BLASTX nr result
ID: Cocculus23_contig00030695
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00030695
(245 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containi... 85 1e-14
emb|CBI24234.3| unnamed protein product [Vitis vinifera] 85 1e-14
emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera] 85 1e-14
gb|EXB92320.1| hypothetical protein L484_004640 [Morus notabilis] 79 7e-13
gb|EXB44142.1| hypothetical protein L484_005294 [Morus notabilis] 79 7e-13
ref|XP_002527053.1| pentatricopeptide repeat-containing protein,... 78 1e-12
ref|XP_006470579.1| PREDICTED: pentatricopeptide repeat-containi... 77 2e-12
ref|XP_006446275.1| hypothetical protein CICLE_v10017597mg [Citr... 77 2e-12
ref|XP_007219118.1| hypothetical protein PRUPE_ppa015795mg, part... 77 2e-12
ref|XP_004237581.1| PREDICTED: pentatricopeptide repeat-containi... 77 2e-12
ref|XP_002299984.2| hypothetical protein POPTR_0001s28320g [Popu... 77 3e-12
ref|XP_007015298.1| Tetratricopeptide repeat (TPR)-like superfam... 75 9e-12
ref|XP_006338777.1| PREDICTED: pentatricopeptide repeat-containi... 74 3e-11
ref|XP_006398652.1| hypothetical protein EUTSA_v10012778mg [Eutr... 74 3e-11
ref|XP_006398651.1| hypothetical protein EUTSA_v10012778mg [Eutr... 74 3e-11
ref|XP_004293147.1| PREDICTED: pentatricopeptide repeat-containi... 73 4e-11
ref|NP_195731.1| pentatricopeptide repeat-containing protein [Ar... 73 5e-11
ref|XP_002870941.1| pentatricopeptide repeat-containing protein ... 71 1e-10
ref|XP_006595772.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 71 2e-10
ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 70 4e-10
>ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Vitis vinifera]
Length = 746
Score = 84.7 bits (208), Expect = 1e-14
Identities = 40/62 (64%), Positives = 47/62 (75%)
Frame = +1
Query: 52 MSAKGLKPGNVSYNAVINCLCKNGKYVNAKETLGEMVRSGLIPDTSTYNILLGECCRTDN 231
MS KGLKP +YNA+IN LCK GKY+ AK L EM++ G+ PDT+TYNILL ECCR DN
Sbjct: 315 MSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDN 374
Query: 232 *M 237
M
Sbjct: 375 MM 376
>emb|CBI24234.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 84.7 bits (208), Expect = 1e-14
Identities = 40/62 (64%), Positives = 47/62 (75%)
Frame = +1
Query: 52 MSAKGLKPGNVSYNAVINCLCKNGKYVNAKETLGEMVRSGLIPDTSTYNILLGECCRTDN 231
MS KGLKP +YNA+IN LCK GKY+ AK L EM++ G+ PDT+TYNILL ECCR DN
Sbjct: 158 MSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDN 217
Query: 232 *M 237
M
Sbjct: 218 MM 219
>emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
Length = 850
Score = 84.7 bits (208), Expect = 1e-14
Identities = 40/62 (64%), Positives = 47/62 (75%)
Frame = +1
Query: 52 MSAKGLKPGNVSYNAVINCLCKNGKYVNAKETLGEMVRSGLIPDTSTYNILLGECCRTDN 231
MS KGLKP +YNA+IN LCK GKY+ AK L EM++ G+ PDT+TYNILL ECCR DN
Sbjct: 419 MSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDN 478
Query: 232 *M 237
M
Sbjct: 479 MM 480
>gb|EXB92320.1| hypothetical protein L484_004640 [Morus notabilis]
