BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00030615
         (336 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   104   5e-23
emb|CAN68623.1| hypothetical protein VITISV_010681 [Vitis vinifera]   105   6e-22
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   105   8e-22
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...    95   9e-20
emb|CAN64002.1| hypothetical protein VITISV_023116 [Vitis vinifera]    97   1e-19
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...    92   2e-19
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...    95   2e-19
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol...    95   2e-19
gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Ho...    91   4e-19
gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subc...    91   4e-19
emb|CAN71138.1| hypothetical protein VITISV_008660 [Vitis vinifera]    97   4e-19
gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subc...    89   4e-18
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]    89   1e-17
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc...    88   1e-17
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...    88   1e-17
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...    87   1e-17
emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]    89   2e-17
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]      87   2e-17
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...    87   2e-17
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                   84   1e-16

>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  104 bits (260), Expect(2) = 5e-23
 Identities = 50/87 (57%), Positives = 58/87 (66%)
 Frame = +3

Query: 66  RKHRTVVEHXXXXXXXXXXPLKF*DEAFRTSVFLSNYLPTAVLNFSSPFQELFHTTPDYS 245
           RKHR +VEH          P K+ DEAFRTSV+L N LPT VL   SP + LFH  P YS
Sbjct: 667 RKHRHIVEHGIALLAQASLPFKYWDEAFRTSVYLINRLPTPVLKNKSPLEVLFHQKPSYS 726

Query: 246 SLKVFGCLCFPNTGAFNTNKLQFRSLP 326
            LKVFGC+C+PN   FN +KLQFRS+P
Sbjct: 727 XLKVFGCMCYPNLRPFNHHKLQFRSIP 753



 Score = 28.5 bits (62), Expect(2) = 5e-23
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 5   SQGIHH*ISCPATHKQN 55
           S GI H ISCP TH+QN
Sbjct: 646 SNGIIHRISCPYTHEQN 662


>emb|CAN68623.1| hypothetical protein VITISV_010681 [Vitis vinifera]
          Length = 846

 Score =  105 bits (263), Expect(2) = 6e-22
 Identities = 51/85 (60%), Positives = 60/85 (70%)
 Frame = +3

Query: 66  RKHRTVVEHXXXXXXXXXXPLKF*DEAFRTSVFLSNYLPTAVLNFSSPFQELFHTTPDYS 245
           RKHRT+VEH          PLKF DE+FRT V+LSN LPTAVL+   P + LF + PDYS
Sbjct: 266 RKHRTIVEHGLTLLHTASLPLKFWDESFRTVVYLSNRLPTAVLHHKCPIEVLFKSIPDYS 325

Query: 246 SLKVFGCLCFPNTGAFNTNKLQFRS 320
            LKVFGC CFPN   +NT+KLQ+RS
Sbjct: 326 FLKVFGCSCFPNLRPYNTHKLQYRS 350



 Score = 23.9 bits (50), Expect(2) = 6e-22
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 11  GIHH*ISCPATHKQNRTVKK 70
           GI H +SCP T +QN   ++
Sbjct: 247 GIVHRVSCPHTQQQNGVAER 266


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  105 bits (262), Expect(2) = 8e-22
 Identities = 50/85 (58%), Positives = 60/85 (70%)
 Frame = +3

Query: 66  RKHRTVVEHXXXXXXXXXXPLKF*DEAFRTSVFLSNYLPTAVLNFSSPFQELFHTTPDYS 245
           RKHRT+VEH          PLKF DE+FRT V+LSN LPTA+L+   P + LF + PDYS
Sbjct: 684 RKHRTIVEHGLTLLHTASLPLKFWDESFRTVVYLSNRLPTAILHHKCPIEVLFKSIPDYS 743

