BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00030816
         (965 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containi...   298   2e-78
gb|AGZ20103.1| pentatricopeptide repeat-containing protein [Came...   278   3e-72
ref|XP_007051704.1| Pentatricopeptide repeat superfamily protein...   267   5e-69
ref|XP_006491189.1| PREDICTED: pentatricopeptide repeat-containi...   246   8e-63
ref|XP_002320827.2| pentatricopeptide repeat-containing family p...   233   1e-58
gb|EXB51620.1| hypothetical protein L484_012912 [Morus notabilis]     228   4e-57
ref|XP_004301483.1| PREDICTED: pentatricopeptide repeat-containi...   228   4e-57
ref|XP_002511922.1| pentatricopeptide repeat-containing protein,...   222   2e-55
ref|XP_006339632.1| PREDICTED: pentatricopeptide repeat-containi...   222   2e-55
ref|XP_004308336.1| PREDICTED: pentatricopeptide repeat-containi...   221   3e-55
ref|XP_007160491.1| hypothetical protein PHAVU_002G326200g [Phas...   220   6e-55
ref|XP_004231193.1| PREDICTED: pentatricopeptide repeat-containi...   220   8e-55
ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containi...   219   2e-54
ref|XP_004300812.1| PREDICTED: pentatricopeptide repeat-containi...   212   2e-52
ref|XP_004503311.1| PREDICTED: pentatricopeptide repeat-containi...   211   4e-52
ref|XP_004503310.1| PREDICTED: pentatricopeptide repeat-containi...   211   4e-52
ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containi...   206   9e-51
ref|XP_006397795.1| hypothetical protein EUTSA_v10001319mg [Eutr...   206   1e-50
ref|XP_006292416.1| hypothetical protein CARUB_v10018630mg [Caps...   195   3e-47
ref|XP_002878387.1| pentatricopeptide repeat-containing protein ...   194   3e-47

>ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
           gi|297745328|emb|CBI40408.3| unnamed protein product
           [Vitis vinifera]
          Length = 765

 Score =  298 bits (764), Expect = 2e-78
 Identities = 154/313 (49%), Positives = 216/313 (69%), Gaps = 4/313 (1%)
 Frame = -1

Query: 929 LTNELLERLQSNEEDWNQEELDHLV----SSISPSNRIVQVIRRLGNSAKAIKFLELIQK 762
           + N ++E LQ+ + DWN+++L  L+    S   P + ++Q+ R LG++AKA+KF   +Q 
Sbjct: 53  VVNLVVELLQTTDNDWNEDKLHQLLFPTTSPPPPPHNLLQITRLLGSTAKALKFFNWVQA 112

Query: 761 XXXXXXXXXXSQAYHAIFDVASREPYSHLKLSELLCKSKAQGVPLSVDSACLLIRRFERV 582
                     S    A+F+ ASREP SH KL +L   SK+  +PLSV++A LLIR F R 
Sbjct: 113 NSPCQDSPLLSFTLEAVFEHASREPNSHNKLLDLFKTSKSHKIPLSVNAATLLIRCFGRA 172

Query: 581 GRIDESIKIFNDVETSIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTG 402
             +DES  ++N++  S + TH+ N L+DV F+  RV +AL LLDEM+QP + FPPN  TG
Sbjct: 173 QMVDESFLVYNELCPSRRLTHIRNILIDVLFRKGRVDDALHLLDEMLQPKAEFPPNSNTG 232

Query: 401 SIVFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWEL 222
            IVF+AL KR+  GR +   E+  LVSK  EH+VFP+S+ LT+L+++LCR+G T++AW++
Sbjct: 233 HIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDV 292

Query: 221 LHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCK 42
           LH LM++   +EAASCN LL  LGRA +FKRMN LLAEMK+  I+PN +TFGILI+HLCK
Sbjct: 293 LHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCK 352

Query: 41  MHRVDEALQVLDK 3
             RVDEAL+V +K
Sbjct: 353 FRRVDEALEVFEK 365



 Score = 82.4 bits (202), Expect = 2e-13
 Identities = 54/220 (24%), Positives = 109/220 (49%), Gaps = 2/220 (0%)
 Frame = -1

Query: 665  ELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVE-TSIKDTHLCNT-LLDVF 492
            EL  +    GVP +V +   L+    + GRI+ +++ FN+++   +K   +  T L+  F
Sbjct: 437  ELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAF 496

Query: 491  FKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLSGGEVTELVSKLG 312
               + +  A++L DEM++   S  P+ +   + +T +   +  G++      + ++SK+ 
Sbjct: 497  CNVNNIEKAMELFDEMLEAGCS--PDAI---VYYTLISGLSQAGKL---DRASFVLSKMK 548

Query: 311  EHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRALDFK 132
            E    PD +    L+   CR    ++A+E+L  +       +  + NTL++   +  DF 
Sbjct: 549  EAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFS 608

Query: 131  RMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQV 12
              + L+ +M   G+ P  +T+G LIH  C    +DEA+++
Sbjct: 609  TAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKI 648



 Score = 80.1 bits (196), Expect = 1e-12
 Identities = 50/196 (25%), Positives = 100/196 (51%), Gaps = 3/196 (1%)
 Frame = -1

Query: 587 RVGRIDESIKIFNDVETS---IKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPP 417
           +VGR +E + +   + +    + +T   N L+D + KA  +  A +L D+M +     PP
Sbjct: 392 KVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNK--DGVPP 449

Query: 416 NDLTGSIVFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTN 237
           N +T + +   + K    GR+       E  +++    +  +++  T L+   C   N  
Sbjct: 450 NVVTLNTLVDGMCKH---GRI---NGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIE 503

Query: 236 QAWELLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILI 57
           +A EL   ++   C  +A    TL++GL +A    R + +L++MK+ G  P+ ++F +LI
Sbjct: 504 KAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLI 563

Query: 56  HHLCKMHRVDEALQVL 9
           +  C+ +++DEA ++L
Sbjct: 564 NGFCRKNKLDEAYEML 579


>gb|AGZ20103.1| pentatricopeptide repeat-containing protein [Camellia sinensis]
          Length = 771

 Score =  278 bits (710), Expect = 3e-72
 Identities = 144/319 (45%), Positives = 215/319 (67%), Gaps = 6/319 (1%)
 Frame = -1

Query: 941  PNWVLTNELLERLQSNEEDWNQ--EELDHLVSSISPSNR---IVQVIRRLGNSAKAIKFL 777
            PN +LT ++L  LQ++E DWN   +EL  L+ S + S     + ++ R LG + KA+ F 
Sbjct: 51   PNSILTTQILNLLQTHEIDWNNNNDELRQLLFSSTDSPHSFSLYKITRSLGTATKALNFF 110

Query: 776  ELIQ-KXXXXXXXXXXSQAYHAIFDVASREPYSHLKLSELLCKSKAQGVPLSVDSACLLI 600
            E  + +          S ++ AIF++AS++P    KLSELL  SK   +PL+  SA LLI
Sbjct: 111  EFFRTQSPSPPDPSSLSSSFQAIFELASQQPNPPTKLSELLTISKDHNIPLNFSSATLLI 170

Query: 599  RRFERVGRIDESIKIFNDVETSIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPNSSFP 420
            R F R G +++S+ IF +++  +K+TH+ N ++D+  +A RV +A Q+ DEM++P+S  P
Sbjct: 171  RCFARAGLVEKSVLIFKELDPDLKNTHISNLIVDILLRAGRVDDAFQVFDEMLKPDSESP 230

Query: 419  PNDLTGSIVFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNT 240
            PN++T +I    LL R+  GR +S  E+  LVSK GE  VFP  +RLT+L+TKLCR G +
Sbjct: 231  PNEITVNIAMAGLLWRDRTGRSVSDEEIIGLVSKFGECGVFPSVVRLTQLITKLCRTGKS 290

Query: 239  NQAWELLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGIL 60
            ++AW+++H +M++   V+A SCN LLAGLGR  +F++MN LLAEMK+ GI+P+ ITFGIL
Sbjct: 291  DRAWDVIHNVMKLGGDVQAPSCNALLAGLGRQQNFQKMNKLLAEMKENGIQPDIITFGIL 350

Query: 59   IHHLCKMHRVDEALQVLDK 3
            ++HLCK  RVDEAL+V +K
Sbjct: 351  VNHLCKFRRVDEALEVFEK 369



 Score = 72.8 bits (177), Expect = 2e-10
 Identities = 53/220 (24%), Positives = 108/220 (49%), Gaps = 2/220 (0%)
 Frame = -1

Query: 665  ELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVE-TSIKDTHLCNT-LLDVF 492
            EL  +   +GVP +V +   L+    + GRI+ +++ FN+++   +K   +  T L++ F
Sbjct: 443  ELFDQMNKEGVPPNVITLNTLVDGMCKHGRINSAMEFFNEMQGKGLKGNAVTYTALINAF 502

Query: 491  FKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLSGGEVTELVSKLG 312
              A+ +  A+QL +EM +   S  P+ +   + +T +      G++     V  ++ K G
Sbjct: 503  CNANNIDKAMQLFNEMSKAECS--PDAI---VYYTLISGLTQAGKLDDASFVATVMKKAG 557

Query: 311  EHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRALDFK 132
                  D M    L+   C     ++A+E+L  + +     +  + N+L++   +  DF 
Sbjct: 558  ---FCLDIMSYNILIGGFCSKNKLDKAYEMLKEMEQAGVKPDGITYNSLISYFSKNGDFM 614

Query: 131  RMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQV 12
              + ++ EM   G+ P  +T G LIH  C + ++DEA+++
Sbjct: 615  TAHRVMREMISDGLVPTVVTCGALIHAYCLVGKLDEAMKI 654



 Score = 71.6 bits (174), Expect = 4e-10
 Identities = 70/304 (23%), Positives = 126/304 (41%), Gaps = 17/304 (5%)
 Frame = -1

Query: 881  NQEELDHLVSSISPSN------RIVQVIRRLGNSAKAIKFLELIQKXXXXXXXXXXSQAY 720
            + EE+  LVS            R+ Q+I +L  + K+ +  ++I                
Sbjct: 254  SDEEIIGLVSKFGECGVFPSVVRLTQLITKLCRTGKSDRAWDVIHNVMKLGGDVQAPSCN 313

Query: 719  HAIFDVASREPYSHLKLSELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIF---- 552
              +  +  ++ +   K+++LL + K  G+   + +  +L+    +  R+DE++++F    
Sbjct: 314  ALLAGLGRQQNFQ--KMNKLLAEMKENGIQPDIITFGILVNHLCKFRRVDEALEVFEKMS 371

Query: 551  ----NDVETSIK-DTHLCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFT 387
                +D   S+K DT L NTL+D   K  R    L LL++M       P          T
Sbjct: 372  GERESDDGFSVKPDTILYNTLIDGLCKVGRQEQGLGLLEKMKLEQGCAPT---------T 422

Query: 386  ALLKRNLPGRVLSG--GEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHA 213
            A     + G   SG  G   EL  ++ +  V P+ + L  LV  +C++G  N A E  + 
Sbjct: 423  ATYNCLIDGFCKSGEIGRAHELFDQMNKEGVPPNVITLNTLVDGMCKHGRINSAMEFFNE 482

Query: 212  LMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHR 33
            +        A +   L+     A +  +   L  EM      P+AI +  LI  L +  +
Sbjct: 483  MQGKGLKGNAVTYTALINAFCNANNIDKAMQLFNEMSKAECSPDAIVYYTLISGLTQAGK 542

Query: 32   VDEA 21
            +D+A
Sbjct: 543  LDDA 546



 Score = 66.6 bits (161), Expect = 1e-08
 Identities = 76/301 (25%), Positives = 127/301 (42%), Gaps = 10/301 (3%)
 Frame = -1

