BLASTX nr result
ID: Cocculus23_contig00030680
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00030680
(310 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002321881.2| hypothetical protein POPTR_0015s13760g [Popu... 64 2e-08
ref|XP_004513686.1| PREDICTED: zinc finger CCCH domain-containin... 62 6e-08
ref|XP_004953439.1| PREDICTED: zinc finger CCCH domain-containin... 62 1e-07
ref|XP_002510854.1| F-box and wd40 domain protein, putative [Ric... 59 7e-07
ref|XP_003634083.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger ... 59 9e-07
ref|XP_002280396.1| PREDICTED: zinc finger CCCH domain-containin... 59 9e-07
emb|CAN69868.1| hypothetical protein VITISV_020240 [Vitis vinifera] 59 9e-07
ref|XP_003634051.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger ... 58 2e-06
ref|XP_004308123.1| PREDICTED: zinc finger CCCH domain-containin... 57 2e-06
ref|XP_006353383.1| PREDICTED: zinc finger CCCH domain-containin... 57 3e-06
ref|XP_004234345.1| PREDICTED: zinc finger CCCH domain-containin... 57 3e-06
gb|AFW72792.1| hypothetical protein ZEAMMB73_250148 [Zea mays] 57 3e-06
ref|NP_001131242.1| uncharacterized protein LOC100192554 [Zea ma... 57 3e-06
ref|XP_007152351.1| hypothetical protein PHAVU_004G122600g [Phas... 57 3e-06
ref|XP_002454483.1| hypothetical protein SORBIDRAFT_04g031930 [S... 57 3e-06
ref|XP_002867609.1| hypothetical protein ARALYDRAFT_329122 [Arab... 56 6e-06
gb|EEE57568.1| hypothetical protein OsJ_07917 [Oryza sativa Japo... 55 8e-06
gb|EEC73779.1| hypothetical protein OsI_08459 [Oryza sativa Indi... 55 8e-06
sp|Q0DYP5.2|C3H17_ORYSJ RecName: Full=Zinc finger CCCH domain-co... 55 8e-06
dbj|BAG95502.1| unnamed protein product [Oryza sativa Japonica G... 55 8e-06
>ref|XP_002321881.2| hypothetical protein POPTR_0015s13760g [Populus trichocarpa]
gi|550322663|gb|EEF06008.2| hypothetical protein
POPTR_0015s13760g [Populus trichocarpa]
Length = 454
Score = 63.9 bits (154), Expect = 2e-08
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Frame = -2
Query: 309 VCKYWRAGRCNRYPCPYLHNELP-----EIYNNGTAPKPPHLKNVSASLTTTGRKPNAYL 145
VC +WRAGRCNR+PCP+LH EL N G K + N S+S + +GR+ N
Sbjct: 42 VCYHWRAGRCNRFPCPFLHRELSAPPTHAAVNGGVGAKRGFVGNDSSSSSFSGRRGNNGT 101
Query: 144 N-SNQQFSSKWVRDDGKG 94
N +N +S+ W R KG
Sbjct: 102 NGNNSNYSNSWGRFGNKG 119
>ref|XP_004513686.1| PREDICTED: zinc finger CCCH domain-containing protein 48-like
[Cicer arietinum]
Length = 437
Score = 62.4 bits (150), Expect = 6e-08
Identities = 30/73 (41%), Positives = 42/73 (57%)
Frame = -2
Query: 309 VCKYWRAGRCNRYPCPYLHNELPEIYNNGTAPKPPHLKNVSASLTTTGRKPNAYLNSNQQ 130
VC W+AG+C+RYPCP+LH+ELP NG K P+ ++S +GR+ A N+
Sbjct: 27 VCFQWQAGKCSRYPCPFLHSELPSFNGNGAPSKRPYGSGENSSF--SGRRGGASFNT--- 81
Query: 129 FSSKWVRDDGKGR 91
W R G+GR
Sbjct: 82 ----WGRGGGRGR 90
>ref|XP_004953439.1| PREDICTED: zinc finger CCCH domain-containing protein 17-like