Query: 246 SLKVFGCLCFPNTGAFNTNKLQFRS 320
            LKVFGC CFPN   +NT+KLQ+RS
Sbjct: 744 FLKVFGCSCFPNLRPYNTHKLQYRS 768



 Score = 23.9 bits (50), Expect(2) = 8e-22
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 11  GIHH*ISCPATHKQNRTVKK 70
           GI H +SCP T +QN   ++
Sbjct: 665 GIVHRVSCPHTQQQNGVAER 684


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
           gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1447

 Score = 94.7 bits (234), Expect(2) = 9e-20
 Identities = 45/85 (52%), Positives = 58/85 (68%)
 Frame = +3

Query: 66  RKHRTVVEHXXXXXXXXXXPLKF*DEAFRTSVFLSNYLPTAVLNFSSPFQELFHTTPDYS 245
           RKHR +VE           PLKF DEAF+ +V+L N  PT +L F +P + LF+ TPDYS
Sbjct: 618 RKHRHIVEVGLTLLAYSSMPLKFWDEAFQAAVYLINRTPTKLLQFLTPLEHLFNQTPDYS 677

Query: 246 SLKVFGCLCFPNTGAFNTNKLQFRS 320
           SL+VFGC C+P+   +NT+KLQFRS
Sbjct: 678 SLRVFGCACWPHLRPYNTHKLQFRS 702



 Score = 27.7 bits (60), Expect(2) = 9e-20
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 11  GIHH*ISCPATHKQNRTVKK 70
           GI H +SCP TH+QN + ++
Sbjct: 599 GITHHVSCPHTHQQNGSAER 618


>emb|CAN64002.1| hypothetical protein VITISV_023116 [Vitis vinifera]
          Length = 1211

 Score = 97.1 bits (240), Expect(2) = 1e-19
 Identities = 46/84 (54%), Positives = 56/84 (66%)
 Frame = +3

Query: 69  KHRTVVEHXXXXXXXXXXPLKF*DEAFRTSVFLSNYLPTAVLNFSSPFQELFHTTPDYSS 248
           KHRT+VEH          PLKF DE+FR  V+LSN LPT VL+   P + LF + P+YS 
Sbjct: 506 KHRTIVEHGLTLLHTTSLPLKFWDESFRIVVYLSNRLPTVVLHHKCPIEVLFKSIPBYSF 565

Query: 249 LKVFGCLCFPNTGAFNTNKLQFRS 320
           LKVFGC CFPN   +NT+KLQ+ S
Sbjct: 566 LKVFGCSCFPNLRPYNTHKLQYXS 589



 Score = 25.0 bits (53), Expect(2) = 1e-19
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 11  GIHH*ISCPATHKQNRTVK 67
           GI H +SCP T +QN  V+
Sbjct: 486 GIVHRVSCPXTQQQNGVVE 504


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1431

 Score = 91.7 bits (226), Expect(2) = 2e-19
 Identities = 43/85 (50%), Positives = 54/85 (63%)
 Frame = +3

Query: 66  RKHRTVVEHXXXXXXXXXXPLKF*DEAFRTSVFLSNYLPTAVLNFSSPFQELFHTTPDYS 245
           RKHR +VE           PLKF DEAF  + +L N LP+ V+ F +P + LF  TPDY 
Sbjct: 605 RKHRHIVEVGLSLLAHASMPLKFWDEAFLAATYLINRLPSKVIKFDTPLERLFKQTPDYK 664

Query: 246 SLKVFGCLCFPNTGAFNTNKLQFRS 320
           SL+ FGC C+PN   +NT+KLQFRS
Sbjct: 665 SLRTFGCACWPNLRPYNTHKLQFRS 689



 Score = 29.3 bits (64), Expect(2) = 2e-19
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 11  GIHH*ISCPATHKQNRTVKK 70
           GI H +SCP TH+QN  V++
Sbjct: 586 GISHHVSCPHTHQQNGAVER 605


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
           mays]
          Length = 1313

 Score = 94.7 bits (234), Expect(2) = 2e-19
 Identities = 43/85 (50%), Positives = 56/85 (65%)
 Frame = +3