Query: 875  EELDHLVSSISPSNRIVQVIRRLGNSAKAIK-FLELIQKXXXXXXXXXXSQAYHA--IFD 705
            +ELD  + +   SN IV ++ R G    A + F E+++                A  ++ 
Sbjct: 187  KELDPDLKNTHISNLIVDILLRAGRVDDAFQVFDEMLKPDSESPPNEITVNIAMAGLLWR 246

Query: 704  VASREPYSHLKLSELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVETSIKD 525
              +    S  ++  L+ K    GV  SV     LI +  R G+ D +  + ++V     D
Sbjct: 247  DRTGRSVSDEEIIGLVSKFGECGVFPSVVRLTQLITKLCRTGKSDRAWDVIHNVMKLGGD 306

Query: 524  THL--CNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVL 351
                 CN LL    +        +LL EM +  +   P+ +T  I+   L K     RV 
Sbjct: 307  VQAPSCNALLAGLGRQQNFQKMNKLLAEMKE--NGIQPDIITFGILVNHLCKFR---RVD 361

Query: 350  SGGEVTELVSKLGEHD----VFPDSMRLTKLVTKLCRNGNTNQAWELLHAL-MRMNCPVE 186
               EV E +S   E D    V PD++    L+  LC+ G   Q   LL  + +   C   
Sbjct: 362  EALEVFEKMSGERESDDGFSVKPDTILYNTLIDGLCKVGRQEQGLGLLEKMKLEQGCAPT 421

Query: 185  AASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQVLD 6
             A+ N L+ G  ++ +  R + L  +M   G+ PN IT   L+  +CK  R++ A++  +
Sbjct: 422  TATYNCLIDGFCKSGEIGRAHELFDQMNKEGVPPNVITLNTLVDGMCKHGRINSAMEFFN 481

Query: 5    K 3
            +
Sbjct: 482  E 482


>ref|XP_007051704.1| Pentatricopeptide repeat superfamily protein, putative [Theobroma
           cacao] gi|508703965|gb|EOX95861.1| Pentatricopeptide
           repeat superfamily protein, putative [Theobroma cacao]
          Length = 764

 Score =  267 bits (682), Expect = 5e-69
 Identities = 140/304 (46%), Positives = 207/304 (68%), Gaps = 3/304 (0%)
 Frame = -1

Query: 905 LQSNEEDWNQEE-LDHLVSSISPSNR--IVQVIRRLGNSAKAIKFLELIQKXXXXXXXXX 735
           L++  E+W+  + L  L+ S  P +   ++Q+ RRL +S++A+ F + +Q+         
Sbjct: 60  LETPHEEWSSSQPLQSLLFSSPPLSPRFLLQITRRLPSSSEALNFFKHLQQNSPSQDAQF 119

Query: 734 XSQAYHAIFDVASREPYSHLKLSELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKI 555
            S  + A+ + A REP S  +LS+L   SK   +PL+V++A LLIR F R+  +DES+ I
Sbjct: 120 LSYPFQAVLEQAGREPDSATRLSQLYQDSKQWEIPLTVNAAVLLIRYFGRLEMVDESLLI 179

Query: 554 FNDVETSIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLK 375
           FN+++ ++K+TH+ N L+DV  +  RV  AL +LDEM+QP S  PPND+TG IVF  L+K
Sbjct: 180 FNELDPTLKNTHVRNVLIDVSLRDGRVDYALNVLDEMLQPLSEVPPNDVTGDIVFYGLVK 239

Query: 374 RNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNC 195
           R   GR LS  E+ +LV K GEH VFP ++ LT+L+T+LCR+G  NQAW +L  L+R+  
Sbjct: 240 RERKGRKLSEEEIIKLVLKFGEHSVFPRTIWLTQLITRLCRSGKINQAWNVLQELLRLRA 299

Query: 194 PVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQ 15
           P+EAA  N +L GLGR+ D +RMN+LL EMK++ I+PN +TFGILI+ LCK  RVDEA++
Sbjct: 300 PLEAAPFNAVLTGLGRSGDVERMNMLLVEMKESDIQPNGVTFGILINQLCKSRRVDEAME 359

Query: 14  VLDK 3
           VL++
Sbjct: 360 VLNR 363



 Score = 72.8 bits (177), Expect = 2e-10
 Identities = 54/222 (24%), Positives = 106/222 (47%), Gaps = 4/222 (1%)
 Frame = -1

Query: 665  ELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVE-TSIKDTHLC-NTLLDVF 492
            EL  + K +GV  +V +   L+    R GR   +++ FND++   +K   +   TL+  F
Sbjct: 436  ELYDRMKEEGVSPNVITLNTLVDGMCRHGRTSSALEFFNDMQGKGLKGNAVTYTTLISAF 495

Query: 491  FKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLSG--GEVTELVSK 318
               + +  A+ L D++++   S        +IV+ +L+     G   +G   + + ++SK
Sbjct: 496  CNVNNIDKAVDLFDQLLRSGCS------ADAIVYYSLIS----GLCQAGRMDDASNVLSK 545

Query: 317  LGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRALD 138
            L E    PD      L++  C+    ++A+E+L  +      V+  + NTL+A   +  +
Sbjct: 546  LKEAGFCPDVACYNVLISGFCKKNKIDKAYEILKEMEEAGMKVDNVTYNTLIAYFSKIGE 605

Query: 137  FKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQV 12
            F   + ++ +M   G+ P   T+G LIH  C    + EA+++
Sbjct: 606  FGVAHRVMKKMIGEGLVPTVATYGALIHAYCLNGNIKEAMKL 647



 Score = 68.2 bits (165), Expect = 5e-09
 Identities = 60/265 (22%), Positives = 116/265 (43%), Gaps = 43/265 (16%)
 Frame = -1

Query: 674  KLSELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDV-------ETSIK-DTH 519
            +++ LL + K   +  +  +  +LI +  +  R+DE++++ N +       + S++ D  
Sbjct: 321  RMNMLLVEMKESDIQPNGVTFGILINQLCKSRRVDEAMEVLNRMGEGTGSDDVSVEADII 380

Query: 518  LCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLSGGE 339
              NTL+D   K  R    L+L++ M +      PN +T + +     K    G +  G  
Sbjct: 381  TYNTLIDGLCKVGRQEEGLRLMERM-RCTKGLAPNTVTYNCLIDGFCK---VGEIERG-- 434

Query: 338  VTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWE---------------------- 225
              EL  ++ E  V P+ + L  LV  +CR+G T+ A E                      
Sbjct: 435  -KELYDRMKEEGVSPNVITLNTLVDGMCRHGRTSSALEFFNDMQGKGLKGNAVTYTTLIS 493

Query: 224  -------------LLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKP 84
                         L   L+R  C  +A    +L++GL +A      + +L+++K+ G  P
Sbjct: 494  AFCNVNNIDKAVDLFDQLLRSGCSADAIVYYSLISGLCQAGRMDDASNVLSKLKEAGFCP 553

Query: 83   NAITFGILIHHLCKMHRVDEALQVL 9
            +   + +LI   CK +++D+A ++L
Sbjct: 554  DVACYNVLISGFCKKNKIDKAYEIL 578


>ref|XP_006491189.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g28460-like [Citrus sinensis]
          Length = 757

 Score =  246 bits (629), Expect = 8e-63
 Identities = 129/315 (40%), Positives = 199/315 (63%), Gaps = 5/315 (1%)
 Frame = -1

Query: 932 VLTNELLERLQSNEEDWNQE-ELDHLV---SSISPSNRIVQVIRRLGNSAKAIKFLELIQ 765
           ++T  L   LQ+ + +W    ++ +L+   +S+SP     Q+ RR  +S++A+ F   +Q
Sbjct: 41  IITQALDVLLQTPDNEWTSSPQIKNLLFSSTSLSPQ-LFFQITRRFPSSSRALSFFNFLQ 99

Query: 764 KXXXXXXXXXXSQ-AYHAIFDVASREPYSHLKLSELLCKSKAQGVPLSVDSACLLIRRFE 588
                         AY A+F++A RE  S   L +L    K Q +PLS++SA LLIR F 
Sbjct: 100 SNLPTEANTSSLSYAYQAVFELAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFG 159

Query: 587 RVGRIDESIKIFNDVETSIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDL 408
           +V   D S+ ++N+++ ++++TH+ N L+DV  + D   +A  +LDEM+   S FP N+L
Sbjct: 160 KVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNEL 219

Query: 407 TGSIVFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAW 228
           TG IVF AL++R      ++  E+  LVSK  EH VFP+++ LT+L+T+ CR G T++AW
Sbjct: 220 TGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAW 279

Query: 227 ELLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHL 48
           ++LH LM+ + P+EAASCN LL  LGR  DFKRMN L  EMK+  I+P+ +TFG +I+ L
Sbjct: 280 DVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRL 339

Query: 47  CKMHRVDEALQVLDK 3
           CK++R DEAL+V +K
Sbjct: 340 CKLYRADEALEVFEK 354



 Score = 72.0 bits (175), Expect = 3e-10
 Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 4/222 (1%)
 Frame = -1

Query: 665  ELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVETS--IKDTHLCNTLLDVF 492
            EL    K +GV  +V +   L+    R GRI+ +++ F +V       +      L+  F
Sbjct: 429  ELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAF 488

Query: 491  FKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLSG--GEVTELVSK 318
               +    A++  D+M +   S        S+V+  L+     G   +G   + + +VSK
Sbjct: 489  CNVNNFQEAIKWFDDMSRAGCS------ADSVVYFTLIS----GLCQAGRMNDASLVVSK 538

Query: 317  LGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRALD 138
            L E    PD +    L++  C+    ++A+E+L  +  +     + + NTL++ L ++ +
Sbjct: 539  LKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGN 598

Query: 137  FKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQV 12
            F     +L +M   G+ P  +T+G LIH  C    VDEA+++
Sbjct: 599  FSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKI 640



 Score = 58.5 bits (140), Expect = 4e-06
 Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 5/202 (2%)
 Frame = -1

Query: 605 LIRRFERVGRIDESIKIFNDVET--SIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPN 432
           LI RF R G+ DE+  + + +    +  +   CN LL+   +        QL  EM +  
Sbjct: 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKE-- 322

Query: 431 SSFPPNDLTGSIVFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCR 252
           +   P+ +T   +   L K       L   E      +  E  V PD +    L+  LC+
Sbjct: 323 NDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCK 382

Query: 251 NGNTNQAWELLHAL---MRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPN 81
            G   +A  L+  +   ++  C   A + N L+ G  ++ + ++   L   MK  G+ PN
Sbjct: 383 VGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN 442

Query: 80  AITFGILIHHLCKMHRVDEALQ 15
            +T   L+  +C+  R++ A++
Sbjct: 443 VVTLNTLVDGMCRHGRINSAVE 464



 Score = 58.5 bits (140), Expect = 4e-06
 Identities = 52/213 (24%), Positives = 96/213 (45%), Gaps = 2/213 (0%)
 Frame = -1

Query: 635  VPLSVDSACLLIRRFERVGRIDESIKIFNDV--ETSIKDTHLCNTLLDVFFKADRVHNAL 462
            +P +V   CL I  F + G I++ +++F+ +  E    +    NTL+D   +  R+++A+
Sbjct: 405  MPNAVTYNCL-INGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAV 463

Query: 461  QLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMR 282
            +   E+ +       N +T +I+ TA    N      +  E  +    +       DS+ 
Sbjct: 464  EFFQEVTR--KGLCANAVTYTILITAFCNVN------NFQEAIKWFDDMSRAGCSADSVV 515

Query: 281  LTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMK 102
               L++ LC+ G  N A  ++  L       +    N L++G  +     +   +L EM+
Sbjct: 516  YFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEME 575

Query: 101  DTGIKPNAITFGILIHHLCKMHRVDEALQVLDK 3
            D G+ PN++T+  LI  L K      A +VL K
Sbjct: 576  DIGMTPNSVTYNTLISFLSKSGNFSAARRVLKK 608


>ref|XP_002320827.2| pentatricopeptide repeat-containing family protein, partial
           [Populus trichocarpa] gi|550323783|gb|EEE99142.2|
           pentatricopeptide repeat-containing family protein,
           partial [Populus trichocarpa]
          Length = 720