[Setaria italica]
Length = 428
Score = 61.6 bits (148), Expect = 1e-07
Identities = 38/93 (40%), Positives = 45/93 (48%)
Frame = -2
Query: 309 VCKYWRAGRCNRYPCPYLHNELPEIYNNGTAPKPPHLKNVSASLTTTGRKPNAYLNSNQQ 130
VC YWRAGRCNR+PCPYLH+ELPE A PP K S R PN+
Sbjct: 33 VCNYWRAGRCNRFPCPYLHSELPE------AAAPP--KRPSGPGGNVWRNPNSG-GRGGG 83
Query: 129 FSSKWVRDDGKGRKPNAHLNSNQQFSSKRAGGD 31
++W R G G AH ++ AG D
Sbjct: 84 GHNRWGRGPGGGSGTAAHRPPDRPCKYFLAGTD 116
>ref|XP_002510854.1| F-box and wd40 domain protein, putative [Ricinus communis]
gi|223549969|gb|EEF51456.1| F-box and wd40 domain
protein, putative [Ricinus communis]
Length = 445
Score = 58.9 bits (141), Expect = 7e-07
Identities = 26/58 (44%), Positives = 31/58 (53%)
Frame = -2
Query: 309 VCKYWRAGRCNRYPCPYLHNELPEIYNNGTAPKPPHLKNVSASLTTTGRKPNAYLNSN 136
VC +WRAGRCNR+PCPYLH ELP P PPH N +S + N +
Sbjct: 36 VCHHWRAGRCNRFPCPYLHRELP-------PPPPPHGSNGHSSSNNNAPSKRGFSNDS 86
>ref|XP_003634083.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing
protein 48-like [Vitis vinifera]
Length = 249
Score = 58.5 bits (140), Expect = 9e-07
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Frame = -2
Query: 309 VCKYWRAGRCNRYPCPYLHNELPEIYNNGTAPKP----PHLKNVSASLTTTGRKPNAYLN 142
VC +WRAGRCN++PCPYLH ELP AP P P + N S+S ++PN ++
Sbjct: 27 VCYHWRAGRCNKFPCPYLHRELP-------APPPEQYQPFISNGSSS-----KRPNQGVH 74
Query: 141 SNQQFSSKWVRDDGKGRKPN 82
++ FS G R PN
Sbjct: 75 DDRSFS-------GARRSPN 87
>ref|XP_002280396.1| PREDICTED: zinc finger CCCH domain-containing protein 48 [Vitis
vinifera] gi|297741123|emb|CBI31854.3| unnamed protein
product [Vitis vinifera]
Length = 442
Score = 58.5 bits (140), Expect = 9e-07
Identities = 31/76 (40%), Positives = 42/76 (55%)
Frame = -2
Query: 309 VCKYWRAGRCNRYPCPYLHNELPEIYNNGTAPKPPHLKNVSASLTTTGRKPNAYLNSNQQ 130
VC +WRAGRCN++PCPYLH ELP AP PP S ++ ++PN ++ ++
Sbjct: 27 VCYHWRAGRCNKFPCPYLHRELP-------AP-PPQQHQPFISNGSSSKRPNQGVHDDRS 78
Query: 129 FSSKWVRDDGKGRKPN 82
FS G R PN
Sbjct: 79 FS-------GARRSPN 87
>emb|CAN69868.1| hypothetical protein VITISV_020240 [Vitis vinifera]
Length = 210
Score = 58.5 bits (140), Expect = 9e-07
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Frame = -2
Query: 309 VCKYWRAGRCNRYPCPYLHNELPEIYNNGTAPKP----PHLKNVSASLTTTGRKPNAYLN 142
VC +WRAGRCN++PCPYLH ELP AP P P + N S+S ++PN ++
Sbjct: 27 VCYHWRAGRCNKFPCPYLHRELP-------APPPEQYQPFISNGSSS-----KRPNQGVH 74
Query: 141 SNQQFSSKWVRDDGKGRKPN 82
++ FS G R PN
Sbjct: 75 DDRSFS-------GARRSPN 87
>ref|XP_003634051.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing
protein 48-like [Vitis vinifera]
Length = 274
Score = 57.8 bits (138), Expect = 2e-06
Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Frame = -2
Query: 309 VCKYWRAGRCNRYPCPYLHNELPEIYNNGTAPKP----PHLKNVSASLTTTGRKPNAYLN 142
VC WRAGRCN++PCPYLH ELP AP P P + N S+S ++PN ++