Query: 66  RKHRTVVEHXXXXXXXXXXPLKF*DEAFRTSVFLSNYLPTAVLNFSSPFQELFHTTPDYS 245
           RKHR +VE           PLKF DEAF  + +L N  PT +LN  +PF+ LFH  PDYS
Sbjct: 465 RKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLINRTPTKILNLDTPFERLFHKQPDYS 524

Query: 246 SLKVFGCLCFPNTGAFNTNKLQFRS 320
            L++FGC+C+PN   +N++KLQFRS
Sbjct: 525 VLRIFGCVCWPNLRPYNSHKLQFRS 549



 Score = 26.2 bits (56), Expect(2) = 2e-19
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 11  GIHH*ISCPATHKQNRTVKK 70
           GI H +SCP  H+QN + ++
Sbjct: 446 GISHLVSCPHAHQQNGSAER 465


>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea
           mays]
          Length = 969

 Score = 94.7 bits (234), Expect(2) = 2e-19
 Identities = 43/85 (50%), Positives = 56/85 (65%)
 Frame = +3

Query: 66  RKHRTVVEHXXXXXXXXXXPLKF*DEAFRTSVFLSNYLPTAVLNFSSPFQELFHTTPDYS 245
           RKHR +VE           PLKF DEAF  + +L N  PT +LN  +PF+ LFH  PDYS
Sbjct: 465 RKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLINRTPTKILNLDTPFERLFHKQPDYS 524

Query: 246 SLKVFGCLCFPNTGAFNTNKLQFRS 320
            L++FGC+C+PN   +N++KLQFRS
Sbjct: 525 VLRIFGCVCWPNLRPYNSHKLQFRS 549



 Score = 26.2 bits (56), Expect(2) = 2e-19
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 11  GIHH*ISCPATHKQNRTVKK 70
           GI H +SCP  H+QN + ++
Sbjct: 446 GISHLVSCPHAHQQNGSAER 465


>gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
           sativa Japonica Group]
           gi|14718304|gb|AAK72882.1|AC091123_1 putative gag-pol
           protein [Oryza sativa Japonica Group]
          Length = 1219

 Score = 91.3 bits (225), Expect(2) = 4e-19
 Identities = 43/85 (50%), Positives = 53/85 (62%)
 Frame = +3

Query: 66  RKHRTVVEHXXXXXXXXXXPLKF*DEAFRTSVFLSNYLPTAVLNFSSPFQELFHTTPDYS 245
           RKHR +VE           PLKF DEAF  + +L N LP  V++F +P   LFH  PDY 
Sbjct: 606 RKHRHIVEIGLSLLAHASMPLKFWDEAFLAATYLINRLPRKVIDFDTPLARLFHQQPDYK 665

Query: 246 SLKVFGCLCFPNTGAFNTNKLQFRS 320
           SL+ FGC C+PN   +NT+KLQFRS
Sbjct: 666 SLRTFGCACWPNLRPYNTHKLQFRS 690



 Score = 28.9 bits (63), Expect(2) = 4e-19
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 11  GIHH*ISCPATHKQNRTVKK 70
           GI H +SCP TH+QN  V++
Sbjct: 587 GIAHQVSCPHTHQQNGAVER 606


>gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1177

 Score = 91.3 bits (225), Expect(2) = 4e-19
 Identities = 43/85 (50%), Positives = 53/85 (62%)
 Frame = +3

Query: 66  RKHRTVVEHXXXXXXXXXXPLKF*DEAFRTSVFLSNYLPTAVLNFSSPFQELFHTTPDYS 245
           RKHR +VE           PLKF DEAF  + +L N LP  V++F +P   LFH  PDY 
Sbjct: 495 RKHRHIVEIGLSLLAHASMPLKFWDEAFLAATYLINRLPRKVIDFDTPLARLFHQQPDYK 554