 Score =  233 bits (593), Expect = 1e-58
 Identities = 127/318 (39%), Positives = 197/318 (61%), Gaps = 9/318 (2%)
 Frame = -1

Query: 929 LTNELLERLQSNEEDWNQEELDHLVSSISPSNR-----IVQVIRRLGNSAKAIKFLELIQ 765
           +  E L+ LQ    +WN  +L+ L+ + SP +        Q+ RRL +S++A+KFL  +Q
Sbjct: 5   IITEALQLLQIPGNEWNTTQLNQLLFTDSPPSSSSPRLFYQITRRLPSSSQALKFLNYLQ 64

Query: 764 KXXXXXXXXXXSQAY--HAIFDVASREPYSHLKLSELLCKSKAQGVPLSVDSACLLIRRF 591
                        +Y   AIF++A  EP S+  LS L   SK   +PL+V++A  L+R  
Sbjct: 65  NNSPSSPDTQSLLSYTFQAIFELAFCEPDSNANLSRLYKTSKELNIPLTVNAASFLLRAS 124

Query: 590 ERVGRIDESIKIFNDVETSIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPN--SSFPP 417
            R   ++ES+ +FND++ S+K+T+L N  L +  ++ RV +AL+++DEM + N  S+  P
Sbjct: 125 GRSELVEESLILFNDLDPSVKNTYLRNVWLSILLRSGRVKDALKVIDEMFESNDDSNCRP 184

Query: 416 NDLTGSIVFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTN 237
           ND TG I+F+ LLKR     +LS  E+  LV K GEH V   S  + +L+T+LCRN  TN
Sbjct: 185 NDATGDILFSFLLKRERNEELLSEDEIVNLVLKFGEHGVLISSFWMGRLITRLCRNRKTN 244

Query: 236 QAWELLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILI 57
           + W+L   ++++   +E+A+CN+LL GL R  +F RMN L+ +M +  I+PN +TFGILI
Sbjct: 245 RGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILI 304

Query: 56  HHLCKMHRVDEALQVLDK 3
           +H+CK  RVD+AL+VL+K
Sbjct: 305 NHMCKFRRVDDALEVLEK 322



 Score = 70.9 bits (172), Expect = 7e-10
 Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 10/222 (4%)
 Frame = -1

Query: 638 GVPLSVDSACL----LIRRFERVGRIDESIKIFNDVETS---IKDTHLCNTLLDVFFKAD 480
           G+ +SV+   +    LI    +VGR  E + +   + +      DT   N L+D F KA 
Sbjct: 331 GISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAG 390

Query: 479 RVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLSGGEVTELVSKLGEHDV 300
            +    +L DEM +   +  PN +T + +   + +    GRV S         + G    
Sbjct: 391 EIEKGKELFDEMNKEGVA--PNVVTVNTLVGGMCRT---GRVSSAVNFFVEAQRRGMKG- 444

Query: 299 FPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNL 120
             D++  T L+   C   N  +A EL + +++  C  +A    TL++G  +A      + 
Sbjct: 445 --DAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASF 502

Query: 119 LLAEMKDTGIKPNAITFGILIHHLC---KMHRVDEALQVLDK 3
           +LAE+K  GI+P+ + +  LI   C   K HRV E L+ +++
Sbjct: 503 VLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEE 544



 Score = 63.5 bits (153), Expect = 1e-07
 Identities = 50/223 (22%), Positives = 101/223 (45%), Gaps = 2/223 (0%)
 Frame = -1

Query: 674  KLSELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVET-SIK-DTHLCNTLL 501
            K  EL  +   +GV  +V +   L+    R GR+  ++  F + +   +K D      L+
Sbjct: 394  KGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALI 453

Query: 500  DVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLSGGEVTELVS 321
            + F   +    A++L +EM++   S  P+ +   + +T +   +  GR+     V   + 
Sbjct: 454  NAFCNVNNFEKAMELFNEMLKSGCS--PDAI---VYYTLISGFSQAGRMADASFVLAELK 508

Query: 320  KLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRAL 141
            KLG   + PD++    L+   CR    ++ +E+L  +       +  + NTL+A   +  
Sbjct: 509  KLG---IRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNG 565

Query: 140  DFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQV 12
            D K    ++ +M   G+ P   T+G +I+  C     +EA+++
Sbjct: 566  DLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEI 608


>gb|EXB51620.1| hypothetical protein L484_012912 [Morus notabilis]
          Length = 769

 Score =  228 bits (580), Expect = 4e-57
 Identities = 123/321 (38%), Positives = 192/321 (59%), Gaps = 4/321 (1%)
 Frame = -1

Query: 962 VEAKAKKPNWVLTNELLERLQSNEEDWNQEELDHLVSSISPS---NRIVQVIRRLGNSAK 792
           VE+   K +    +  L+ LQ  E +WN E+L  L+ S S S    R++ + RRL +S+K
Sbjct: 36  VESYPPKDDETFISHALQLLQPPETEWNAEQLQTLLFSDSESPSPTRLLHIARRLDSSSK 95

Query: 791 AIKFLELIQKXXXXXXXXXXSQA-YHAIFDVASREPYSHLKLSELLCKSKAQGVPLSVDS 615
           A+ F + +++            + + A+ ++ASREP    +L EL   S+ + VPL++++
Sbjct: 96  ALNFFDHVRENSHLPKDSSLLASTFQAVLELASREPSWEKRLFELYTTSRERNVPLTINA 155

Query: 614 ACLLIRRFERVGRIDESIKIFNDVETSIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQP 435
           A LL   F R G  +E + +   ++   K+TH  N ++DV  +   V +AL +LDEM++P
Sbjct: 156 ATLLFVCFGRAGMREELMTVLKGLDDDCKNTHALNRVIDVLLRLGCVDDALHVLDEMLEP 215

Query: 434 NSSFPPNDLTGSIVFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLC 255
           +  FPPN++TG+ VF  LL R+   R     E+  LVS+ GEH VFPD + L +L+T  C
Sbjct: 216 DGKFPPNEVTGNAVFPLLLNRDRSFRRFEDEEIIGLVSRFGEHGVFPDGLLLRQLITNFC 275

Query: 254 RNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAI 75
           R+     AW++L  +++ N  V   +CN LLAGL R+ DFK+MN L+ +MK+  IKPN +
Sbjct: 276 RDKKDGCAWDVLCNVIKSNGSVATDACNALLAGLARSKDFKKMNELMEKMKEKDIKPNVV 335

Query: 74  TFGILIHHLCKMHRVDEALQV 12
           T+GILI+ LCK  R+D AL+V
Sbjct: 336 TYGILINCLCKSRRIDGALEV 356



 Score = 79.3 bits (194), Expect = 2e-12
 Identities = 83/331 (25%), Positives = 145/331 (43%), Gaps = 15/331 (4%)
 Frame = -1

Query: 950  AKKPNWVLTNELLERLQSNEEDWNQEELDHLVSSISPSNRI------VQVIRRLGNSAKA 789
            A+  ++   NEL+E+++  +   N      L++ +  S RI        V+R+ G + K 
Sbjct: 310  ARSKDFKKMNELMEKMKEKDIKPNVVTYGILINCLCKSRRIDGALEVFAVLRQGGENGKY 369

Query: 788  IKFLELIQKXXXXXXXXXXSQAYHAIFD----VASREPYSHLK---LSELLCKSKAQGVP 630
            +   ++I               Y+ + D    V  +E   +L     SE  CK      P
Sbjct: 370  LVKPDVI--------------IYNTLIDGLCKVGRQEEGLNLMEQMRSEEFCK------P 409

Query: 629  LSVDSACLLIRRFERVGRIDESIKIFNDVETSI--KDTHLCNTLLDVFFKADRVHNALQL 456
             +V   CL I  F +VG I+  +KIF+ ++      D    NTL+D   K  RV +A++L
Sbjct: 410  NTVTYNCL-IDGFNKVGEIERGLKIFDQMKRDQVPPDVVTLNTLVDGMCKLGRVGSAVKL 468

Query: 455  LDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLT 276
             D  V   +    N  T +++  A    N   + +      EL  ++       D++   
Sbjct: 469  FD--VMQRTGIQGNAFTYTMLIAAFCSVNNINKAM------ELFDQMVSSRHSADAILYY 520

Query: 275  KLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDT 96
             L++ L R G  + A  ++  L      ++  + N L++G  +     +   +L +M++T
Sbjct: 521  SLISGLSRAGRMDDASMVVSKLKEAGFCLDIVAYNVLISGFCKKNKLDKAYEMLKDMEET 580

Query: 95   GIKPNAITFGILIHHLCKMHRVDEALQVLDK 3
            GIKPN IT+  LI H CK+   + A +VL K
Sbjct: 581  GIKPNTITYNTLISHFCKIGSFETAHKVLQK 611



 Score = 70.9 bits (172), Expect = 7e-10
 Identities = 50/217 (23%), Positives = 109/217 (50%), Gaps = 3/217 (1%)
 Frame = -1

Query: 647  KAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVE-TSIKDTHLCNTLL-DVFFKADRV 474
            K   VP  V +   L+    ++GR+  ++K+F+ ++ T I+      T+L   F   + +
Sbjct: 438  KRDQVPPDVVTLNTLVDGMCKLGRVGSAVKLFDVMQRTGIQGNAFTYTMLIAAFCSVNNI 497

Query: 473  HNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKR-NLPGRVLSGGEVTELVSKLGEHDVF 297
            + A++L D+MV    S        +I++ +L+   +  GR+    + + +VSKL E    
Sbjct: 498  NKAMELFDQMVSSRHS------ADAILYYSLISGLSRAGRM---DDASMVVSKLKEAGFC 548

Query: 296  PDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLL 117
             D +    L++  C+    ++A+E+L  +          + NTL++   +   F+  + +
Sbjct: 549  LDIVAYNVLISGFCKKNKLDKAYEMLKDMEETGIKPNTITYNTLISHFCKIGSFETAHKV 608

Query: 116  LAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQVLD 6
            L +M ++G+ P  +T+G LI+  C   +++EA+++ +
Sbjct: 609  LQKMLNSGLAPTVVTYGSLINAYCMEDKIEEAMELFE 645



 Score = 60.1 bits (144), Expect = 1e-06
 Identities = 67/327 (20%), Positives = 136/327 (41%), Gaps = 13/327 (3%)
 Frame = -1

Query: 944  KPNWVLTNELLE------RLQSNEEDWNQEELDHLVSSISPSNRIVQVIRRLGNSAKAIK 783
            KPN V  N L++       ++   + ++Q + D +   +   N +V  + +LG    A+K
Sbjct: 408  KPNTVTYNCLIDGFNKVGEIERGLKIFDQMKRDQVPPDVVTLNTLVDGMCKLGRVGSAVK 467

Query: 782  FLELIQKXXXXXXXXXXSQAYHAIFDVASREPYSHLKLSELLCKSKAQGVPLSVDSACLL 603
              +++Q+          +    A   V +      ++L + +  S+     +   S   L
Sbjct: 468  LFDVMQRTGIQGNAFTYTMLIAAFCSVNNIN--KAMELFDQMVSSRHSADAILYYS---L 522

Query: 602  IRRFERVGRIDESIKIFNDVETSIKDTHLC------NTLLDVFFKADRVHNALQLLDEMV 441
            I    R GR+D++    + V + +K+   C      N L+  F K +++  A ++L +M 
Sbjct: 523  ISGLSRAGRMDDA----SMVVSKLKEAGFCLDIVAYNVLISGFCKKNKLDKAYEMLKDME 578

Query: 440  QPNSSFPPNDLTGSIVFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTK 261
            +  +   PN +T + + +   K      + S     +++ K+    + P  +    L+  
Sbjct: 579  E--TGIKPNTITYNTLISHFCK------IGSFETAHKVLQKMLNSGLAPTVVTYGSLINA 630

