIHTLLDLLNKSQEDLMKIEHFRIED 317


>ref|YP_740682.1| RNA polymerase alpha subunit [Nandina domestica]
           gi|122165930|sp|Q09FS9.1|RPOA_NANDO RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|114054503|gb|ABI49896.1| RNA polymerase alpha subunit
           [Nandina domestica]
          Length = 338

 Score =  381 bits (979), Expect = e-104
 Identities = 190/212 (89%), Positives = 198/212 (93%)
 Frame = +1

Query: 4   DASICVKGPRCVTAQDIILPPSVEIVDTTQHIASLTEPIDFCIGLQIERNRGYRMKTPNN 183
           DASICVKGP  +TA+DII PPSVEIVDTTQHIASLTEP D CIGLQIERNRGYRMKTPN 
Sbjct: 105 DASICVKGPINITAKDIISPPSVEIVDTTQHIASLTEPFDLCIGLQIERNRGYRMKTPNK 164

Query: 184 AQNGSYPIDAVFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID 363
           AQNGSYPIDAVFMPVRNAN+SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID
Sbjct: 165 AQNGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID 224

Query: 364 LFIPFLHAEEQDINFEDNQKKVTLPLFTFHDGLAKLRKNKKEIALKLIFIDQLELPSRTY 543
           LFIPFLHAEEQDI  EDNQ +VTLP FTFHDGLAKL+K K EIALK IFIDQ ELPSRTY
Sbjct: 225 LFIPFLHAEEQDIILEDNQNRVTLPFFTFHDGLAKLKK-KNEIALKFIFIDQSELPSRTY 283

Query: 544 NCLKKSNIHTLLDLLNKSQEDLMQIEHFRIED 639
           NCLKKSNI+TLLDLLNKSQEDL++IEHFRIED
Sbjct: 284 NCLKKSNINTLLDLLNKSQEDLLKIEHFRIED 315


>gb|ADD31217.1| RNA polymerase alpha subunit protein [Meliosma aff. cuneifolia
           Moore 333]
          Length = 337

 Score =  378 bits (971), Expect = e-103
 Identities = 186/213 (87%), Positives = 196/213 (92%)
 Frame = +1

Query: 1   RDASICVKGPRCVTAQDIILPPSVEIVDTTQHIASLTEPIDFCIGLQIERNRGYRMKTPN 180
           RDASICV+GP  VTAQDII P SVEIVDTTQHIASLTEPI+ CIGLQIERN GYRMKTP 
Sbjct: 104 RDASICVRGPGYVTAQDIISPSSVEIVDTTQHIASLTEPINLCIGLQIERNHGYRMKTPK 163

Query: 181 NAQNGSYPIDAVFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 360
           N+Q+GSYPIDAVFMPVRNAN+SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI
Sbjct: 164 NSQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223

Query: 361 DLFIPFLHAEEQDINFEDNQKKVTLPLFTFHDGLAKLRKNKKEIALKLIFIDQLELPSRT 540
           DLFIPFLH EE+DI  EDNQ + T+P FTFHD LAKLRKNKKEIALK IFIDQ ELP RT
Sbjct: 224 DLFIPFLHTEEEDIIIEDNQNRFTVPFFTFHDRLAKLRKNKKEIALKFIFIDQSELPPRT 283

Query: 541 YNCLKKSNIHTLLDLLNKSQEDLMQIEHFRIED 639
           YNCLK+SNIHTLLDLLNKSQEDLM+IEHFRIED
Sbjct: 284 YNCLKRSNIHTLLDLLNKSQEDLMRIEHFRIED 316


>gb|ADD31229.1| RNA polymerase alpha subunit protein [Heuchera sanguinea]
          Length = 337

 Score =  378 bits (970), Expect = e-103
 Identities = 186/213 (87%), Positives = 197/213 (92%)
 Frame = +1

Query: 1   RDASICVKGPRCVTAQDIILPPSVEIVDTTQHIASLTEPIDFCIGLQIERNRGYRMKTPN 180
           R+ASICV GP  VTAQDII PPSVEIVD TQHIASLTEPID CIGLQIE+NRGYR+KTPN
Sbjct: 104 RNASICVSGPGYVTAQDIISPPSVEIVDNTQHIASLTEPIDLCIGLQIEKNRGYRIKTPN 163

Query: 181 NAQNGSYPIDAVFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 360
           N Q+GSYPIDAVFMPVRNAN+SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI
Sbjct: 164 NFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223

Query: 361 DLFIPFLHAEEQDINFEDNQKKVTLPLFTFHDGLAKLRKNKKEIALKLIFIDQLELPSRT 540
           DLFIPFLHAEE++++ EDNQ KVTLPLFTFHD LAKLRKNKKEIALK IFIDQ ELP R 
Sbjct: 224 DLFIPFLHAEEENLHLEDNQHKVTLPLFTFHDRLAKLRKNKKEIALKYIFIDQSELPPRI 283

Query: 541 YNCLKKSNIHTLLDLLNKSQEDLMQIEHFRIED 639
           Y CLK+SNIHTLLDLLN SQEDLM+IEHFRIED
Sbjct: 284 YTCLKRSNIHTLLDLLNNSQEDLMKIEHFRIED 316


>ref|YP_002836122.1| RNA polymerase alpha subunit [Megaleranthis saniculifolia]
           gi|226933914|gb|ACO92047.1| RNA polymerase alpha subunit
           [Megaleranthis saniculifolia]
          Length = 328

 Score =  377 bits (969), Expect = e-102
 Identities = 187/213 (87%), Positives = 195/213 (91%)
 Frame = +1

Query: 1   RDASICVKGPRCVTAQDIILPPSVEIVDTTQHIASLTEPIDFCIGLQIERNRGYRMKTPN 180
           RDASICVKGP  VTAQDII PPSVEIVD TQHIASLTEPID CI LQIERNRGYRMKTPN
Sbjct: 104 RDASICVKGPGYVTAQDIISPPSVEIVDITQHIASLTEPIDLCIELQIERNRGYRMKTPN 163

Query: 181 NAQNGSYPIDAVFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 360
           NAQ  SYPIDAVFMPVRNAN+SIHSYGNGNEKQEILFLEIWT+GSLTPKEAL+EASRNLI
Sbjct: 164 NAQERSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTDGSLTPKEALYEASRNLI 223

Query: 361 DLFIPFLHAEEQDINFEDNQKKVTLPLFTFHDGLAKLRKNKKEIALKLIFIDQLELPSRT 540
           DLFIPFLHAEEQD   EDNQ +VTLP FTFHDGL K+RKNKKEI LK IFIDQ ELPSRT
Sbjct: 224 DLFIPFLHAEEQDTKLEDNQSRVTLPFFTFHDGLDKVRKNKKEIELKCIFIDQSELPSRT 283

Query: 541 YNCLKKSNIHTLLDLLNKSQEDLMQIEHFRIED 639
           YNCLK+ NIHTLLDLLNKSQEDLM++EHFRIED
Sbjct: 284 YNCLKRFNIHTLLDLLNKSQEDLMKMEHFRIED 316


>ref|YP_008993466.1| RNA polymerase alpha subunit (chloroplast) [Magnolia kobus]
          Length = 337

 Score =  376 bits (966), Expect = e-102
 Identities = 186/213 (87%), Positives = 196/213 (92%)
 Frame = +1

Query: 1   RDASICVKGPRCVTAQDIILPPSVEIVDTTQHIASLTEPIDFCIGLQIERNRGYRMKTPN 180
           RDASICV+GPR VTAQDII PPSVEIVDTTQHIASLTEPID CI LQIER+RGYRMKTPN
Sbjct: 104 RDASICVRGPRYVTAQDIIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPN 163

Query: 181 NAQNGSYPIDAVFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 360
           N Q+GSYPIDAV MPVRNAN+SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI
Sbjct: 164 NYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223

Query: 361 DLFIPFLHAEEQDINFEDNQKKVTLPLFTFHDGLAKLRKNKKEIALKLIFIDQLELPSRT 540
           DLFIPFLHAEEQDIN EDNQ + T+PLF FHD LA +RKNKK IALK IFIDQ ELP RT
Sbjct: 224 DLFIPFLHAEEQDINLEDNQNRFTVPLFPFHDRLANIRKNKKGIALKCIFIDQSELPPRT 283