Sbjct: 27 VCYRWRAGRCNKFPCPYLHRELP-------APPPEQYQPFISNGSSS-----KRPNQGVH 74
Query: 141 SNQQFSSKWVRDDGKGRKPNAHLNSNQ 61
++ FS G R PN L +
Sbjct: 75 DDRSFS-------GARRSPNLILRGGE 94
>ref|XP_004308123.1| PREDICTED: zinc finger CCCH domain-containing protein 48-like
[Fragaria vesca subsp. vesca]
Length = 439
Score = 57.4 bits (137), Expect = 2e-06
Identities = 34/78 (43%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Frame = -2
Query: 309 VCKYWRAGRCNRYPCPYLHNELPEIYN---NGTA-PKPPH--LKNVSASLTTTGRKPNAY 148
VC +WRAG+CNR+PCPYLH ELP + NGTA K H N GR PN +
Sbjct: 29 VCYHWRAGKCNRHPCPYLHRELPSPPSHGLNGTASSKRQHGFAANTDGPSGPRGRGPNNF 88
Query: 147 LNSNQQFSSKWVRDDGKG 94
S+ W R G G
Sbjct: 89 SGGG---SNTWGRSGGGG 103
>ref|XP_006353383.1| PREDICTED: zinc finger CCCH domain-containing protein 48-like
[Solanum tuberosum]
Length = 432
Score = 57.0 bits (136), Expect = 3e-06
Identities = 30/98 (30%), Positives = 46/98 (46%)
Frame = -2
Query: 309 VCKYWRAGRCNRYPCPYLHNELPEIYNNGTAPKPPHLKNVSASLTTTGRKPNAYLNSNQQ 130
VC +WRAGRCNR+PCP+LH ELP P ++ + + ++ ++P+ +
Sbjct: 29 VCFHWRAGRCNRFPCPFLHRELP-------GPPQQQQQHAAGNGMSSSKRPHGF------ 75
Query: 129 FSSKWVRDDGKGRKPNAHLNSNQQFSSKRAGGDEADRK 16
DD +G + N N + AGG RK
Sbjct: 76 ------SDDNRGAGMRRNPNFNNTWGRTAAGGGAVVRK 107
>ref|XP_004234345.1| PREDICTED: zinc finger CCCH domain-containing protein 48-like
[Solanum lycopersicum]
Length = 431
Score = 57.0 bits (136), Expect = 3e-06
Identities = 32/98 (32%), Positives = 47/98 (47%)
Frame = -2
Query: 309 VCKYWRAGRCNRYPCPYLHNELPEIYNNGTAPKPPHLKNVSASLTTTGRKPNAYLNSNQQ 130
VC +WRAGRCNR+PCP+LH ELP P ++ + + ++ ++P+ + + N
Sbjct: 29 VCFHWRAGRCNRFPCPFLHRELP--------GPPQQQQHAAGNGMSSSKRPHGFSDDN-- 78
Query: 129 FSSKWVRDDGKGRKPNAHLNSNQQFSSKRAGGDEADRK 16
R G R P N N + AGG RK
Sbjct: 79 ------RGSGMRRNP----NFNNTWGRTAAGGGAVVRK 106
>gb|AFW72792.1| hypothetical protein ZEAMMB73_250148 [Zea mays]
Length = 350
Score = 57.0 bits (136), Expect = 3e-06
Identities = 32/83 (38%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = -2
Query: 309 VCKYWRAGRCNRYPCPYLHNELPEIYNNGTAPKPPHLKNVSASLTTTGRKPNAYLNSNQ- 133
VC YWRAGRCNR+PCP+LH+ELPE PK P TG N + N N
Sbjct: 33 VCNYWRAGRCNRFPCPFLHSELPE----AAPPKRP-----------TGPGGNVWRNPNTG 77
Query: 132 ----QFSSKWVRDDGKGRKPNAH 76
++W + G G +H
Sbjct: 78 GRGGGHHNRWGKGPGGGSGIASH 100
>ref|NP_001131242.1| uncharacterized protein LOC100192554 [Zea mays]
gi|194690974|gb|ACF79571.1| unknown [Zea mays]
gi|195649475|gb|ACG44205.1| nucleic acid binding protein
[Zea mays] gi|407232732|gb|AFT82708.1| C3H34 C3H type
transcription factor, partial [Zea mays subsp. mays]
gi|413938240|gb|AFW72791.1| nucleic acid binding protein
[Zea mays]
Length = 427
Score = 57.0 bits (136), Expect = 3e-06
Identities = 32/83 (38%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = -2
Query: 309 VCKYWRAGRCNRYPCPYLHNELPEIYNNGTAPKPPHLKNVSASLTTTGRKPNAYLNSNQ- 133
VC YWRAGRCNR+PCP+LH+ELPE PK P TG N + N N