Query: 260  LCRNGNTNQAWELLHALMR-MNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKP 84
             C      +A EL   +      P      N L+  L +  D K    L+ +MK  G+KP
Sbjct: 631  YCMEDKIEEAMELFEWMSSGSKIPPNTVIYNILIDSLCKKNDVKLALSLMNDMKVRGVKP 690

Query: 83   NAITFGILIHHLCKMHRVDEALQVLDK 3
            N  T+  L   L + + ++EA + +D+
Sbjct: 691  NTTTYNALFKGLRENNLLEEAFKFMDQ 717


>ref|XP_004301483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 771

 Score =  228 bits (580), Expect = 4e-57
 Identities = 125/315 (39%), Positives = 194/315 (61%), Gaps = 6/315 (1%)
 Frame = -1

Query: 929 LTNELLERLQSNEEDWNQEELDHLV---SSISPSNR-IVQVIRRLGNSAKAIKFLELIQK 762
           L  ++L+ LQ NE+ WN  +L  L+   S+ SPS R ++ + RRL +  KA+KF + + +
Sbjct: 49  LVTQVLQLLQPNEQHWNFPQLQTLLFPNSTSSPSPRSLLHITRRLASPNKALKFFDFVSQ 108

Query: 761 XXXXXXXXXXS--QAYHAIFDVASREPYSHLKLSELLCKSKAQGVPLSVDSACLLIRRFE 588
                         ++ A+ ++  R+P S   L EL   +K + VP+S  +A LL++   
Sbjct: 109 NLTPQDPPKALLSSSFQALVELTLRQPPSETNLYELYKMAKDRNVPISPKAAGLLVQSMG 168

Query: 587 RVGRIDESIKIFNDVETSIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDL 408
           R G  +E++ +FN++E+ +K TH+ N ++ +  K  RV  AL++LDEM+ P ++F  ++ 
Sbjct: 169 RAGMEEEALIVFNELESGLKTTHIRNVVIGMSLKMGRVDGALKVLDEMLDPEANFQVDEY 228

Query: 407 TGSIVFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAW 228
           T  +V    L+  + GR +S  E+ ELVSK G   VFP+SM LTKLV+ LCRN   + AW
Sbjct: 229 TVDVVVGLFLRGEIRGRSVSEEEIAELVSKFGGRGVFPNSMVLTKLVSGLCRNRKVSLAW 288

Query: 227 ELLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHL 48
           ++LH +M+    VEAA  N LL+ LGR  +FKRM  L+A+M++ GIKPN ITFGILI+ L
Sbjct: 289 DVLHDVMKKGGAVEAAPYNALLSALGRGNEFKRMRELMAKMEEMGIKPNVITFGILINRL 348

Query: 47  CKMHRVDEALQVLDK 3
           CK  R+  A++V +K
Sbjct: 349 CKSRRIGAAMEVFEK 363



 Score = 75.9 bits (185), Expect = 2e-11
 Identities = 55/220 (25%), Positives = 108/220 (49%), Gaps = 2/220 (0%)
 Frame = -1

Query: 665  ELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVETS-IKDTHLCNTLLDVFF 489
            EL  K K +G+P++V +   ++    R GR++ +++ FN++E   +K   +  T+L   F
Sbjct: 434  ELFDKMKEEGIPMNVSTLNTMLDGLSRRGRLNTALEFFNEMERKGLKGNAVTYTILITSF 493

Query: 488  -KADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLSGGEVTELVSKLG 312
                 +  A++L D+M+   SS  P D    +    +   +  GR+    + + +VSK+ 
Sbjct: 494  CNVTNIRKAMELFDQML---SSGCPTD--AKVYHCLISGLSQAGRM---EDASFVVSKMK 545

Query: 311  EHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRALDFK 132
            E     D +    ++         ++  E++  +       ++ + NTLLA LG++ DF+
Sbjct: 546  EAGFSMDIVSYNGMIRGFSSKNKPDKIHEMIEEMEVSRVKPDSVTYNTLLAYLGKSGDFE 605

Query: 131  RMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQV 12
              + +L  M   GI P  +TFG LIH  C    +++A+++
Sbjct: 606  SAHKVLDRMLSEGIVPTVVTFGTLIHAHCLDGDIEKAMRI 645



 Score = 67.0 bits (162), Expect = 1e-08
 Identities = 52/259 (20%), Positives = 118/259 (45%), Gaps = 35/259 (13%)
 Frame = -1

Query: 674  KLSELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVETSIK------DTHLC 513
            ++ EL+ K +  G+  +V +  +LI R  +  RI  ++++F  +   +K      D  + 
Sbjct: 321  RMRELMAKMEEMGIKPNVITFGILINRLCKSRRIGAAMEVFEKMSGGVKGVSAEPDVVIY 380

Query: 512  NTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSIV----------------FTAL 381
            NTL+D   K  R    L+L+++M +  S   PN +T +I+                F  +
Sbjct: 381  NTLIDGLCKVGRQEEGLRLMEKM-RSQSGCAPNTVTYNILIDGFNKVGDIEKGHELFDKM 439

Query: 380  LKRNLPGRVLSGGEVTELVSKLGEHDVFPD-------------SMRLTKLVTKLCRNGNT 240
             +  +P  V +   + + +S+ G  +   +             ++  T L+T  C   N 
Sbjct: 440  KEEGIPMNVSTLNTMLDGLSRRGRLNTALEFFNEMERKGLKGNAVTYTILITSFCNVTNI 499

Query: 239  NQAWELLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGIL 60
             +A EL   ++   CP +A   + L++GL +A   +  + ++++MK+ G   + +++  +
Sbjct: 500  RKAMELFDQMLSSGCPTDAKVYHCLISGLSQAGRMEDASFVVSKMKEAGFSMDIVSYNGM 559

Query: 59   IHHLCKMHRVDEALQVLDK 3
            I      ++ D+  +++++
Sbjct: 560  IRGFSSKNKPDKIHEMIEE 578


>ref|XP_002511922.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223549102|gb|EEF50591.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 346

 Score =  222 bits (566), Expect = 2e-55
 Identities = 121/282 (42%), Positives = 191/282 (67%), Gaps = 4/282 (1%)
 Frame = -1

Query: 914 LERLQSNEEDWNQEELDHLV-SSISPSNRIV-QVIRRLGNSAKAIKFLELIQKXXXXXXX 741
           ++ LQ  + +WN  +L++L+ S++SPS R++ Q+ RRL +S++A+KFL+ +Q        
Sbjct: 65  VQLLQIPDHEWNTTQLNNLIFSALSPSPRLLFQIARRLPSSSQALKFLKYLQNNFPTSNT 124

Query: 740 XXXSQAYHAIFDVASREPYSHLKLSELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESI 561
              S  + AIF++ASRE  S   L EL   SK   +PL+++SA LL+R F R+G +++S 
Sbjct: 125 QHLSSTFQAIFELASRENDSRTNLYELYKVSKEWNIPLTINSATLLLRFFGRIGLVEKSF 184

Query: 560 KIFNDVETSIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPNSSFP--PNDLTGSIVFT 387
            +FN++E  IK+TH+ N ++D+  +  RV +A ++LDEM+QP S F   P+D+TG I+FT
Sbjct: 185 ILFNELEHCIKNTHVRNLMVDLLLRDGRVDDAFKVLDEMLQPGSEFDLRPDDVTGDIIFT 244

Query: 386 ALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALM 207
            L+KR    +++S  E+ E+V KLG+ DVFP+S+RLT+ + +LCR GNT++A++LL  LM
Sbjct: 245 WLMKRE---KLVSPEEIVEVVLKLGKFDVFPNSIRLTQTIGQLCRTGNTSKAYDLLIELM 301

Query: 206 RMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPN 81
            +   ++AA CN LL GLGR  DF +MN  +A+MK   I P+
Sbjct: 302 TLGAAIKAAPCNALLTGLGRDGDFDKMNEFMAKMKVMDIVPD 343


>ref|XP_006339632.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Solanum tuberosum]
          Length = 761

 Score =  222 bits (565), Expect = 2e-55
 Identities = 122/313 (38%), Positives = 201/313 (64%), Gaps = 7/313 (2%)
 Frame = -1

Query: 920 ELLERLQSNEE-DW--NQEELDHLVSSISPSNRIVQVIRRLGNSAKAIKFLELIQKXXXX 750
           E++  L++N+  DW  N + ++ L +  SP++ ++++ R+LG++ KA+ F E  +     
Sbjct: 50  EIVSLLKTNDHNDWISNSQLVEFLHTPPSPTS-LLKITRQLGSTEKALHFFEFFKTHSSS 108

Query: 749 XXXXXXSQAY--HAIFDVASREPYSHL--KLSELLCKSKAQGVPLSVDSACLLIRRFERV 582
                 S ++   AI + A  E  S +  KL +L   +K + +PLS+++A LL+R F R 
Sbjct: 109 SSSNPSSLSFTFQAILEQAMHEEKSDVPGKLFQLFSFAKDRKIPLSINAATLLMRCFGRA 168

Query: 581 GRIDESIKIFNDVETSIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTG 402
             ++ESI ++N++++  ++T++ N LLD  F+   + +  ++LDEM++  S FPPN+ T 
Sbjct: 169 KMLEESISVYNELDSDSRNTNVVNLLLDCLFRGVNIDDGFKVLDEMLKRESDFPPNNSTV 228

Query: 401 SIVFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWEL 222
            IV  A+ KRN  GR +S  E+  L+ +  EH VF D +  TKL+TK CR+G  ++AW+L
Sbjct: 229 DIVLDAMWKRNWVGRRMSVEEICGLLVRFFEHGVFLDDVWFTKLITKFCRSGKCDKAWDL 288

Query: 221 LHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCK 42
           LH +M++   V+A+S N LL+GLGR  DF++MNLL+  MK+  + P+ +TFGI I+HLCK
Sbjct: 289 LHDMMKLGGQVKASSFNALLSGLGREHDFQKMNLLMNVMKEKEVNPDVVTFGIFINHLCK 348

Query: 41  MHRVDEALQVLDK 3
            +RVDEALQV +K
Sbjct: 349 CYRVDEALQVFEK 361



 Score = 67.0 bits (162), Expect = 1e-08
 Identities = 58/228 (25%), Positives = 108/228 (47%), Gaps = 5/228 (2%)
 Frame = -1

Query: 677  LKLSELLCKSKAQGVPLSVDSACL--LIRRFERVGRIDESIKIFNDVET---SIKDTHLC 513
            L++ E +  S+  GV +  D      LI    +VG+ +E +K+   +     S+ +T   
Sbjct: 356  LQVFEKMGGSETDGVLVKPDVVLYNTLIDGLCKVGKQEEGLKLMEKMRLKNGSVPNTITY 415

Query: 512  NTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLSGGEVT 333
            N L+D F KA  +  +L+L D+M        PN +T + +   + K    GRV S     
Sbjct: 416  NCLIDGFCKAGEIERSLELFDQMKMDR--VVPNVITMNTLLHGMCKF---GRVSSA---M 467

Query: 332  ELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGL 153
               +++ E  +  + +  T L+T  C   N ++A  L + +    C  +A    +L+ GL
Sbjct: 468  SFFAEMQEKGLKGNVITYTVLITTFCSVNNIDRAMSLFNEMSENRCLPDAKVYYSLIMGL 527

Query: 152  GRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQVL 9
             +A      + + ++ K+ GI  + I +  LI  LC+ +++DEA ++L
Sbjct: 528  CQARRTDDASCIASKAKEAGIGLDIICYNALIGALCRKNKIDEAHKML 575



 Score = 66.6 bits (161), Expect = 1e-08
 Identities = 61/253 (24%), Positives = 107/253 (42%), Gaps = 31/253 (12%)
 Frame = -1

Query: 677  LKLSELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVETS--IKDTHLCNTL 504
            LKL E + + K   VP ++   CL I  F + G I+ S+++F+ ++    + +    NTL
Sbjct: 396  LKLMEKM-RLKNGSVPNTITYNCL-IDGFCKAGEIERSLELFDQMKMDRVVPNVITMNTL 453