Query: 541 YNCLKKSNIHTLLDLLNKSQEDLMQIEHFRIED 639
           YNCLK+SNIHTLLDLL+ SQEDLM+IEHFRIED
Sbjct: 284 YNCLKRSNIHTLLDLLSNSQEDLMRIEHFRIED 316


>ref|YP_005097906.1| RNA polymerase alpha subunit (chloroplast) [Colocasia esculenta]
           gi|340536672|gb|AEK48439.1| RNA polymerase alpha subunit
           (chloroplast) [Colocasia esculenta]
           gi|340536759|gb|AEK48525.1| RNA polymerase alpha subunit
           (chloroplast) [Colocasia esculenta]
          Length = 339

 Score =  375 bits (963), Expect = e-102
 Identities = 182/213 (85%), Positives = 201/213 (94%)
 Frame = +1

Query: 1   RDASICVKGPRCVTAQDIILPPSVEIVDTTQHIASLTEPIDFCIGLQIERNRGYRMKTPN 180
           RDASICVKGPR +TAQDIILPPSVEIVDTTQHIA+LTEP+D CIGLQI+R+RGYRM+  N
Sbjct: 104 RDASICVKGPRYITAQDIILPPSVEIVDTTQHIATLTEPLDLCIGLQIQRDRGYRMRPTN 163

Query: 181 NAQNGSYPIDAVFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 360
           N+Q+GSYPIDAV MPVRNAN+SI+SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI
Sbjct: 164 NSQDGSYPIDAVSMPVRNANHSIYSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223

Query: 361 DLFIPFLHAEEQDINFEDNQKKVTLPLFTFHDGLAKLRKNKKEIALKLIFIDQLELPSRT 540
           DLFIPFLHAEE+DINFE+N+ + TLPLFTFHD LA L+KNKKEIALK IFIDQ ELPSRT
Sbjct: 224 DLFIPFLHAEEKDINFEENKSRFTLPLFTFHDRLANLKKNKKEIALKCIFIDQSELPSRT 283

Query: 541 YNCLKKSNIHTLLDLLNKSQEDLMQIEHFRIED 639
           YNCLK+SNIHTLLDLL+ SQEDLM+IE+FRIED
Sbjct: 284 YNCLKRSNIHTLLDLLSNSQEDLMKIEYFRIED 316


>gb|ADD31223.1| RNA polymerase alpha subunit protein [Berberidopsis corallina]
          Length = 337

 Score =  375 bits (963), Expect = e-102
 Identities = 185/212 (87%), Positives = 195/212 (91%)
 Frame = +1

Query: 4   DASICVKGPRCVTAQDIILPPSVEIVDTTQHIASLTEPIDFCIGLQIERNRGYRMKTPNN 183
           DASICV+GP  VTAQDII PPSVEIVD TQHIASLTEPID CIGLQIERNRGYR+KT NN
Sbjct: 105 DASICVRGPGYVTAQDIISPPSVEIVDNTQHIASLTEPIDLCIGLQIERNRGYRIKTLNN 164

Query: 184 AQNGSYPIDAVFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID 363
            Q+GSYPIDAVFMPVRNAN+SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID
Sbjct: 165 FQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID 224

Query: 364 LFIPFLHAEEQDINFEDNQKKVTLPLFTFHDGLAKLRKNKKEIALKLIFIDQLELPSRTY 543
           LFIPFLHAEE++++ EDNQ K T PLFTFHD LAKLRKNKKEIALK IFIDQLELP R Y
Sbjct: 225 LFIPFLHAEEENLHLEDNQHKATFPLFTFHDRLAKLRKNKKEIALKYIFIDQLELPPRIY 284

Query: 544 NCLKKSNIHTLLDLLNKSQEDLMQIEHFRIED 639
           NCLK+SNIHTL DLLN SQEDLM+IEHFRIED
Sbjct: 285 NCLKRSNIHTLSDLLNNSQEDLMKIEHFRIED 316