Sbjct: 33 VCNYWRAGRCNRFPCPFLHSELPE----AAPPKRP-----------TGPGGNVWRNPNTG 77
Query: 132 ----QFSSKWVRDDGKGRKPNAH 76
++W + G G +H
Sbjct: 78 GRGGGHHNRWGKGPGGGSGIASH 100
>ref|XP_007152351.1| hypothetical protein PHAVU_004G122600g [Phaseolus vulgaris]
gi|561025660|gb|ESW24345.1| hypothetical protein
PHAVU_004G122600g [Phaseolus vulgaris]
Length = 424
Score = 56.6 bits (135), Expect = 3e-06
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = -2
Query: 309 VCKYWRAGRCNRYPCPYLHNELP-EIYNNGTAPKPPHLKNVSASLTTTGRKPNAYLNSNQ 133
VC +W+AG+CNRYPCP+LH+ELP + NG + K H +G +
Sbjct: 23 VCFHWQAGKCNRYPCPFLHSELPASSHANGASSKRAH--------DNSGLSGFSGQRGRS 74
Query: 132 QFSSKWVRDDGKG 94
F++ W R G+G
Sbjct: 75 NFNNSWGRGGGRG 87
>ref|XP_002454483.1| hypothetical protein SORBIDRAFT_04g031930 [Sorghum bicolor]
gi|241934314|gb|EES07459.1| hypothetical protein
SORBIDRAFT_04g031930 [Sorghum bicolor]
Length = 429
Score = 56.6 bits (135), Expect = 3e-06
Identities = 23/35 (65%), Positives = 26/35 (74%)
Frame = -2
Query: 309 VCKYWRAGRCNRYPCPYLHNELPEIYNNGTAPKPP 205
VC YWRAGRCNR+PCP+LH+ELPE PK P
Sbjct: 33 VCNYWRAGRCNRFPCPFLHSELPE----AAPPKRP 63
>ref|XP_002867609.1| hypothetical protein ARALYDRAFT_329122 [Arabidopsis lyrata subsp.
lyrata] gi|297313445|gb|EFH43868.1| hypothetical protein
ARALYDRAFT_329122 [Arabidopsis lyrata subsp. lyrata]
Length = 667
Score = 55.8 bits (133), Expect = 6e-06
Identities = 24/34 (70%), Positives = 25/34 (73%)
Frame = -2
Query: 309 VCKYWRAGRCNRYPCPYLHNELPEIYNNGTAPKP 208
VC +WRAGRCNRYPCPYLH ELP G AP P
Sbjct: 31 VCFHWRAGRCNRYPCPYLHRELP-----GPAPGP 59
>gb|EEE57568.1| hypothetical protein OsJ_07917 [Oryza sativa Japonica Group]
Length = 399
Score = 55.5 bits (132), Expect = 8e-06
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = -2
Query: 309 VCKYWRAGRCNRYPCPYLHNELPEIYNNGTAPKP 208
VC +WRAGRCNR+PCPYLH+ELPE TA +P
Sbjct: 33 VCIHWRAGRCNRFPCPYLHSELPE----ATAKRP 62
>gb|EEC73779.1| hypothetical protein OsI_08459 [Oryza sativa Indica Group]
Length = 435
Score = 55.5 bits (132), Expect = 8e-06
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = -2
Query: 309 VCKYWRAGRCNRYPCPYLHNELPEIYNNGTAPKP 208
VC +WRAGRCNR+PCPYLH+ELPE TA +P
Sbjct: 33 VCIHWRAGRCNRFPCPYLHSELPE----ATAKRP 62
>sp|Q0DYP5.2|C3H17_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 17;
Short=OsC3H17
Length = 435
Score = 55.5 bits (132), Expect = 8e-06
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = -2
Query: 309 VCKYWRAGRCNRYPCPYLHNELPEIYNNGTAPKP 208
VC +WRAGRCNR+PCPYLH+ELPE TA +P
Sbjct: 33 VCIHWRAGRCNRFPCPYLHSELPE----ATAKRP 62
>dbj|BAG95502.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 341
Score = 55.5 bits (132), Expect = 8e-06
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = -2
Query: 309 VCKYWRAGRCNRYPCPYLHNELPEIYNNGTAPKP 208
VC +WRAGRCNR+PCPYLH+ELPE TA +P
Sbjct: 33 VCIHWRAGRCNRFPCPYLHSELPE----ATAKRP 62