BLASTX nr result
ID: Cocculus23_contig00029002
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00029002
(545 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 52 8e-07
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 56 1e-06
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ... 57 1e-06
dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidop... 57 2e-06
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 49 7e-06
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 45 9e-06
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 50 9e-06
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 52.4 bits (124), Expect(2) = 8e-07
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +2
Query: 8 WDKVVWF----PQASF-TWRPFLKKNPCMQKLKELKIVSADNCVLCWSGAETDKHLFFAC 172
W K VWF P+ SF W + ++ + CV C S ET HLFF C
Sbjct: 778 WHKGVWFAHATPKFSFCAWLAIRNRLSTGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQC 837
Query: 173 PFSFKIWTSTAKLCFQSTVYASWEALDN 256
+S +IWTS AK ++ W A+ N
Sbjct: 838 CYSSEIWTSIAKNVYKDRFSTKWSAVVN 865
Score = 26.2 bits (56), Expect(2) = 8e-07
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 303 YHVWEERNKRRFRNKSRQIEKIV 371
+ +W ERN RR KSR ++
Sbjct: 889 HSIWRERNSRRHGEKSRSASNLI 911
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 55.8 bits (133), Expect(2) = 1e-06
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +2
Query: 8 WDKVVWF----PQASF-TWRPFLKKNPCMQKLKELKIVSADNCVLCWSGAETDKHLFFAC 172
W K VWF P+ SF W K Q+++ + S+ CVLC + ET HLFF+C
Sbjct: 761 WHKGVWFAHETPKHSFCVWLAIWNKLSTGQRMQHWNLQSSVGCVLCNNNLETRDHLFFSC 820
Query: 173 PFSFKIWTSTAKLCFQSTVYASWEAL 250
++ IW + AK Q + W+ +
Sbjct: 821 AYTSGIWEALAKNLLQRSYTTDWQTI 846
Score = 22.3 bits (46), Expect(2) = 1e-06
Identities = 8/36 (22%), Positives = 18/36 (50%)
Frame = +3
Query: 303 YHVWEERNKRRFRNKSRQIEKIVDLICQEEKSKVNI 410
Y +W ERN RR +++ I + ++ +++
Sbjct: 872 YTIWRERNGRRHGETPNPAARLIQWIDKHIRNMLSV 907
>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 637
Score = 56.6 bits (135), Expect(2) = 1e-06
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +2
Query: 2 CNWDKVVWFPQAS-----FTWRPFLKKNPCMQKLKELKIVSADNCVLCWSGAETDKHLFF 166
C W + VWFP ++ TW F + +L + + CV C ET HLFF
Sbjct: 277 CEWYRGVWFPSSTPKYSFVTWLAFHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFF 336
Query: 167 ACPFSFKIWTSTAKLCFQSTVYASWEAL 250
+CP+S +IW + AK +SW +
Sbjct: 337 SCPYSSQIWIALAKGLLNGRNVSSWSLI 364
Score = 21.2 bits (43), Expect(2) = 1e-06
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 303 YHVWEERNKRRFRNKSRQIEKIVDLI 380
+ +W ERN RR + K+ LI
Sbjct: 390 HSLWRERNGRRHGEPAIPASKLTKLI 415
>dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidopsis thaliana]
Length = 278
Score = 56.6 bits (135), Expect(2) = 2e-06
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +2
Query: 2 CNWDKVVWFPQAS-----FTWRPFLKKNPCMQKLKELKIVSADNCVLCWSGAETDKHLFF 166
C W + VWFP ++ TW F + +L + + CV C ET HLFF
Sbjct: 109 CEWYRGVWFPSSTPKYSFVTWLAFHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFF 168
Query: 167 ACPFSFKIWTSTAKLCFQSTVYASWEAL 250
+CP+S +IW + AK +SW +
Sbjct: 169 SCPYSSQIWIALAKGLLNGRNVSSWSLI 196
Score = 21.2 bits (43), Expect(2) = 2e-06
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 303 YHVWEERNKRRFRNKSRQIEKIVDLI 380
+ +W ERN RR + K+ LI
Sbjct: 222 HSLWRERNGRRHGEPAIPASKLTKLI 247
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 48.5 bits (114), Expect(2) = 7e-06
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Frame = +2
Query: 5 NWDKVVWFPQAS-----FTWRPFLKKNPC---MQKLKELKIVSADNCVLCWSGAETDKHL 160
+W K VWF A+ TW + P M K VS NCVLC + ++T +HL
Sbjct: 702 SWHKGVWFRHATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSG-NCVLCTNNSKTLEHL 760
Query: 161 FFACPFSFKIWTSTAKLCFQSTVYASWEAL 250
FF+C ++ +W + AK +++ W L
Sbjct: 761 FFSCSYASTVWAALAKGIWKTRYSTRWSHL 790
Score = 26.9 bits (58), Expect(2) = 7e-06
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 303 YHVWEERNKRRFRNKSRQIEKIVDLICQEEKSKVNI 410
YHVW ERN RR ++ I ++ ++++ I
Sbjct: 816 YHVWRERNGRRHDAAPNTPATVIGWIDKQTRNQITI 851
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 44.7 bits (104), Expect(2) = 9e-06
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Frame = +2
Query: 5 NWDKVVWFPQAS-----FTWRPFLKKNPCMQKLKELKIVSADNCVLCWSGAETDKHLFFA 169
NW K VWFP ++ W + ++K C LC + ET HLFF+
Sbjct: 1353 NWYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQLVTCTLCNNAEETRDHLFFS 1412
Query: 170 CPFSFKIWTSTAKLCFQSTVYASWEAL 250
C ++ +W + + + W L
Sbjct: 1413 CQYTSYVWEALTQRLLSTNYSRDWNRL 1439
Score = 30.4 bits (67), Expect(2) = 9e-06
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 303 YHVWEERNKRRFRNKSRQIEKIVDLICQEEKSKVN 407
YH+W ERN RR S +++ LI + +++++
Sbjct: 1465 YHIWRERNARRHGEISSPTNRLIKLIDKTVRNRIS 1499
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 50.4 bits (119), Expect(2) = 9e-06
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Frame = +2
Query: 8 WDKVVWF----PQASF-TWRPFLKKNPCMQKLKELKIVSADNCVLCWSGAETDKHLFFAC 172
W KV+WF P+ SF +W + P ++ A +C+ C ET HLFF C
Sbjct: 1056 WHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTC 1115
Query: 173 PFSFKIWTSTAKLCFQSTVYASWEAL 250
F+ IW A+ F++ + W+++
Sbjct: 1116 SFTSVIWVDLARGIFKTQYTSHWQSI 1141
Score = 24.6 bits (52), Expect(2) = 9e-06
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 303 YHVWEERNKRRFRNKSRQIEKIVDLICQEEKSKVNISC 416
Y VW ERN RR ++V I ++ +++++ C
Sbjct: 1167 YIVWRERNGRRHGEPPNTASQLVGWIDKQIRNQLSSIC 1204