Length = 539
Score = 79.0 bits (193), Expect = 7e-13
Identities = 38/62 (61%), Positives = 44/62 (70%)
Frame = +1
Query: 46 NLMSAKGLKPGNVSYNAVINCLCKNGKYVNAKETLGEMVRSGLIPDTSTYNILLGECCRT 225
NLMS KGL+PG +YN +IN LCK G AKE L EM+ GL PDT+TYN LL E CRT
Sbjct: 375 NLMSCKGLRPGLFTYNTIINGLCKAGNCARAKEVLDEMLWLGLNPDTTTYNALLSESCRT 434
Query: 226 DN 231
+N
Sbjct: 435 NN 436
>gb|EXB44142.1| hypothetical protein L484_005294 [Morus notabilis]
Length = 298
Score = 79.0 bits (193), Expect = 7e-13
Identities = 38/62 (61%), Positives = 44/62 (70%)
Frame = +1
Query: 46 NLMSAKGLKPGNVSYNAVINCLCKNGKYVNAKETLGEMVRSGLIPDTSTYNILLGECCRT 225
NLMS KGL+PG +YN +IN LCK G AKE L EM+ GL PDT+TYN LL E CRT
Sbjct: 102 NLMSCKGLRPGLFTYNTIINGLCKAGNCARAKEVLDEMLWLGLNPDTTTYNALLSESCRT 161
Query: 226 DN 231
+N
Sbjct: 162 NN 163
>ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223533615|gb|EEF35353.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 677
Score = 77.8 bits (190), Expect = 1e-12
Identities = 38/64 (59%), Positives = 44/64 (68%)
Frame = +1
Query: 40 INNLMSAKGLKPGNVSYNAVINCLCKNGKYVNAKETLGEMVRSGLIPDTSTYNILLGECC 219
+ N MS KGLKP +YNAVIN LCK G+YV AK EM+ GL PDT+TYN LL E C
Sbjct: 242 VMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESC 301
Query: 220 RTDN 231
R +N
Sbjct: 302 RNNN 305
>ref|XP_006470579.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Citrus sinensis]
Length = 752
Score = 77.0 bits (188), Expect = 2e-12
Identities = 37/62 (59%), Positives = 45/62 (72%)
Frame = +1
Query: 46 NLMSAKGLKPGNVSYNAVINCLCKNGKYVNAKETLGEMVRSGLIPDTSTYNILLGECCRT 225
N MS KGLKPG +YN++IN LCK G+ AKE L EM++ GL PDT+TYN LL E CR
Sbjct: 319 NSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRK 378
Query: 226 DN 231
+N
Sbjct: 379 EN 380
>ref|XP_006446275.1| hypothetical protein CICLE_v10017597mg [Citrus clementina]
gi|557548886|gb|ESR59515.1| hypothetical protein
CICLE_v10017597mg [Citrus clementina]
Length = 732
Score = 77.0 bits (188), Expect = 2e-12
Identities = 37/62 (59%), Positives = 45/62 (72%)
Frame = +1
Query: 46 NLMSAKGLKPGNVSYNAVINCLCKNGKYVNAKETLGEMVRSGLIPDTSTYNILLGECCRT 225
N MS KGLKPG +YN++IN LCK G+ AKE L EM++ GL PDT+TYN LL E CR
Sbjct: 299 NSMSGKGLKPGVFTYNSLINGLCKKGRCDRAKEVLDEMLQMGLSPDTATYNTLLVESCRK 358
Query: 226 DN 231
+N
Sbjct: 359 EN 360
>ref|XP_007219118.1| hypothetical protein PRUPE_ppa015795mg, partial [Prunus persica]
gi|462415580|gb|EMJ20317.1| hypothetical protein
PRUPE_ppa015795mg, partial [Prunus persica]
Length = 512
Score = 77.0 bits (188), Expect = 2e-12
Identities = 37/64 (57%), Positives = 45/64 (70%)
Frame = +1
Query: 40 INNLMSAKGLKPGNVSYNAVINCLCKNGKYVNAKETLGEMVRSGLIPDTSTYNILLGECC 219
+ N MS KGL+P +YNA+IN LCK G Y AKE L EM+ +GL PDT+TYN LL E C
Sbjct: 174 LKNSMSCKGLRPEVFTYNAIINGLCKVGNYARAKEILYEMLNNGLSPDTTTYNTLLVESC 233
Query: 220 RTDN 231
R D+
Sbjct: 234 RKDD 237
>ref|XP_004237581.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Solanum lycopersicum]