>ref|YP_008993380.1| RNA polymerase alpha subunit (chloroplast) [Magnolia pyramidata]
          Length = 337

 Score =  375 bits (962), Expect = e-102
 Identities = 185/213 (86%), Positives = 195/213 (91%)
 Frame = +1

Query: 1   RDASICVKGPRCVTAQDIILPPSVEIVDTTQHIASLTEPIDFCIGLQIERNRGYRMKTPN 180
           RDASICV+GPR VTAQDII PPSVEIVDTTQHIASLTEPID CI LQIER+RGYRMKTPN
Sbjct: 104 RDASICVRGPRYVTAQDIIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPN 163

Query: 181 NAQNGSYPIDAVFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 360
           N Q+GSYPIDAV MPVRNAN+SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI
Sbjct: 164 NYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223

Query: 361 DLFIPFLHAEEQDINFEDNQKKVTLPLFTFHDGLAKLRKNKKEIALKLIFIDQLELPSRT 540
           DLFIPFLHAEEQDIN EDN  + T+P FTFHD LA +RKNKK IALK IFIDQ ELP RT
Sbjct: 224 DLFIPFLHAEEQDINLEDNPNRFTVPFFTFHDRLANIRKNKKGIALKCIFIDQSELPPRT 283

Query: 541 YNCLKKSNIHTLLDLLNKSQEDLMQIEHFRIED 639
           YNCLK+SNIHTLLDLL+ SQEDLM+IEHFRIED
Sbjct: 284 YNCLKRSNIHTLLDLLSNSQEDLMRIEHFRIED 316


>ref|YP_008993294.1| RNA polymerase alpha subunit (chloroplast) [Magnolia dealbata]
          Length = 337

 Score =  375 bits (962), Expect = e-102
 Identities = 185/213 (86%), Positives = 195/213 (91%)
 Frame = +1

Query: 1   RDASICVKGPRCVTAQDIILPPSVEIVDTTQHIASLTEPIDFCIGLQIERNRGYRMKTPN 180
           RDASICV+GPR VTAQDII PPSVEIVDTTQHIASLTEPID CI LQIER+RGYRMKTPN
Sbjct: 104 RDASICVRGPRYVTAQDIIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPN 163

Query: 181 NAQNGSYPIDAVFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 360
           N Q+GSYPIDAV MPVRNAN+SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI
Sbjct: 164 NYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223

Query: 361 DLFIPFLHAEEQDINFEDNQKKVTLPLFTFHDGLAKLRKNKKEIALKLIFIDQLELPSRT 540
           DLFIPFLHAEEQDIN EDN  + T+P FTFHD LA +RKNKK IALK IFIDQ ELP RT
Sbjct: 224 DLFIPFLHAEEQDINLEDNPNRFTVPFFTFHDRLANIRKNKKGIALKYIFIDQSELPPRT 283

Query: 541 YNCLKKSNIHTLLDLLNKSQEDLMQIEHFRIED 639
           YNCLK+SNIHTLLDLL+ SQEDLM+IEHFRIED
Sbjct: 284 YNCLKRSNIHTLLDLLSNSQEDLMRIEHFRIED 316


>ref|YP_007474568.1| RNA polymerase alpha subunit (chloroplast) [Magnolia grandiflora]
           gi|372862875|gb|AEX98951.1| RNA polymerase alpha subunit
           (chloroplast) [Magnolia grandiflora]
           gi|372863045|gb|AEX99119.1| RNA polymerase alpha subunit
           (chloroplast) [Magnolia grandiflora]
          Length = 337

 Score =  375 bits (962), Expect = e-102
 Identities = 185/213 (86%), Positives = 195/213 (91%)
 Frame = +1

Query: 1   RDASICVKGPRCVTAQDIILPPSVEIVDTTQHIASLTEPIDFCIGLQIERNRGYRMKTPN 180
           RDASICV+GPR VTAQDII PPSVEIVDTTQHIASLTEPID CI LQIER+RGYRMKTPN
Sbjct: 104 RDASICVRGPRYVTAQDIIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPN 163

Query: 181 NAQNGSYPIDAVFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 360
           N Q+GSYPIDAV MPVRNAN+SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI
Sbjct: 164 NYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223

Query: 361 DLFIPFLHAEEQDINFEDNQKKVTLPLFTFHDGLAKLRKNKKEIALKLIFIDQLELPSRT 540
           DLFIPFLHAEEQDIN EDN  + T+P FTFHD LA +RKNKK IALK IFIDQ ELP RT
Sbjct: 224 DLFIPFLHAEEQDINLEDNPNRFTVPFFTFHDRLANIRKNKKGIALKCIFIDQSELPPRT 283

Query: 541 YNCLKKSNIHTLLDLLNKSQEDLMQIEHFRIED 639
           YNCLK+SNIHTLLDLL+ SQEDLM+IEHFRIED
Sbjct: 284 YNCLKRSNIHTLLDLLSNSQEDLMRIEHFRIED 316


>ref|YP_007474402.1| RNA polymerase alpha subunit (chloroplast) [Magnolia officinalis]
           gi|452848803|ref|YP_007474484.1| RNA polymerase alpha
           subunit (chloroplast) [Magnolia officinalis subsp.
           biloba] gi|619275767|ref|YP_009026913.1| RNA polymerase
           alpha subunit [Magnolia tripetala]
           gi|372862453|gb|AEX98534.1| RNA polymerase alpha subunit
           (chloroplast) [Magnolia officinalis]
           gi|372862536|gb|AEX98616.1| RNA polymerase alpha subunit
           (chloroplast) [Magnolia officinalis subsp. biloba]
           gi|372862621|gb|AEX98700.1| RNA polymerase alpha subunit
           (chloroplast) [Magnolia officinalis subsp. biloba]
           gi|372862706|gb|AEX98784.1| RNA polymerase alpha subunit
           (chloroplast) [Magnolia officinalis subsp. biloba]
           gi|608608435|gb|AHW51989.1| RNA polymerase alpha subunit
           [Magnolia tripetala]
          Length = 337

 Score =  375 bits (962), Expect = e-102
 Identities = 185/213 (86%), Positives = 195/213 (91%)
 Frame = +1

Query: 1   RDASICVKGPRCVTAQDIILPPSVEIVDTTQHIASLTEPIDFCIGLQIERNRGYRMKTPN 180
           RDASICV+GPR VTAQDII PPSVEIVDTTQHIASLTEPID CI LQIER+RGYRMKTPN
Sbjct: 104 RDASICVRGPRYVTAQDIIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPN 163

Query: 181 NAQNGSYPIDAVFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 360
           N Q+GSYPIDAV MPVRNAN+SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI
Sbjct: 164 NYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223

Query: 361 DLFIPFLHAEEQDINFEDNQKKVTLPLFTFHDGLAKLRKNKKEIALKLIFIDQLELPSRT 540
           DLFIPFLHAEEQDIN EDN  + T+P FTFHD LA +RKNKK IALK IFIDQ ELP RT
Sbjct: 224 DLFIPFLHAEEQDINLEDNPNRFTVPFFTFHDRLANIRKNKKGIALKCIFIDQSELPPRT 283

Query: 541 YNCLKKSNIHTLLDLLNKSQEDLMQIEHFRIED 639
           YNCLK+SNIHTLLDLL+ SQEDLM+IEHFRIED
Sbjct: 284 YNCLKRSNIHTLLDLLSNSQEDLMRIEHFRIED 316


>ref|YP_008993724.1| RNA polymerase alpha subunit (chloroplast) [Magnolia salicifolia]
          Length = 337

 Score =  374 bits (960), Expect = e-101
 Identities = 185/213 (86%), Positives = 195/213 (91%)
 Frame = +1

Query: 1   RDASICVKGPRCVTAQDIILPPSVEIVDTTQHIASLTEPIDFCIGLQIERNRGYRMKTPN 180
           RDASICV+GPR VTAQDII PPSVEIVDTTQHIASLTEPID CI LQIER+RGYRMKTPN
Sbjct: 104 RDASICVRGPRYVTAQDIIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPN 163

Query: 181 NAQNGSYPIDAVFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 360
           N Q+GSYPIDAV MPVRNAN+SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI
Sbjct: 164 NYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223

Query: 361 DLFIPFLHAEEQDINFEDNQKKVTLPLFTFHDGLAKLRKNKKEIALKLIFIDQLELPSRT 540
           DLFIPFLHAEEQDIN EDN  + T+PLF FHD LA +RKNKK IALK IFIDQ ELP RT
Sbjct: 224 DLFIPFLHAEEQDINLEDNPNRFTVPLFPFHDRLANIRKNKKGIALKCIFIDQSELPPRT 283

Query: 541 YNCLKKSNIHTLLDLLNKSQEDLMQIEHFRIED 639
           YNCLK+SNIHTLLDLL+ SQEDLM+IEHFRIED
Sbjct: 284 YNCLKRSNIHTLLDLLSNSQEDLMRIEHFRIED 316


>ref|YP_004563899.1| RNA polymerase alpha subunit [Nelumbo lutea]
           gi|224474167|gb|ACN49356.1| RNA polymerase alpha subunit
           [Nelumbo lutea] gi|383286921|gb|AFH01570.1| RNA
           polymerase alpha subunit (chloroplast) [Nelumbo lutea]
          Length = 339

 Score =  374 bits (960), Expect = e-101
 Identities = 186/215 (86%), Positives = 197/215 (91%), Gaps = 2/215 (0%)
 Frame = +1

Query: 1   RDASICVKGPRCVTAQDIILPPSVEIVDTTQHIASLTEPIDFCIGLQIERNRGYRMKTPN 180
           RDA ICV+GP  VTAQDII PPSVEIVDTTQHIASLTEPID CIGLQIERNRGYRMKTPN
Sbjct: 104 RDAFICVRGPGYVTAQDIISPPSVEIVDTTQHIASLTEPIDLCIGLQIERNRGYRMKTPN 163

Query: 181 NAQNGSYPIDAVFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 360
           N+Q+GSYPIDAVFMPVRNAN+SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI
Sbjct: 164 NSQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223

Query: 361 DLFIPFLHAEEQDINFEDNQKKVTLPLFTFHDGLAKLRKNK--KEIALKLIFIDQLELPS 534
           +LFIPFL A+E+DI  EDNQ KVTLP FTFHD L KLRKNK  KEIALK IFIDQ ELP 
Sbjct: 224 NLFIPFLDAQEEDIQLEDNQNKVTLPFFTFHDRLTKLRKNKKEKEIALKCIFIDQSELPP 283

Query: 535 RTYNCLKKSNIHTLLDLLNKSQEDLMQIEHFRIED 639
           RTYNCLK+SNIHTLLDLLN SQEDLM++EHF+IED
Sbjct: 284 RTYNCLKRSNIHTLLDLLNNSQEDLMKMEHFQIED 318


>ref|YP_008993896.1| RNA polymerase alpha subunit (chloroplast) [Magnolia sprengeri]
          Length = 337

 Score =  374 bits (959), Expect = e-101
 Identities = 185/213 (86%), Positives = 195/213 (91%)
 Frame = +1

Query: 1   RDASICVKGPRCVTAQDIILPPSVEIVDTTQHIASLTEPIDFCIGLQIERNRGYRMKTPN 180
           RDASICV+GPR VTAQDII PPSVEIVDTTQHIASLTEPID CI LQIER+RGYRMKTPN
Sbjct: 104 RDASICVRGPRYVTAQDIIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPN 163

Query: 181 NAQNGSYPIDAVFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 360
           N Q+GSYPIDAV MPVRNAN+SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI
Sbjct: 164 NYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223

Query: 361 DLFIPFLHAEEQDINFEDNQKKVTLPLFTFHDGLAKLRKNKKEIALKLIFIDQLELPSRT 540
           DLFIPFLHAEEQDIN EDN  + T+P FTFHD LA +RKNKK IALK IFIDQ ELP RT
Sbjct: 224 DLFIPFLHAEEQDINLEDNPNRFTVPPFTFHDRLANIRKNKKGIALKCIFIDQSELPPRT 283