Query: 246 SLKVFGCLCFPNTGAFNTNKLQFRS 320
           SL+ FGC C+PN   +NT+KLQFRS
Sbjct: 555 SLRTFGCACWPNLRPYNTHKLQFRS 579



 Score = 28.9 bits (63), Expect(2) = 4e-19
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 11  GIHH*ISCPATHKQNRTVKK 70
           GI H +SCP TH+QN  V++
Sbjct: 476 GIAHQVSCPHTHQQNGAVER 495


>emb|CAN71138.1| hypothetical protein VITISV_008660 [Vitis vinifera]
          Length = 1138

 Score = 96.7 bits (239), Expect(2) = 4e-19
 Identities = 47/84 (55%), Positives = 57/84 (67%)
 Frame = +3

Query: 69  KHRTVVEHXXXXXXXXXXPLKF*DEAFRTSVFLSNYLPTAVLNFSSPFQELFHTTPDYSS 248
           KHRT+V H          PLKF DE+FRT V+LSN LPTAVL+     + LF + PDYS 
Sbjct: 593 KHRTIVXHGLTLLHIAYLPLKFWDESFRTVVYLSNRLPTAVLHHKCLIEVLFKSIPDYSF 652

Query: 249 LKVFGCLCFPNTGAFNTNKLQFRS 320
           LKVFGC CFPN   +NT+KLQ++S
Sbjct: 653 LKVFGCSCFPNLRPYNTHKLQYKS 676



 Score = 23.5 bits (49), Expect(2) = 4e-19
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 11  GIHH*ISCPATHKQN 55
           GI H +SCP T +QN
Sbjct: 573 GIVHRVSCPHTQQQN 587


>gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1145

 Score = 89.4 bits (220), Expect(2) = 4e-18
 Identities = 41/85 (48%), Positives = 56/85 (65%)
 Frame = +3

Query: 66  RKHRTVVEHXXXXXXXXXXPLKF*DEAFRTSVFLSNYLPTAVLNFSSPFQELFHTTPDYS 245
           RKHR +VE           PLKF DEAF+ + +L N +P+ V+  ++P ++ FH  PDYS
Sbjct: 488 RKHRHIVEVGLSLLSHAHMPLKFWDEAFQAATYLINRVPSRVIQNTTPLEKFFHQKPDYS 547

Query: 246 SLKVFGCLCFPNTGAFNTNKLQFRS 320
           SL+VFGC C+PN   +N +KLQFRS
Sbjct: 548 SLRVFGCACWPNLRPYNKHKLQFRS 572



 Score = 27.3 bits (59), Expect(2) = 4e-18
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 11  GIHH*ISCPATHKQNRTVKK 70
           GI H +SCP TH+QN + ++
Sbjct: 469 GIVHHVSCPHTHQQNGSAER 488


>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score = 89.4 bits (220), Expect(2) = 1e-17
 Identities = 44/87 (50%), Positives = 56/87 (64%)
 Frame = +3

Query: 66  RKHRTVVEHXXXXXXXXXXPLKF*DEAFRTSVFLSNYLPTAVLNFSSPFQELFHTTPDYS 245
           RKHR +VE           PLK+  +AF T+VFL N LPT VL    P++ LF++ P+YS
Sbjct: 479 RKHRHIVELGLTLLAQASLPLKYWPDAFSTAVFLINRLPTEVLKQKCPYEFLFNSKPNYS 538

Query: 246 SLKVFGCLCFPNTGAFNTNKLQFRSLP 326
            LKVFGCLCFP+   +N +KL FRS P
Sbjct: 539 QLKVFGCLCFPHLRPYNKHKLDFRSSP 565



 Score = 26.2 bits (56), Expect(2) = 1e-17
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 2   QSQGIHH*ISCPATHKQNRTVKK 70
           +  GI H +SCP T KQN  +++
Sbjct: 457 EQNGIIHRLSCPHTSKQNGIIER 479