Length = 738
Score = 77.0 bits (188), Expect = 2e-12
Identities = 34/62 (54%), Positives = 45/62 (72%)
Frame = +1
Query: 46 NLMSAKGLKPGNVSYNAVINCLCKNGKYVNAKETLGEMVRSGLIPDTSTYNILLGECCRT 225
N+M A GL+P ++YN+++N LCKNG+Y A+E L EM GL PDT++YN LL ECCR
Sbjct: 305 NIMKATGLRPCLLTYNSILNGLCKNGQYGRARELLVEMEECGLAPDTTSYNALLAECCRA 364
Query: 226 DN 231
N
Sbjct: 365 GN 366
>ref|XP_002299984.2| hypothetical protein POPTR_0001s28320g [Populus trichocarpa]
gi|550348376|gb|EEE84789.2| hypothetical protein
POPTR_0001s28320g [Populus trichocarpa]
Length = 519
Score = 76.6 bits (187), Expect = 3e-12
Identities = 38/64 (59%), Positives = 44/64 (68%)
Frame = +1
Query: 40 INNLMSAKGLKPGNVSYNAVINCLCKNGKYVNAKETLGEMVRSGLIPDTSTYNILLGECC 219
I N M+ KGLKP +YNA+IN LCK G+Y AK L EM+ GL PDT+TYN LL E C
Sbjct: 175 IMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESC 234
Query: 220 RTDN 231
R DN
Sbjct: 235 RRDN 238
>ref|XP_007015298.1| Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1
[Theobroma cacao] gi|590584881|ref|XP_007015299.1|
Tetratricopeptide repeat (TPR)-like superfamily protein
isoform 1 [Theobroma cacao]
gi|590584884|ref|XP_007015300.1| Tetratricopeptide
repeat (TPR)-like superfamily protein isoform 1
[Theobroma cacao] gi|508785661|gb|EOY32917.1|
Tetratricopeptide repeat (TPR)-like superfamily protein
isoform 1 [Theobroma cacao] gi|508785662|gb|EOY32918.1|
Tetratricopeptide repeat (TPR)-like superfamily protein
isoform 1 [Theobroma cacao] gi|508785663|gb|EOY32919.1|
Tetratricopeptide repeat (TPR)-like superfamily protein
isoform 1 [Theobroma cacao]
Length = 727
Score = 75.1 bits (183), Expect = 9e-12
Identities = 36/62 (58%), Positives = 43/62 (69%)
Frame = +1
Query: 46 NLMSAKGLKPGNVSYNAVINCLCKNGKYVNAKETLGEMVRSGLIPDTSTYNILLGECCRT 225
N MS KGLKPG +YNA++ LCK G + AKE L EM+ GL PDT+TYN LL E CR
Sbjct: 294 NSMSDKGLKPGLFTYNAIVYGLCKRGNFEKAKEALDEMLHIGLSPDTATYNTLLVESCRK 353
Query: 226 DN 231
+N
Sbjct: 354 NN 355
>ref|XP_006338777.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Solanum tuberosum]
Length = 730
Score = 73.6 bits (179), Expect = 3e-11
Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Frame = +1
Query: 46 NLMSAKGLKPGNVSYNAVINCLCKNGKYVNAKE-TLGEMVRSGLIPDTSTYNILLGECCR 222
N+M A GL+P ++YN+++N LCKNG+Y A++ L EM SGL PDT++YN LL ECC+
Sbjct: 296 NIMKATGLRPCLLTYNSILNGLCKNGQYGRARDLLLVEMEESGLSPDTASYNALLAECCK 355
Query: 223 TDN 231
T N
Sbjct: 356 TGN 358
>ref|XP_006398652.1| hypothetical protein EUTSA_v10012778mg [Eutrema salsugineum]
gi|557099742|gb|ESQ40105.1| hypothetical protein
EUTSA_v10012778mg [Eutrema salsugineum]
Length = 736
Score = 73.6 bits (179), Expect = 3e-11
Identities = 34/59 (57%), Positives = 41/59 (69%)
Frame = +1
Query: 46 NLMSAKGLKPGNVSYNAVINCLCKNGKYVNAKETLGEMVRSGLIPDTSTYNILLGECCR 222
N M +KG PG +YN VIN LCKNGKY AKE EM++SGL PD++TY LL E C+
Sbjct: 301 NAMPSKGFSPGVYTYNTVINGLCKNGKYERAKEIFAEMLKSGLSPDSTTYRSLLMEACK 359