Query: 503  LDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLS-GGEVTE- 330
            L    K  RV +A+    EM +       N +T +++ T     N   R +S   E++E 
Sbjct: 454  LHGMCKFGRVSSAMSFFAEMQE--KGLKGNVITYTVLITTFCSVNNIDRAMSLFNEMSEN 511

Query: 329  ---------------------------LVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQA 231
                                       + SK  E  +  D +    L+  LCR    ++A
Sbjct: 512  RCLPDAKVYYSLIMGLCQARRTDDASCIASKAKEAGIGLDIICYNALIGALCRKNKIDEA 571

Query: 230  WELLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHH 51
             ++L  +       +  + NTL++       F   + ++  M D G  PN +T+G LIH 
Sbjct: 572  HKMLKDMEEAGIKPDCYTYNTLISYFSEKGQFTTASRIMKRMIDDGFLPNVVTYGALIHA 631

Query: 50   LCKMHRVDEALQV 12
             C    +DEA+++
Sbjct: 632  FCLAGNLDEAMKI 644


>ref|XP_004308336.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 883

 Score =  221 bits (563), Expect = 3e-55
 Identities = 122/311 (39%), Positives = 182/311 (58%), Gaps = 2/311 (0%)
 Frame = -1

Query: 929 LTNELLERLQSNEEDWNQEELDHLV--SSISPSNRIVQVIRRLGNSAKAIKFLELIQKXX 756
           L  + L+ LQ NE+DWN ++L  L+  +S SPS   +                       
Sbjct: 53  LATQFLQLLQPNEKDWNFDQLQTLLFSNSTSPSPHSLS---------------------- 90

Query: 755 XXXXXXXXSQAYHAIFDVASREPYSHLKLSELLCKSKAQGVPLSVDSACLLIRRFERVGR 576
                     A  A+ ++  RE  S  KL EL   +K + V L+V++A LLIR  ER G 
Sbjct: 91  ---------SALQAVLELTLRERISEKKLFELYQMAKERNVELNVNTAALLIRSLERDGM 141

Query: 575 IDESIKIFNDVETSIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSI 396
            +E + +F ++++ +K TH+ N ++ +     RV +AL++LDEM+ P + F  +++T  I
Sbjct: 142 EEEGLVVFKELDSELKSTHIRNVVIKMLVNMGRVDDALKVLDEMLDPEAQFRVDEITADI 201

Query: 395 VFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLH 216
           V  +LL +   GR +   E+  LVSK G+H VFPDS  LTKLVT LCRNG  ++AW++L 
Sbjct: 202 VIGSLLGKEKKGRGVGEEEIVGLVSKFGKHGVFPDSRILTKLVTVLCRNGKVSRAWDVLC 261

Query: 215 ALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMH 36
            +M+M   +EAASCN +L  LGR+ DFKRM  ++ +M++ GIKPN ITFG+ ++HLCK  
Sbjct: 262 DVMKMGGGLEAASCNAVLTALGRSNDFKRMGEVMVKMEEIGIKPNLITFGLFVNHLCKSR 321

Query: 35  RVDEALQVLDK 3
           R+D AL V +K
Sbjct: 322 RIDAALGVFEK 332



 Score = 77.8 bits (190), Expect = 6e-12
 Identities = 60/221 (27%), Positives = 113/221 (51%), Gaps = 3/221 (1%)
 Frame = -1

Query: 665  ELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVETS-IKDTHLCNTLL-DVF 492
            EL  K K +G+PL+V +   L+    R GR++ +++ F +++   +K   +  TLL   F
Sbjct: 404  ELFEKMKEEGIPLNVVTLNTLLDGLCRHGRLNAALEFFKEMQRDGLKGNAVSYTLLISSF 463

Query: 491  FKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLK-RNLPGRVLSGGEVTELVSKL 315
               + +  A++L ++M+   S+  P D+    V+  L+   +L GR+    + + +VSKL
Sbjct: 464  CDVNNISKAMELFNQML---SAECPTDVR---VYHCLISCLSLAGRM---EDASFVVSKL 514

Query: 314  GEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRALDF 135
             E     D++    ++         ++  E++  +       ++ + NTLLA L +A DF
Sbjct: 515  KEAGFSMDTVSYNVMIKGFSGKNMPDKIHEMIEEMEASRVKPDSVTYNTLLAYLSKARDF 574

Query: 134  KRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQV 12
            K  + +L  M D GI P  +T+G LIH  C    +D+A+++
Sbjct: 575  KGAHKVLDRMMDEGIVPTVVTYGTLIHAHCLDGNIDKAMRI 615


>ref|XP_007160491.1| hypothetical protein PHAVU_002G326200g [Phaseolus vulgaris]
           gi|561033906|gb|ESW32485.1| hypothetical protein
           PHAVU_002G326200g [Phaseolus vulgaris]
          Length = 760

 Score =  220 bits (561), Expect = 6e-55
 Identities = 119/310 (38%), Positives = 191/310 (61%), Gaps = 4/310 (1%)
 Frame = -1

Query: 920 ELLERLQSNEEDWNQEELDHLVSSISPSNRIVQVIRRLGNSAKAIKFLELIQKXXXXXXX 741
           +++E LQ+    W+ ++L   +     S+ ++ +  RL +  KA+ F+  +         
Sbjct: 45  QVVELLQNPLNHWDYDKLRPFL--FEASHHLLHITIRLNSIPKALDFINFL--GDRTEHH 100

Query: 740 XXXSQAYHAIFDVASREPYSHLKLSELLCKSKAQG--VPLSVDSACLLIRRFERVGRIDE 567
              S+ +    ++A++ P S  +L  L    K+ G  + L+  S  LL++   +   +++
Sbjct: 101 QALSRVFEGALELATQHPNSQKELLMLHSYRKSIGGRIALTSRSGFLLLKCLGKAQMVED 160

Query: 566 SIKIFNDVETSIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFT 387
           S+ +F ++++S K + +CN LL   F++  +  AL +LDEM++ +S FPPN+ TG +VF 
Sbjct: 161 SLILFKELDSSSKSSEICNELLKGLFRSGGIDGALHVLDEMLERDSDFPPNNFTGEVVFR 220

Query: 386 ALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALM 207
            L ++   GR  +  E+  LV+KL EH VFPD+ +LT+++TKLCR+     AWE+LH +M
Sbjct: 221 VLGEQERRGRSFADEEIMGLVTKLCEHGVFPDTFKLTQMITKLCRHRKNGVAWEVLHVVM 280

Query: 206 RMN--CPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHR 33
           R+     VEAASCN LLAGLGR  D +RMN L+AEM++ GIKP+ +TFGIL++HLCK  R
Sbjct: 281 RLGGAVAVEAASCNALLAGLGRERDIQRMNKLMAEMEEMGIKPSVVTFGILVNHLCKARR 340

Query: 32  VDEALQVLDK 3
           +DEALQV DK
Sbjct: 341 IDEALQVFDK 350



 Score = 72.0 bits (175), Expect = 3e-10
 Identities = 57/233 (24%), Positives = 106/233 (45%), Gaps = 9/233 (3%)
 Frame = -1

Query: 674 KLSELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVETSIK---------DT 522
           ++++L+ + +  G+  SV +  +L+    +  RIDE++++F+ +    +         D 
Sbjct: 308 RMNKLMAEMEEMGIKPSVVTFGILVNHLCKARRIDEALQVFDKLRGKGEGNNRVGVEPDV 367

Query: 521 HLCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLSGG 342
            L NTL+D   K  R  + L LL+EM     S  PN +T + +     K    G +   G
Sbjct: 368 VLFNTLIDGLCKVGREEHGLSLLEEMKTKKQS-RPNTITYNCLIDGFCKA---GNI---G 420

Query: 341 EVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLL 162
           +  EL S++ E  V P  + L  +V  LC++G  + A E  + +        A +   L+
Sbjct: 421 KARELYSQMIEEGVQPSVVTLNTMVNGLCKHGKVHNAVEFFNEMKGKGLKGNAVTYTALI 480

Query: 161 AGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQVLDK 3
           +      +  +      +M  +G  P+AI +  LI  L    R+D+A  V+ +
Sbjct: 481 SAFCGVNNIDKAMQYFDDMLSSGCSPDAIVYYSLISGLSTAGRMDDASVVVSR 533



 Score = 71.6 bits (174), Expect = 4e-10
 Identities = 51/227 (22%), Positives = 112/227 (49%), Gaps = 3/227 (1%)
 Frame = -1

Query: 674  KLSELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVE-TSIKDTHLCNT-LL 501
            K  EL  +   +GV  SV +   ++    + G++  +++ FN+++   +K   +  T L+
Sbjct: 421  KARELYSQMIEEGVQPSVVTLNTMVNGLCKHGKVHNAVEFFNEMKGKGLKGNAVTYTALI 480

Query: 500  DVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKR-NLPGRVLSGGEVTELV 324
              F   + +  A+Q  D+M+    S        +IV+ +L+   +  GR+    + + +V
Sbjct: 481  SAFCGVNNIDKAMQYFDDMLSSGCS------PDAIVYYSLISGLSTAGRM---DDASVVV 531

Query: 323  SKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRA 144
            S+L +     D      L++  C+     + +E+L+ +       +  + NTL++ LG+ 
Sbjct: 532  SRLKQAGFGLDLTCYNVLISGFCKKKKLERVYEMLNEMEVTGVKPDIVTYNTLVSYLGKI 591

Query: 143  LDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQVLDK 3
             DF+  + ++  M   G++P+ +T+G +IH  C    VDEA+++ ++
Sbjct: 592  GDFETASNVMKRMIKEGLEPSVVTYGAVIHAYCLKKNVDEAMKIFEQ 638


>ref|XP_004231193.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Solanum lycopersicum]
          Length = 761

 Score =  220 bits (560), Expect = 8e-55
 Identities = 118/305 (38%), Positives = 198/305 (64%), Gaps = 6/305 (1%)
 Frame = -1

Query: 899 SNEEDW--NQEELDHLVSSISPSNRIVQVIRRLGNSAKAIKFLELIQKXXXXXXXXXXSQ 726
           ++  DW  N E +++L +  SP++ ++++ R+LG++ KA++F E  +           S 
Sbjct: 58  TDHNDWISNSELVEYLHTPPSPTS-LLKITRQLGSTEKALQFFEFFKTHSSSSSSNPSSL 116

Query: 725 AY--HAIFDVASREPYSHL--KLSELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIK 558
           ++   AI + A RE  S +  KL +L   +K + +PLS+++  LL+R F R   ++ESI 
Sbjct: 117 SFTFQAILEQAMREEKSDVPRKLFQLFSFAKDRKIPLSINAGTLLMRCFGRAKMLEESIS 176

Query: 557 IFNDVETSIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALL 378
           +++++++  ++T++ N LLD  F+   + +  ++LDEM++ +S FPPN+ T  IV +A+ 
Sbjct: 177 VYHELDSDSRNTNVVNLLLDCLFRGRNIDDGFKVLDEMLKRDSDFPPNNSTVDIVLSAMW 236

Query: 377 KRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMN 198
           K N  GR +S  E+  L+ +  EH VF D +  TKL+TK CR+G  ++AW+LLH +M++ 
Sbjct: 237 KSNWVGRRMSVEEIYGLLVRFFEHGVFLDDVWFTKLITKFCRSGKCDKAWDLLHDMMKLG 296

Query: 197 CPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEAL 18
             V+A+S N LL GLGR  DF++MNLL+ EMK+  + P+ +TFGI I++LCK +RVDEAL
Sbjct: 297 GQVKASSFNALLCGLGREHDFQKMNLLMNEMKEKEVNPDVVTFGIFINYLCKCYRVDEAL 356

Query: 17  QVLDK 3
           QV +K
Sbjct: 357 QVFEK 361



 Score = 62.8 bits (151), Expect = 2e-07
 Identities = 49/213 (23%), Positives = 97/213 (45%), Gaps = 2/213 (0%)
 Frame = -1