>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1478

 Score = 87.8 bits (216), Expect(2) = 1e-17
 Identities = 41/85 (48%), Positives = 56/85 (65%)
 Frame = +3

Query: 66  RKHRTVVEHXXXXXXXXXXPLKF*DEAFRTSVFLSNYLPTAVLNFSSPFQELFHTTPDYS 245
           RKHR +VE           PLKF DEAF+ + +L N +P+ V++  SP ++LF   PDYS
Sbjct: 645 RKHRHIVEIGLSLLSHASMPLKFWDEAFQAATYLINRVPSRVIHNISPLEKLFKQKPDYS 704

Query: 246 SLKVFGCLCFPNTGAFNTNKLQFRS 320
           SL++FGC C+PN   +N +KLQFRS
Sbjct: 705 SLRIFGCACWPNLRPYNNHKLQFRS 729



 Score = 27.3 bits (59), Expect(2) = 1e-17
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 11  GIHH*ISCPATHKQNRTVKK 70
           GI H +SCP TH+QN + ++
Sbjct: 626 GIVHHVSCPHTHQQNGSAER 645


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1460

 Score = 87.8 bits (216), Expect(2) = 1e-17
 Identities = 41/85 (48%), Positives = 56/85 (65%)
 Frame = +3

Query: 66  RKHRTVVEHXXXXXXXXXXPLKF*DEAFRTSVFLSNYLPTAVLNFSSPFQELFHTTPDYS 245
           RKHR +VE           PLKF DEAF+ + +L N +P+ V++  SP ++LF   PDYS
Sbjct: 612 RKHRHIVEIGLSLLSHASMPLKFWDEAFQVATYLINRVPSRVIHNISPLEKLFKQKPDYS 671

Query: 246 SLKVFGCLCFPNTGAFNTNKLQFRS 320
           SL++FGC C+PN   +N +KLQFRS
Sbjct: 672 SLRIFGCACWPNLRPYNNHKLQFRS 696



 Score = 27.3 bits (59), Expect(2) = 1e-17
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 11  GIHH*ISCPATHKQNRTVKK 70
           GI H +SCP TH+QN + ++
Sbjct: 593 GIVHHVSCPHTHQQNGSAER 612


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1256

 Score = 87.4 bits (215), Expect(2) = 1e-17
 Identities = 40/85 (47%), Positives = 56/85 (65%)
 Frame = +3

Query: 66  RKHRTVVEHXXXXXXXXXXPLKF*DEAFRTSVFLSNYLPTAVLNFSSPFQELFHTTPDYS 245
           RKHR +VE           PLKF DEA+++ V+L N +PT VL +SSP + LF  TPDY 
Sbjct: 447 RKHRHIVEVGLSLLAHASLPLKFWDEAYQSGVYLINRMPTKVLGYSSPLECLFKQTPDYQ 506

Query: 246 SLKVFGCLCFPNTGAFNTNKLQFRS 320
           +L+ FGC C+P+   +N++K+ FRS
Sbjct: 507 ALRTFGCACWPDLRPYNSHKMHFRS 531



 Score = 27.7 bits (60), Expect(2) = 1e-17
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 11  GIHH*ISCPATHKQNRTVKK 70
           GI H +SCP TH+QN + ++
Sbjct: 428 GITHHVSCPHTHQQNGSAER 447


>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
          Length = 1242

 Score = 88.6 bits (218), Expect(2) = 2e-17
 Identities = 44/87 (50%), Positives = 55/87 (63%)
 Frame = +3

Query: 66  RKHRTVVEHXXXXXXXXXXPLKF*DEAFRTSVFLSNYLPTAVLNFSSPFQELFHTTPDYS 245
           RKHR +VE           PLK+  +AF T VFL N LPT VL    P++ LF++ P+YS
Sbjct: 725 RKHRHIVELGLTLLAQASLPLKYWPDAFSTXVFLINRLPTEVLKQKCPYEFLFNSKPNYS 784