>ref|XP_006398651.1| hypothetical protein EUTSA_v10012778mg [Eutrema salsugineum]
gi|557099741|gb|ESQ40104.1| hypothetical protein
EUTSA_v10012778mg [Eutrema salsugineum]
Length = 703
Score = 73.6 bits (179), Expect = 3e-11
Identities = 34/59 (57%), Positives = 41/59 (69%)
Frame = +1
Query: 46 NLMSAKGLKPGNVSYNAVINCLCKNGKYVNAKETLGEMVRSGLIPDTSTYNILLGECCR 222
N M +KG PG +YN VIN LCKNGKY AKE EM++SGL PD++TY LL E C+
Sbjct: 268 NAMPSKGFSPGVYTYNTVINGLCKNGKYERAKEIFAEMLKSGLSPDSTTYRSLLMEACK 326
>ref|XP_004293147.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Fragaria vesca subsp. vesca]
Length = 729
Score = 73.2 bits (178), Expect = 4e-11
Identities = 33/64 (51%), Positives = 47/64 (73%)
Frame = +1
Query: 40 INNLMSAKGLKPGNVSYNAVINCLCKNGKYVNAKETLGEMVRSGLIPDTSTYNILLGECC 219
+ N M++KGL+P +YNA++N LC+ G Y AKE L E++++GL PDT+T+N LL E C
Sbjct: 294 LKNSMASKGLRPEVFTYNAIMNGLCRVGNYARAKEVLYEILQNGLNPDTTTFNTLLVESC 353
Query: 220 RTDN 231
R DN
Sbjct: 354 RKDN 357
>ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At5g01110 gi|6759434|emb|CAB69839.1| putative protein
[Arabidopsis thaliana] gi|28973740|gb|AAO64186.1|
unknown protein [Arabidopsis thaliana]
gi|110736884|dbj|BAF00399.1| hypothetical protein
[Arabidopsis thaliana] gi|332002917|gb|AED90300.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 729
Score = 72.8 bits (177), Expect = 5e-11
Identities = 34/59 (57%), Positives = 40/59 (67%)
Frame = +1
Query: 46 NLMSAKGLKPGNVSYNAVINCLCKNGKYVNAKETLGEMVRSGLIPDTSTYNILLGECCR 222
N M KG PG +YN VIN LCK+GKY AKE EM+RSGL PD++TY LL E C+
Sbjct: 294 NAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACK 352
>ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297316778|gb|EFH47200.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 719
Score = 71.2 bits (173), Expect = 1e-10
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = +1
Query: 52 MSAKGLKPGNVSYNAVINCLCKNGKYVNAKETLGEMVRSGLIPDTSTYNILLGECCR 222
M +KG PG +YN VIN LCK+GKY AKE EM+RSGL PD++TY LL E C+
Sbjct: 286 MPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACK 342
>ref|XP_006595772.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g01110-like [Glycine max]
Length = 646
Score = 70.9 bits (172), Expect = 2e-10
Identities = 33/62 (53%), Positives = 41/62 (66%)
Frame = +1
Query: 46 NLMSAKGLKPGNVSYNAVINCLCKNGKYVNAKETLGEMVRSGLIPDTSTYNILLGECCRT 225
N M GLKPG +YNA++N LCK G YV A+ EM+ GL PD +T+N LL ECCR
Sbjct: 213 NSMWGLGLKPGLYTYNAIVNGLCKKGDYVRARGVFDEMLGMGLSPDAATFNPLLVECCRK 272
Query: 226 DN 231
D+
Sbjct: 273 DD 274
>ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g01110-like [Cucumis sativus]
Length = 749
Score = 69.7 bits (169), Expect = 4e-10
Identities = 32/62 (51%), Positives = 45/62 (72%)
Frame = +1
Query: 46 NLMSAKGLKPGNVSYNAVINCLCKNGKYVNAKETLGEMVRSGLIPDTSTYNILLGECCRT 225
N S++G++PG ++YNA++ LCK GKY AK+ L EM++ GL P+ +TYN LL E CR
Sbjct: 316 NSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRR 375
Query: 226 DN 231
DN
Sbjct: 376 DN 377