Query: 635  VPLSVDSACLLIRRFERVGRIDESIKIFNDVETS--IKDTHLCNTLLDVFFKADRVHNAL 462
            VP ++   CL I  + + G I+ S+++F+ ++    + +    NTLL    K  RV +A+
Sbjct: 409  VPNTITYNCL-IDGYCKAGEIERSLELFDQMKKDRVVPNVITMNTLLHGMCKFGRVSSAM 467

Query: 461  QLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMR 282
            +   EM +       N +T +I+ T     N   R +S      L +++ E    PD+  
Sbjct: 468  RFFAEMQE--RGLKGNAITYTILITTFCSVNNIDRAMS------LFNEMSEDGCLPDARA 519

Query: 281  LTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMK 102
               L+  LC+   T++A  +          ++    N+L+  L R    +    +L +M+
Sbjct: 520  YYSLIMGLCQARRTDEASCIASKAKEARVDLDIICYNSLIGALCRKNKIEEAQKMLKDME 579

Query: 101  DTGIKPNAITFGILIHHLCKMHRVDEALQVLDK 3
            + GIKP+  T+  LI +  +  +   A +++ +
Sbjct: 580  EAGIKPDCYTYNTLISYFSEKGQFTAASRIMKR 612


>ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  219 bits (557), Expect = 2e-54
 Identities = 127/310 (40%), Positives = 184/310 (59%), Gaps = 4/310 (1%)
 Frame = -1

Query: 920 ELLERLQSNEEDWNQEELDHLVSSISP--SNRIVQVIRRLGNSAKAIKFLELIQKXXXXX 747
           +++E LQ   + W+ ++L  ++ + SP  S+  +Q+  +L +  K+++FL+ +       
Sbjct: 38  QVVELLQLPPDHWDHDKLHSILFNPSPLSSHHFLQITLQLSSIPKSLQFLKYLSAKAPQH 97

Query: 746 XXXXXSQAYHAIFDVASREPYSHLKLSEL--LCKSKAQGVPLSVDSACLLIRRFERVGRI 573
                S  +    ++ASR P S   L  L    KS    +PL+  SA LL++  E    +
Sbjct: 98  HPHSLSSVFQGSLELASRHPNSQTHLLSLHRFRKSTHPTLPLTPKSASLLLQCLENARLV 157

Query: 572 DESIKIFNDVETSIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSIV 393
           ++S+ +FN ++ S K   LC+ LL V  K+ R  +AL +LDEM Q NS F    +TG IV
Sbjct: 158 NDSLLLFNQLDPSSKSPQLCHGLLRVLLKSGRAGDALHVLDEMPQANSGF---SVTGEIV 214

Query: 392 FTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHA 213
           F  L++    GR    GEV  LV+KLGE  VFPD  +LT+LV KLC +     AWE+LH 
Sbjct: 215 FGELVRS---GRSFPDGEVVGLVAKLGERGVFPDGFKLTQLVGKLCGDQKNGVAWEVLHC 271

Query: 212 LMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHR 33
           +MR+   V+AASCN LL  LGR  D KRMN LLAEM+   I+P+ +TFGIL++HLCK  R
Sbjct: 272 VMRLGGAVDAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARR 331

Query: 32  VDEALQVLDK 3
           +DEALQV D+
Sbjct: 332 IDEALQVFDR 341



 Score = 73.9 bits (180), Expect = 9e-11
 Identities = 58/232 (25%), Positives = 106/232 (45%), Gaps = 8/232 (3%)
 Frame = -1

Query: 674 KLSELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVETS--------IKDTH 519
           +++ELL + + + +  SV +  +L+    +  RIDE++++F+ +             D  
Sbjct: 299 RMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVV 358

Query: 518 LCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLSGGE 339
           L NTL+D   K  +  + L LL+EM   N +  PN +T + +     K        +   
Sbjct: 359 LFNTLIDGLCKVGKEEDGLSLLEEMKMGNIN-RPNTVTYNCLIDGFFKAG------NFDR 411

Query: 338 VTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLA 159
             EL  ++ E  V P+ + L  LV  LC++G  ++A E  + +        AA+   L++
Sbjct: 412 AHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALIS 471

Query: 158 GLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQVLDK 3
                 +  R      EM  +G  P+A+ +  LI  LC   R+++A  V+ K
Sbjct: 472 AFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSK 523



 Score = 71.6 bits (174), Expect = 4e-10
 Identities = 51/222 (22%), Positives = 106/222 (47%), Gaps = 4/222 (1%)
 Frame = -1

Query: 665  ELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVE-TSIKDTHLCNT-LLDVF 492
            EL  +   +GV  +V +   L+    + GR+  +++ FN+++   +K      T L+  F
Sbjct: 414  ELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAF 473

Query: 491  FKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLSG--GEVTELVSK 318
               + ++ A+Q  +EM+    S        ++V+ +L+     G  ++G   + + +VSK
Sbjct: 474  CGVNNINRAMQCFEEMLSSGCS------PDAVVYYSLIS----GLCIAGRMNDASVVVSK 523

Query: 317  LGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRALD 138
            L       D      L++  C+     + +ELL  +       +  + NTL++ LG+  D
Sbjct: 524  LKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGD 583

Query: 137  FKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQV 12
            F   + ++ +M   G++P+ +T+G +IH  C    VDE +++
Sbjct: 584  FATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKI 625



 Score = 68.6 bits (166), Expect = 4e-09
 Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 2/212 (0%)
 Frame = -1

Query: 632 PLSVDSACLLIRRFERVGRIDESIKIFNDV-ETSIKDTHLC-NTLLDVFFKADRVHNALQ 459
           P +V   CL I  F + G  D + ++F  + E  ++   +  NTL+D   K  RVH A++
Sbjct: 391 PNTVTYNCL-IDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVE 449

Query: 458 LLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRL 279
             +EM         N  T + + +A    N   R +   E  E++S        PD++  
Sbjct: 450 FFNEM--KGKGLKGNAATYTALISAFCGVNNINRAMQCFE--EMLSS----GCSPDAVVY 501

Query: 278 TKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKD 99
             L++ LC  G  N A  ++  L      ++ +  N L++G  +    +R+  LL EM++
Sbjct: 502 YSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEE 561

Query: 98  TGIKPNAITFGILIHHLCKMHRVDEALQVLDK 3
           TG+KP+ IT+  LI +L K      A +V++K
Sbjct: 562 TGVKPDTITYNTLISYLGKTGDFATASKVMEK 593


>ref|XP_004300812.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 763

 Score =  212 bits (540), Expect = 2e-52
 Identities = 117/312 (37%), Positives = 189/312 (60%), Gaps = 6/312 (1%)
 Frame = -1

Query: 920 ELLERLQSNEEDWNQEELDHLV---SSISPSNR-IVQVIRRLGNSAKAIKFLELIQKXXX 753
           ++L+ LQ NE+ WN  +L  L+   S+ SPS R ++ + R L +  KA+KF + + +   
Sbjct: 49  QVLQVLQPNEQHWNFPQLHTLLFPSSTSSPSPRTLLHITRCLASPTKALKFFDFVSQNLT 108

Query: 752 XXXXXXXS--QAYHAIFDVASREPYSHLKLSELLCKSKAQGVPLSVDSACLLIRRFERVG 579
                      ++ A+ ++  R+P S   L EL   +K + VP+S  +  LL++   R G
Sbjct: 109 PQDPPKAVLSSSFEALVELTLRQPPSETNLYELYKMAKDRNVPISPKAVRLLVQSMRRAG 168

Query: 578 RIDESIKIFNDVETSIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGS 399
             +E++ +FN++++++K T + N  + +  K  RV +AL++LDEM+ P + F  +D T  
Sbjct: 169 MEEEALLVFNELDSALKTTFIRNEAIGLLLKMGRVDDALKVLDEMLDPEAKFQVDDFTVG 228

Query: 398 IVFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELL 219
           +     L   + GR +S  E+ E VSK GE  VFP+S+ LTKLV+ LCRN     AW++L
Sbjct: 229 L----FLSGEIRGRSVSEEEIVEFVSKFGERVVFPNSVVLTKLVSGLCRNRKVGLAWDVL 284

Query: 218 HALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKM 39
           H +M+    +EAA CN LL+ LGR  +F+RM  L+A+M++ GIKP+ ITFGILI+ LC+ 
Sbjct: 285 HDVMKKGGALEAAPCNALLSALGRGNEFERMRELMAKMEEMGIKPDVITFGILINRLCQS 344

Query: 38  HRVDEALQVLDK 3
            R+D A++V +K
Sbjct: 345 RRIDAAMEVFEK 356



 Score = 79.3 bits (194), Expect = 2e-12
 Identities = 55/222 (24%), Positives = 106/222 (47%), Gaps = 4/222 (1%)
 Frame = -1

Query: 665  ELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVETS-IKDTHLCNTLLDVFF 489
            EL  K K +G+P++V +   ++    R GR++ +++ FN++E   +K   +  T+L   F
Sbjct: 427  ELFDKMKEEGIPMNVSTLNTMLDGLSRRGRLNTALEFFNEMERKGLKGDFVTYTILITSF 486

Query: 488  -KADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLSGG--EVTELVSK 318
                 +H A++L D+M           LTG      + +R + G   +G   + + +VSK
Sbjct: 487  CNVTNIHKAMELFDQM-----------LTGCPTDAKVYRRLISGLSQAGRMEDASFVVSK 535

Query: 317  LGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRALD 138
            L E     D +    ++   C     ++  E++  +       ++ + NTLLA LG+  D
Sbjct: 536  LKEAGFSMDIVSYNVMIHGFCSENKPDKIHEMIEEMEASGVKPDSVTYNTLLAYLGKHGD 595

Query: 137  FKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQV 12
             +    +   M + G+ P  +TFG LIH  C    +++A+++
Sbjct: 596  IESAYKVFDRMLNEGVVPTVVTFGTLIHAHCLDGDIEKAMRI 637



 Score = 65.5 bits (158), Expect = 3e-08
 Identities = 44/198 (22%), Positives = 96/198 (48%), Gaps = 3/198 (1%)
 Frame = -1

Query: 587 RVGRIDESIKIFNDVETS---IKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPP 417
           +VGR +E +++   + +      DT   N L+D F K   +    +L D+M +     P 
Sbjct: 382 KVGRQEEGLRLMEKMRSQSGCAPDTVTYNILIDGFNKVGDIEKGRELFDKMKE--EGIPM 439

Query: 416 NDLTGSIVFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTN 237
           N  T + +   L +R   GR+       E  +++    +  D +  T L+T  C   N +
Sbjct: 440 NVSTLNTMLDGLSRR---GRL---NTALEFFNEMERKGLKGDFVTYTILITSFCNVTNIH 493

Query: 236 QAWELLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILI 57
           +A EL   ++   CP +A     L++GL +A   +  + +++++K+ G   + +++ ++I
Sbjct: 494 KAMELFDQML-TGCPTDAKVYRRLISGLSQAGRMEDASFVVSKLKEAGFSMDIVSYNVMI 552

Query: 56  HHLCKMHRVDEALQVLDK 3
           H  C  ++ D+  +++++
Sbjct: 553 HGFCSENKPDKIHEMIEE 570


>ref|XP_004503311.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like isoform X2 [Cicer arietinum]
          Length = 643

 Score =  211 bits (537), Expect = 4e-52
 Identities = 103/191 (53%), Positives = 138/191 (72%)
 Frame = -1

Query: 575 IDESIKIFNDVETSIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSI 396
           +D S+  FN+++ S K T +CN LL   FK+ R  +AL +LD+M++ NS FPP+D TG +
Sbjct: 40  LDVSLLRFNELDPSSKSTRVCNGLLMGLFKSGRTTDALHILDQMLELNSEFPPDDFTGEV 99