Query: 541 YNCLKKSNIHTLLDLLNKSQEDLMQIEHFRIED 639
           YNCLK+SNIHTLLDLL+ SQEDLM+IEHFRIED
Sbjct: 284 YNCLKRSNIHTLLDLLSNSQEDLMRIEHFRIED 316


>ref|YP_008993810.1| RNA polymerase alpha subunit (chloroplast) [Magnolia sinica]
          Length = 337

 Score =  373 bits (957), Expect = e-101
 Identities = 184/213 (86%), Positives = 195/213 (91%)
 Frame = +1

Query: 1   RDASICVKGPRCVTAQDIILPPSVEIVDTTQHIASLTEPIDFCIGLQIERNRGYRMKTPN 180
           RDASICV+GPR VTAQDII PPSVEIVDTTQHIASLTEPID CI LQIER+RGYRMKTPN
Sbjct: 104 RDASICVRGPRYVTAQDIIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPN 163

Query: 181 NAQNGSYPIDAVFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 360
           N Q+GSYPIDAV MPVRNAN+SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI
Sbjct: 164 NYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223

Query: 361 DLFIPFLHAEEQDINFEDNQKKVTLPLFTFHDGLAKLRKNKKEIALKLIFIDQLELPSRT 540
           DLFIPFLHAEEQDI+ EDN  + T+P FTFHD LA +RKNKK IALK IFIDQ ELP RT
Sbjct: 224 DLFIPFLHAEEQDIHLEDNPNRFTVPFFTFHDRLANIRKNKKGIALKCIFIDQSELPPRT 283

Query: 541 YNCLKKSNIHTLLDLLNKSQEDLMQIEHFRIED 639
           YNCLK+SNIHTLLDLL+ SQEDLM+IEHFRIED
Sbjct: 284 YNCLKRSNIHTLLDLLSNSQEDLMRIEHFRIED 316


>ref|YP_004564135.1| RNA polymerase alpha subunit [Nelumbo nucifera]
           gi|224474255|gb|ACN49441.1| RNA polymerase alpha subunit
           [Nelumbo nucifera] gi|290489668|gb|ADD31218.1| RNA
           polymerase alpha subunit protein [Nelumbo nucifera]
           gi|383286829|gb|AFH01479.1| RNA polymerase alpha subunit
           (chloroplast) [Nelumbo nucifera]
           gi|519666943|gb|AGO98555.1| RNA polymerase alpha subunit
           (chloroplast) [Nelumbo nucifera]
          Length = 339

 Score =  373 bits (957), Expect = e-101
 Identities = 186/215 (86%), Positives = 196/215 (91%), Gaps = 2/215 (0%)
 Frame = +1

Query: 1   RDASICVKGPRCVTAQDIILPPSVEIVDTTQHIASLTEPIDFCIGLQIERNRGYRMKTPN 180
           RDA ICV+GP  VTAQDII PPSVEIVDTTQHIASLTEPID CIGLQIERNRGYRMKTPN
Sbjct: 104 RDAFICVRGPGYVTAQDIISPPSVEIVDTTQHIASLTEPIDLCIGLQIERNRGYRMKTPN 163

Query: 181 NAQNGSYPIDAVFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 360
           N+Q+GSYPIDAVFMPVRNAN+SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI
Sbjct: 164 NSQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223

Query: 361 DLFIPFLHAEEQDINFEDNQKKVTLPLFTFHDGLAKLRKNK--KEIALKLIFIDQLELPS 534
           DLFIPFL A+E+DI  EDNQ KVTLP FTFHD L KLRKNK  KEIALK IFIDQ ELP 
Sbjct: 224 DLFIPFLDAQEEDIQLEDNQNKVTLPFFTFHDRLTKLRKNKKEKEIALKCIFIDQSELPP 283

Query: 535 RTYNCLKKSNIHTLLDLLNKSQEDLMQIEHFRIED 639
           RTYNCLK+SNIHTLLDLLN SQEDLM++ HF+IED
Sbjct: 284 RTYNCLKRSNIHTLLDLLNNSQEDLMKMFHFQIED 318