Query: 246 SLKVFGCLCFPNTGAFNTNKLQFRSLP 326
            LKVFGCLCFP+   +N +KL FRS P
Sbjct: 785 QLKVFGCLCFPHLRPYNKHKLDFRSSP 811



 Score = 26.2 bits (56), Expect(2) = 2e-17
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 2   QSQGIHH*ISCPATHKQNRTVKK 70
           +  GI H +SCP T KQN  +++
Sbjct: 703 EQNGIIHRLSCPHTSKQNGIIER 725


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score = 86.7 bits (213), Expect(2) = 2e-17
 Identities = 40/85 (47%), Positives = 52/85 (61%)
 Frame = +3

Query: 66  RKHRTVVEHXXXXXXXXXXPLKF*DEAFRTSVFLSNYLPTAVLNFSSPFQELFHTTPDYS 245
           RKHR +VE           PLKF DEAF  + +L N  P+ V+ + +P + LFH  P Y+
Sbjct: 609 RKHRHIVEVGLSLLAHASMPLKFWDEAFIAATYLINRTPSKVIQYETPLEHLFHQKPSYT 668

Query: 246 SLKVFGCLCFPNTGAFNTNKLQFRS 320
           SL+VFGC C+PN   +N  KLQFRS
Sbjct: 669 SLRVFGCACWPNLRPYNARKLQFRS 693



 Score = 28.1 bits (61), Expect(2) = 2e-17
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 11  GIHH*ISCPATHKQNRTVKK 70
           GI H +SCP TH+QN + ++
Sbjct: 590 GISHHVSCPHTHQQNGSAER 609


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|108706314|gb|ABF94109.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1247

 Score = 86.7 bits (213), Expect(2) = 2e-17
 Identities = 40/85 (47%), Positives = 55/85 (64%)
 Frame = +3

Query: 66  RKHRTVVEHXXXXXXXXXXPLKF*DEAFRTSVFLSNYLPTAVLNFSSPFQELFHTTPDYS 245
           RKHR +VE           PLKF DEAF ++V+L N  P+ +L +++P + LF  TPDY+
Sbjct: 416 RKHRHIVEMGLALLAYSSMPLKFWDEAFTSAVYLINRTPSRLLKYATPLERLFKQTPDYN 475

Query: 246 SLKVFGCLCFPNTGAFNTNKLQFRS 320
            L+VFGC C+P+   +N  KLQFRS
Sbjct: 476 LLRVFGCACWPHLRPYNARKLQFRS 500



 Score = 27.7 bits (60), Expect(2) = 2e-17
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 11  GIHH*ISCPATHKQNRTVKK 70
           GI H +SCP TH+QN + ++
Sbjct: 397 GITHHVSCPHTHQQNGSAER 416


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score = 84.0 bits (206), Expect(2) = 1e-16
 Identities = 39/85 (45%), Positives = 55/85 (64%)
 Frame = +3

Query: 66  RKHRTVVEHXXXXXXXXXXPLKF*DEAFRTSVFLSNYLPTAVLNFSSPFQELFHTTPDYS 245
           RKHR ++E           PLKF DEAF  + +L N +P+  +  S+P ++LF+  PDY 
Sbjct: 618 RKHRHIIEVGLSLLSYASMPLKFWDEAFVAATYLINRVPSKTIQNSTPLEKLFNQKPDYL 677

Query: 246 SLKVFGCLCFPNTGAFNTNKLQFRS 320
           SL+VFGC C+P+   +NT+KLQFRS
Sbjct: 678 SLRVFGCACWPHLRPYNTHKLQFRS 702



 Score = 28.1 bits (61), Expect(2) = 1e-16
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 11  GIHH*ISCPATHKQNRTVKK 70
           GI H +SCP TH+QN + ++
Sbjct: 599 GIDHHVSCPHTHQQNGSAER 618