Query: 395 VFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLH 216
           VF  L+KR  PG+ L+  E+  LV+KLGEH VFPD+ +LT+L++KLC       AWELLH
Sbjct: 100 VFGELVKRERPGKGLADEEIMGLVTKLGEHGVFPDTFKLTQLISKLCGKRKNCVAWELLH 159

Query: 215 ALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMH 36
            +M++  PVEAASCN LL GLGR  D ++MN LLAEM++  I+P+ ITFGILI+HLCK  
Sbjct: 160 GVMKLGGPVEAASCNALLTGLGRERDIQKMNKLLAEMEELKIRPSVITFGILINHLCKAR 219

Query: 35  RVDEALQVLDK 3
           R+DEAL V DK
Sbjct: 220 RIDEALGVFDK 230



 Score = 77.0 bits (188), Expect = 1e-11
 Identities = 54/227 (23%), Positives = 112/227 (49%), Gaps = 3/227 (1%)
 Frame = -1

Query: 674 KLSELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVE-TSIKDTHLCNT-LL 501
           K  EL      +GV  +V +   L+    ++GR+  +++  N+++   +K   +  T L+
Sbjct: 300 KARELFGLMNEEGVQPNVVTLNTLVGGMCKIGRVYSAVEFLNEMKGKGLKGNAVTYTALI 359

Query: 500 DVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKR-NLPGRVLSGGEVTELV 324
             F   + +  A+Q  DEM+    S        +IV+ +L+   ++ GR+    + + +V
Sbjct: 360 SAFCGVNNIDQAMQYFDEMLSSGCS------PDAIVYYSLISGLSIAGRM---DDASVVV 410

Query: 323 SKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRA 144
           S+L       D      L++  C+     + +E+L+ +       +  + NTL++ LG+A
Sbjct: 411 SQLKRAGFGLDRTCYNVLISGFCKKKKLERVYEMLNQMEETGVKPDTVTYNTLVSYLGKA 470

Query: 143 LDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQVLDK 3
            DF   + ++ +M   G+KP+ +T+G +IH  C    VDEA+++ ++
Sbjct: 471 GDFAAASKVMEKMIKEGLKPSVVTYGAVIHAYCLKKNVDEAMKIFEE 517



 Score = 62.4 bits (150), Expect = 3e-07
 Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 8/232 (3%)
 Frame = -1

Query: 674 KLSELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVETSIK--------DTH 519
           K+++LL + +   +  SV +  +LI    +  RIDE++ +F+ +    +        D  
Sbjct: 188 KMNKLLAEMEELKIRPSVITFGILINHLCKARRIDEALGVFDKLRGKGEKNRNGVEPDVV 247

Query: 518 LCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLSGGE 339
           L NTL+D   K  R  + L LL+EM +      PN +T + +     K    G +    +
Sbjct: 248 LYNTLIDGLCKVGREEDGLSLLEEM-KTEKKNRPNTVTYNCLIDGFCK---AGNI---DK 300

Query: 338 VTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLA 159
             EL   + E  V P+ + L  LV  +C+ G    A E L+                   
Sbjct: 301 ARELFGLMNEEGVQPNVVTLNTLVGGMCKIGRVYSAVEFLN------------------- 341

Query: 158 GLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQVLDK 3
                           EMK  G+K NA+T+  LI   C ++ +D+A+Q  D+
Sbjct: 342 ----------------EMKGKGLKGNAVTYTALISAFCGVNNIDQAMQYFDE 377


>ref|XP_004503310.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like isoform X1 [Cicer arietinum]
          Length = 776

 Score =  211 bits (537), Expect = 4e-52
 Identities = 103/191 (53%), Positives = 138/191 (72%)
 Frame = -1

Query: 575 IDESIKIFNDVETSIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSI 396
           +D S+  FN+++ S K T +CN LL   FK+ R  +AL +LD+M++ NS FPP+D TG +
Sbjct: 173 LDVSLLRFNELDPSSKSTRVCNGLLMGLFKSGRTTDALHILDQMLELNSEFPPDDFTGEV 232

Query: 395 VFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLH 216
           VF  L+KR  PG+ L+  E+  LV+KLGEH VFPD+ +LT+L++KLC       AWELLH
Sbjct: 233 VFGELVKRERPGKGLADEEIMGLVTKLGEHGVFPDTFKLTQLISKLCGKRKNCVAWELLH 292

Query: 215 ALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMH 36
            +M++  PVEAASCN LL GLGR  D ++MN LLAEM++  I+P+ ITFGILI+HLCK  
Sbjct: 293 GVMKLGGPVEAASCNALLTGLGRERDIQKMNKLLAEMEELKIRPSVITFGILINHLCKAR 352

Query: 35  RVDEALQVLDK 3
           R+DEAL V DK
Sbjct: 353 RIDEALGVFDK 363



 Score = 77.0 bits (188), Expect = 1e-11
 Identities = 54/227 (23%), Positives = 112/227 (49%), Gaps = 3/227 (1%)
 Frame = -1

Query: 674  KLSELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVE-TSIKDTHLCNT-LL 501
            K  EL      +GV  +V +   L+    ++GR+  +++  N+++   +K   +  T L+
Sbjct: 433  KARELFGLMNEEGVQPNVVTLNTLVGGMCKIGRVYSAVEFLNEMKGKGLKGNAVTYTALI 492

Query: 500  DVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKR-NLPGRVLSGGEVTELV 324
              F   + +  A+Q  DEM+    S        +IV+ +L+   ++ GR+    + + +V
Sbjct: 493  SAFCGVNNIDQAMQYFDEMLSSGCS------PDAIVYYSLISGLSIAGRM---DDASVVV 543

Query: 323  SKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRA 144
            S+L       D      L++  C+     + +E+L+ +       +  + NTL++ LG+A
Sbjct: 544  SQLKRAGFGLDRTCYNVLISGFCKKKKLERVYEMLNQMEETGVKPDTVTYNTLVSYLGKA 603

Query: 143  LDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQVLDK 3
             DF   + ++ +M   G+KP+ +T+G +IH  C    VDEA+++ ++
Sbjct: 604  GDFAAASKVMEKMIKEGLKPSVVTYGAVIHAYCLKKNVDEAMKIFEE 650



 Score = 62.4 bits (150), Expect = 3e-07
 Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 8/232 (3%)
 Frame = -1

Query: 674 KLSELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVETSIK--------DTH 519
           K+++LL + +   +  SV +  +LI    +  RIDE++ +F+ +    +        D  
Sbjct: 321 KMNKLLAEMEELKIRPSVITFGILINHLCKARRIDEALGVFDKLRGKGEKNRNGVEPDVV 380

Query: 518 LCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLSGGE 339
           L NTL+D   K  R  + L LL+EM +      PN +T + +     K    G +    +
Sbjct: 381 LYNTLIDGLCKVGREEDGLSLLEEM-KTEKKNRPNTVTYNCLIDGFCK---AGNI---DK 433

Query: 338 VTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLA 159
             EL   + E  V P+ + L  LV  +C+ G    A E L+                   
Sbjct: 434 ARELFGLMNEEGVQPNVVTLNTLVGGMCKIGRVYSAVEFLN------------------- 474

Query: 158 GLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQVLDK 3
                           EMK  G+K NA+T+  LI   C ++ +D+A+Q  D+
Sbjct: 475 ----------------EMKGKGLKGNAVTYTALISAFCGVNNIDQAMQYFDE 510


>ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
           gi|449475521|ref|XP_004154479.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
          Length = 660

 Score =  206 bits (525), Expect = 9e-51
 Identities = 102/209 (48%), Positives = 149/209 (71%), Gaps = 1/209 (0%)
 Frame = -1

Query: 626 SVDSACLLIRRFERVGRIDESIKIFNDVETSIKDTHLCNTLLDVFFKADRVHNALQLLDE 447
           +  S+  L+RR  R+G +DE++  F+ +++  K+T++ N ++++  K+ RV NA+ +LDE
Sbjct: 5   TAQSSVHLLRRLGRIGMVDEALAAFSTLDSHAKNTNVRNEIINLLLKSGRVDNAMNVLDE 64

Query: 446 MVQPNSSFPPNDLTGSIVFTALLKRN-LPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKL 270
           M+ P S F PND T  IVF  LLK + L GRV    E+  LVSK G+H++FPD++ LT+L
Sbjct: 65  MLLPESEFRPNDKTAGIVFNNLLKIDGLEGRVKED-EIAGLVSKFGKHNIFPDTIALTQL 123

Query: 269 VTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGI 90
           ++KLCR+GNTN AW +L  LM +N   +AA CN LL GLG+A +F +MNLL+ +MKD  I
Sbjct: 124 ISKLCRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGLGKAREFGKMNLLMRKMKDMNI 183

Query: 89  KPNAITFGILIHHLCKMHRVDEALQVLDK 3
           +P  ITFGILI+HLCK  R+D+AL+V +K
Sbjct: 184 QPTVITFGILINHLCKFRRIDDALEVFEK 212



 Score = 63.9 bits (154), Expect = 9e-08
 Identities = 55/242 (22%), Positives = 108/242 (44%), Gaps = 32/242 (13%)
 Frame = -1

Query: 641 QGVPLSVDSACLLIRRFERVGRIDESIKIFNDVETSIKDTHLC--NTLLDVFFKADRVHN 468
           Q  P +    CL I  + R G I+ + K+FN++E +  + ++   NTL+D   K +R+  
Sbjct: 258 QCAPTTATFNCL-INGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLVDGMCKHNRIST 316

Query: 467 ALQLLDEMVQPNSSFPPNDLTGSIVFTALLKRN--------------------------- 369
           A++    M Q       N++T ++   A    N                           
Sbjct: 317 AVEFFRVMQQ--KGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTL 374

Query: 368 LPGRVLSG--GEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNC 195
           + G   +G   + + +VSKL E     D +    L+++ C+    ++A E L+ +     
Sbjct: 375 ICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGV 434

Query: 194 PVEAASCNTLLAGLGRALDFKRMNLLLAEM-KDTGIKPNAITFGILIHHLCKMHRVDEAL 18
             ++ + NTL++   +  +FK  +  + +M ++ G+ P   T+G LIH  C  + +DEA+
Sbjct: 435 KPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAI 494

Query: 17  QV 12
           ++
Sbjct: 495 KI 496



 Score = 59.3 bits (142), Expect = 2e-06
 Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 5/202 (2%)
 Frame = -1

Query: 605 LIRRFERVGRIDESIKIFNDVE--TSIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPN 432
           LI +  R G  + +  I +++     +KD   CN LL    KA        L+ +M   N
Sbjct: 123 LISKLCRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGLGKAREFGKMNLLMRKMKDMN 182

Query: 431 SSFPPNDLTGSIVFTALLKRNLPGRVLSGGEVTELVSKLGEHD---VFPDSMRLTKLVTK 261
               P  +T  I+   L K     R+    EV E +    E     V PD++    L+  
Sbjct: 183 --IQPTVITFGILINHLCKFR---RIDDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDG 237

Query: 260 LCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPN 81
           LC+ G   +A  L+  +    C    A+ N L+ G  R+ + +  + L  EM++  I+PN
Sbjct: 238 LCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPN 297

Query: 80  AITFGILIHHLCKMHRVDEALQ 15
            IT   L+  +CK +R+  A++
Sbjct: 298 VITLNTLVDGMCKHNRISTAVE 319


>ref|XP_006397795.1| hypothetical protein EUTSA_v10001319mg [Eutrema salsugineum]
           gi|557098868|gb|ESQ39248.1| hypothetical protein
           EUTSA_v10001319mg [Eutrema salsugineum]
          Length = 776

 Score =  206 bits (524), Expect = 1e-50
 Identities = 121/315 (38%), Positives = 191/315 (60%), Gaps = 6/315 (1%)
 Frame = -1

Query: 929 LTNELLERLQS-NEEDW-NQEELDHLVSSISPSNRIV-QVIRRLGNSAKAIKFLELIQKX 759
           +  E LE L+   + DW + E LD L+ S S S R+  Q+ RRL + + A+ FL+ + + 
Sbjct: 45  VAREFLEHLRDIPQHDWVSCELLDSLLLSSSSSPRVFSQITRRLDSYSLAVSFLDYLNEK 104