>ref|YP_001294216.1| RNA polymerase alpha subunit [Buxus microphylla]
           gi|172048681|sp|A6MM68.1|RPOA_BUXMI RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|146762316|gb|ABQ45280.1| RNA polymerase alpha subunit
           [Buxus microphylla]
          Length = 337

 Score =  373 bits (957), Expect = e-101
 Identities = 182/213 (85%), Positives = 194/213 (91%)
 Frame = +1

Query: 1   RDASICVKGPRCVTAQDIILPPSVEIVDTTQHIASLTEPIDFCIGLQIERNRGYRMKTPN 180
           RDASICV+GPR VTAQDII PPSVEI+DTTQHIASLTEPID CIGLQIERNRGY MKTP 
Sbjct: 104 RDASICVRGPRHVTAQDIISPPSVEIIDTTQHIASLTEPIDLCIGLQIERNRGYNMKTPK 163

Query: 181 NAQNGSYPIDAVFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 360
           N+Q+G YPIDAVFMPVRNAN+SIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI
Sbjct: 164 NSQDGRYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 223

Query: 361 DLFIPFLHAEEQDINFEDNQKKVTLPLFTFHDGLAKLRKNKKEIALKLIFIDQLELPSRT 540
           DLFIPFLHA E++   +DNQ KV LPLFTFHD LAK RKNKKEI+ + IFIDQ ELP RT
Sbjct: 224 DLFIPFLHANEENFILKDNQNKVALPLFTFHDRLAKQRKNKKEISFQCIFIDQSELPPRT 283

Query: 541 YNCLKKSNIHTLLDLLNKSQEDLMQIEHFRIED 639
           YNCLK+SNIHTLLDLLN SQEDLM+IEHFRIED
Sbjct: 284 YNCLKRSNIHTLLDLLNNSQEDLMKIEHFRIED 316


>ref|YP_319795.1| RNA polymerase alpha subunit [Acorus calamus]
           gi|161622341|ref|YP_001586213.1| RNA polymerase alpha
           subunit [Acorus americanus]
           gi|90101572|sp|Q3V502.1|RPOA_ACOCL RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|69215818|gb|AAZ03865.1| RNA polymerase alpha chain
           [Acorus americanus] gi|74381741|emb|CAI53826.1| RNA
           polymerase alpha subunit [Acorus calamus]
           gi|160369884|gb|ABX38775.1| RNA polymerase alpha subunit
           [Acorus americanus]
          Length = 337

 Score =  372 bits (956), Expect = e-101
 Identities = 181/213 (84%), Positives = 198/213 (92%)
 Frame = +1

Query: 1   RDASICVKGPRCVTAQDIILPPSVEIVDTTQHIASLTEPIDFCIGLQIERNRGYRMKTPN 180
           RDASICV+GPRCVTAQDII PPSVE+VDTTQHIASLTEPID CIGLQI+R+RGYRMKT  
Sbjct: 104 RDASICVRGPRCVTAQDIISPPSVEVVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTK 163

Query: 181 NAQNGSYPIDAVFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI 360
           N+Q+GSYPIDAV MPVRNAN+SIHSYGNGN+KQEILFLEIWTNGSLTPKEALHEASRNLI
Sbjct: 164 NSQDGSYPIDAVSMPVRNANHSIHSYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLI 223

Query: 361 DLFIPFLHAEEQDINFEDNQKKVTLPLFTFHDGLAKLRKNKKEIALKLIFIDQLELPSRT 540
           DLFIPFLHAEE+DINFE+NQ + T+P FTF D LA L+KNKKEIALK IFIDQ ELP RT
Sbjct: 224 DLFIPFLHAEEEDINFEENQNRFTVPPFTFPDRLANLKKNKKEIALKCIFIDQSELPPRT 283

Query: 541 YNCLKKSNIHTLLDLLNKSQEDLMQIEHFRIED 639
           YNCLK+SNIHTLLDLL+ SQEDLM+IE+FRIED
Sbjct: 284 YNCLKRSNIHTLLDLLSNSQEDLMKIEYFRIED 316