Query: 758 XXXXXXXXXSQA--YHAIFDVASREPYSHLKLSELLCKSKAQGVPLSVDSACLLIRRFER 585
                    S A  + ++ + A +EP S  KL +L   SK + VPL+ ++A LLIR F R
Sbjct: 105 SESLKHRDESLAVAFQSVIEYACKEPDSRDKLLKLYETSKEKKVPLTFNAAKLLIRWFGR 164

Query: 584 VGRIDESIKIFNDVETSIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLT 405
           +G +++S+ ++ +++  +K+TH+ N  +D+  +   V +AL++LDEM++  S FPPN+ T
Sbjct: 165 LGMLNQSVLVYEELDPDVKNTHVRNVFIDLLLQGGLVDDALKVLDEMLEKESIFPPNEST 224

Query: 404 GSIVFTALLKRNLPGRV-LSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAW 228
             IVF   + +  P R  ++  E  +LV K G+  + P+S+ LT+ +T LC+NG T  AW
Sbjct: 225 VDIVFHGCVSKGKPKRRRVTDEETIQLVLKFGDRGLSPNSVWLTRFITTLCKNGQTLVAW 284

Query: 227 ELLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHL 48
           E L  LM+   P+E    N LL  LGR +D  RMN++ AEM + GI+ +A+T GILI+ L
Sbjct: 285 ETLSKLMKNKIPLETGPFNALLTSLGRNMDIGRMNVVAAEMDEMGIRADAVTLGILINTL 344

Query: 47  CKMHRVDEALQVLDK 3
           CK  RVDEAL+V ++
Sbjct: 345 CKSLRVDEALEVFEQ 359



 Score = 69.7 bits (169), Expect = 2e-09
 Identities = 67/319 (21%), Positives = 135/319 (42%), Gaps = 10/319 (3%)
 Frame = -1

Query: 932  VLTNELLERLQSNEEDWNQEELDHLVSSISPSNRIVQV----IRRLGNSAKAIKFL---- 777
            +L N L + L+ +E     E  + +  S S    +++        L NS   ++ L    
Sbjct: 339  ILINTLCKSLRVDEA---LEVFEQMRGSQSDDGNVIKADEIHFNTLINSLCKVRRLKEAE 395

Query: 776  ELIQKXXXXXXXXXXSQAYHAIFDVASREPYSHLKLSELLCKSKAQGVPLSVDSACLLIR 597
            EL+ K          ++ Y+ + D   R       +S +  + K +G+   V +   +I+
Sbjct: 396  ELLLKMKMEKGCVPNTRTYNCLVDGYCRAGQLDTAISAV-SRMKEEGIKPDVVTLNTMIK 454

Query: 596  RFERVGRIDESIKIFNDVETS--IKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPNSSF 423
               R   +  ++    D+E     K+     TL++ +   + +  A+   D+MV+   S 
Sbjct: 455  GICRHLGVSSAVSFLMDMEKEGLQKNVVTYMTLINAYCNVNNIEKAIHWFDQMVEAGCS- 513

Query: 422  PPNDLTGSIVFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGN 243
                   + +F AL+      R     +   +V KL       D M    L+   C    
Sbjct: 514  -----PDAKIFYALISGLCQAR--RDHDALAMVEKLKRAGFALDLMAYNMLIGLFCDKNK 566

Query: 242  TNQAWELLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGI 63
             ++ +E+L  +       ++ + NTL++  G+  DF+ ++ ++ +MK  G  PN +T+G 
Sbjct: 567  ADEVYEMLTDMEGAGMKPDSITYNTLISYFGKLKDFESVHRMMEKMKKDGFFPNVVTYGA 626

Query: 62   LIHHLCKMHRVDEALQVLD 6
            +IH  C   +++EAL+V +
Sbjct: 627  IIHACCSSGKLNEALKVFN 645


>ref|XP_006292416.1| hypothetical protein CARUB_v10018630mg [Capsella rubella]
           gi|482561123|gb|EOA25314.1| hypothetical protein
           CARUB_v10018630mg [Capsella rubella]
          Length = 767

 Score =  195 bits (495), Expect = 3e-47
 Identities = 113/312 (36%), Positives = 186/312 (59%), Gaps = 6/312 (1%)
 Frame = -1

Query: 920 ELLERLQS-NEEDW-NQEELDHLVSSISPSNRIV--QVIRRLGNSAKAIKFLELIQKXXX 753
           + LE LQ   + DW + E L  L+ S S  + +V  Q+ RRLG+ + AI F E +     
Sbjct: 47  KFLENLQRLPQHDWASSESLSSLLVSSSSVSPLVFPQITRRLGSYSLAISFFEYLDATSQ 106

Query: 752 XXXXXXXSQAY--HAIFDVASREPYSHLKLSELLCKSKAQGVPLSVDSACLLIRRFERVG 579
                  S +    ++ + A  EP S  KL +L   +  + +P +V +  LLIR F R+G
Sbjct: 107 SLKRREESLSLTLQSVIEFAGSEPDSQDKLLQLYEIAIEKNIPFTVVATKLLIRWFGRMG 166

Query: 578 RIDESIKIFNDVETSIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQPNSSFPPNDLTGS 399
            +++S+ ++  +++++K+T + N +++V  +   V +A ++LDEM Q +S FPPN +T  
Sbjct: 167 MVNQSVLVYERLDSNMKNTQVRNVVIEVLLRNGLVDDAFKVLDEMFQKDSVFPPNRITAD 226

Query: 398 IVFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELL 219
           IV   + K    G++L+   +  L+S+   H V P+S+ LT+ +T LC+NG TN AW++L
Sbjct: 227 IVLHEVWK----GKLLTEENIIGLISRFSSHGVSPNSVWLTRFITSLCKNGRTNAAWDIL 282

Query: 218 HALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKM 39
             LM  N P+EA   NTLL+ LGR ++  RMN L+ +M + GI+P+ +T G+LI+ LCK 
Sbjct: 283 SDLMENNAPLEAPPFNTLLSCLGRNMNIGRMNALVLKMDEMGIRPDVVTLGVLINTLCKS 342

Query: 38  HRVDEALQVLDK 3
            R+DEAL+V ++
Sbjct: 343 RRIDEALEVFEQ 354



 Score = 62.0 bits (149), Expect = 3e-07
 Identities = 44/220 (20%), Positives = 103/220 (46%), Gaps = 2/220 (0%)
 Frame = -1

Query: 665  ELLCKSKAQGVPLSVDSACLLIRRFERVGRIDESIKIFNDVETSIKDTHLCN--TLLDVF 492
            E++ K K +G+  +V +   ++    R   ++ ++    D+E      ++    TL+   
Sbjct: 427  EVVSKMKEEGIKPNVVTLNTIVGGMCRHHGLNMAVLFLMDMEKEGVKGNVITYMTLIHAC 486

Query: 491  FKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLPGRVLSGGEVTELVSKLG 312
               + +  A+   ++M++   S        + ++ AL+      +V    +V  +V KL 
Sbjct: 487  CYVNNIEKAMHWYEKMLEAGCS------PDAKIYYALISGLC--QVRREHDVIRVVEKLK 538

Query: 311  EHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRALDFK 132
            E     D +    L+   C   NT + +E+L  + +     ++ + NTL++  G+  DF+
Sbjct: 539  ERGFSLDLLAYNMLIGLFCDKNNTEKVYEMLRDMEKEGMKPDSITYNTLISFFGKLKDFE 598

Query: 131  RMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQV 12
             +  ++ EM++ G+ P  +T+G +I   C +  ++EA+++
Sbjct: 599  SVQRMMEEMREDGLDPTVVTYGAVIDAYCSVGELNEAVKL 638


>ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297324225|gb|EFH54646.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 766

 Score =  194 bits (494), Expect = 3e-47
 Identities = 115/324 (35%), Positives = 189/324 (58%), Gaps = 5/324 (1%)
 Frame = -1

Query: 959 EAKAKKPNWVLTNELLERLQSNEEDW-NQEELDHLVSSISPSNRIV--QVIRRLGNSAKA 789
           E K++   +V+   L    +  + DW + E L  L+ S S  + +V  Q+ RRLG+ + A
Sbjct: 35  EIKSESQEFVVVKFLKNLQKIPQHDWASSESLSSLLVSSSSHSPLVFSQITRRLGSYSLA 94

Query: 788 IKFLELI--QKXXXXXXXXXXSQAYHAIFDVASREPYSHLKLSELLCKSKAQGVPLSVDS 615
           I F E +  +           S A  ++ + A  EP S  KL  L   +K + +PL+V +
Sbjct: 95  ISFFEYLDSKSQSLKRREESLSLALQSVIEFAGSEPDSRDKLLRLYEIAKEKNIPLTVVA 154

Query: 614 ACLLIRRFERVGRIDESIKIFNDVETSIKDTHLCNTLLDVFFKADRVHNALQLLDEMVQP 435
             LLIR F R+G  ++S+ ++  +++++K++ + N ++DV  +   V +A ++LDEM+Q 
Sbjct: 155 TKLLIRWFGRMGMANQSVLVYERLDSNMKNSQVRNVVIDVLLRNGLVDDAFKVLDEMLQK 214

Query: 434 NSSFPPNDLTGSIVFTALLKRNLPGRVLSGGEVTELVSKLGEHDVFPDSMRLTKLVTKLC 255
            S FPPN +T  IV   + K    GR+L+  ++  L+S+   H V P+S+ LT+ ++ LC
Sbjct: 215 ESVFPPNRITADIVLHEVWK----GRLLTEEKIIGLISRFSSHGVSPNSVWLTRFISSLC 270

Query: 254 RNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRALDFKRMNLLLAEMKDTGIKPNAI 75
           +N  TN AW++L  LM+   P+EA   N LL+ LGR ++  RMN L+ +M +  I+P+ +
Sbjct: 271 KNARTNAAWDILSDLMKNKAPLEAPPFNALLSCLGRNMNIGRMNALVLKMDEMKIRPDVV 330

Query: 74  TFGILIHHLCKMHRVDEALQVLDK 3
           T GILI+ LCK  RVDEALQV ++
Sbjct: 331 TLGILINTLCKSRRVDEALQVFEQ 354



 Score = 60.5 bits (145), Expect = 1e-06
 Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 3/226 (1%)
 Frame = -1

Query: 671 LSELLCKSKA--QGVPLSVDSACLLIRRFERVGRIDESIKIFNDVETSIKDTHLCNTLLD 498
           LS+L+ K+KA  +  P +   +CL   R   +GR++  +   ++++    D      L++
Sbjct: 282 LSDLM-KNKAPLEAPPFNALLSCL--GRNMNIGRMNALVLKMDEMKIR-PDVVTLGILIN 337

Query: 497 VFFKADRVHNALQLLDEMVQPNSSFPPNDLTGSIVFTALLKRNLP-GRVLSGGEVTELVS 321
              K+ RV  ALQ+ ++M    +         SI F  L+      GR+    E+  LV 
Sbjct: 338 TLCKSRRVDEALQVFEQMCGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEEL--LVR 395

Query: 320 KLGEHDVFPDSMRLTKLVTKLCRNGNTNQAWELLHALMRMNCPVEAASCNTLLAGLGRAL 141
              E    P+++    L+   CR G    A E++  +       +  + NT++ G+ R  
Sbjct: 396 MKMEERCVPNTVTYNCLIDGYCRAGKLETAKEVVSRMKEDGIKPDVVTVNTIVGGMCRHH 455

Query: 140 DFKRMNLLLAEMKDTGIKPNAITFGILIHHLCKMHRVDEALQVLDK 3
                 L   +M+  G+K N +T+  LIH  C +  +++A+   DK
Sbjct: 456 GLNMAVLFFMDMEKEGVKGNVVTYMTLIHACCSLSNIEKAMHWFDK 501