BLASTX nr result
ID: Cocculus23_contig00028542
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00028542
(539 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007200265.1| hypothetical protein PRUPE_ppa015000mg [Prun... 84 2e-43
emb|CAN80324.1| hypothetical protein VITISV_015014 [Vitis vinifera] 84 2e-40
gb|AAT66771.2| Putative polyprotein, identical [Solanum demissum] 75 3e-40
emb|CAN59997.1| hypothetical protein VITISV_020888 [Vitis vinifera] 83 4e-40
emb|CAN59996.1| hypothetical protein VITISV_020887 [Vitis vinifera] 83 4e-40
gb|AAD22153.1|AF061282_6 polyprotein [Sorghum bicolor] 80 9e-40
ref|XP_007044250.1| DNA/RNA polymerases superfamily protein [The... 83 1e-39
gb|ABA97418.2| retrotransposon protein, putative, Ty3-gypsy subc... 82 3e-39
gb|AAP21433.1| putative polyprotein [Oryza sativa Japonica Group... 84 7e-39
emb|CAH66013.1| OSIGBa0093M15.3 [Oryza sativa Indica Group] 80 7e-39
ref|XP_007049449.1| DNA/RNA polymerases superfamily protein [The... 80 7e-39
emb|CAE03484.2| OSJNBa0065O17.9 [Oryza sativa Japonica Group] 82 9e-39
gb|AAC26240.1| contains similarity to reverse transcriptases (PF... 77 1e-38
ref|XP_007032220.1| Retrotransposon protein, putative [Theobroma... 79 1e-38
emb|CAH67121.1| H0502G05.12 [Oryza sativa Indica Group] 82 2e-38
emb|CAE03019.3| OSJNBa0091D06.9 [Oryza sativa Japonica Group] 82 2e-38
gb|ABG66286.1| retrotransposon protein, putative, Ty3-gypsy subc... 82 2e-38
ref|XP_007014066.1| Uncharacterized protein TCM_038736 [Theobrom... 78 2e-38
emb|CAN77191.1| hypothetical protein VITISV_006389 [Vitis vinifera] 83 2e-38
ref|XP_007050046.1| DNA/RNA polymerases superfamily protein [The... 79 2e-38
>ref|XP_007200265.1| hypothetical protein PRUPE_ppa015000mg [Prunus persica]
gi|462395665|gb|EMJ01464.1| hypothetical protein
PRUPE_ppa015000mg [Prunus persica]
Length = 1493
Score = 83.6 bits (205), Expect(4) = 2e-43
Identities = 37/52 (71%), Positives = 46/52 (88%)
Frame = +1
Query: 382 LYLDHKSLKYFFSQKELNMR*RRWLEFLKDYDFTLEYHLGKANVVTNALSRK 537
++ DHKSLKYFF+Q+ELNMR RRWLE +KDYD T+EY+ G+ANVV +ALSRK
Sbjct: 923 IFTDHKSLKYFFTQRELNMRQRRWLELIKDYDCTIEYYPGRANVVADALSRK 974
Score = 63.2 bits (152), Expect(4) = 2e-43
Identities = 29/58 (50%), Positives = 39/58 (67%)
Frame = +3
Query: 87 PWTKLTQKDVSFVWANDCESAF*EMKKNLTTTPILFLLELDEELVIYTDVSGTKLGCV 260
P T+LT+KD++F W +CE +F E+KK LTT P+L L + VIY+D S LGCV
Sbjct: 816 PLTRLTRKDIAFEWTEECEQSFQELKKRLTTAPVLALPDNAGNFVIYSDASLQGLGCV 873
Score = 55.5 bits (132), Expect(4) = 2e-43
Identities = 29/39 (74%), Positives = 32/39 (82%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 CVIHE-DRVIAYASRQ*KIH*RNYPAHDLELVAVVFALK 370
CV+ + DRVIAYASRQ K H +NYP HDLEL AVVFALK
Sbjct: 872 CVLMQHDRVIAYASRQLKKHEQNYPVHDLELAAVVFALK 910
Score = 40.8 bits (94), Expect(4) = 2e-43
Identities = 19/29 (65%), Positives = 25/29 (86%)
Frame = +1
Query: 1 TTVTEVRNFYVGLAGYYRRIVESFSKLAS 87
T+VTE+R+F +GLAGYYRR VE FS +A+
Sbjct: 788 TSVTEIRSF-LGLAGYYRRFVEGFSSIAA 815
>emb|CAN80324.1| hypothetical protein VITISV_015014 [Vitis vinifera]
Length = 596
Score = 83.6 bits (205), Expect(4) = 2e-40
Identities = 38/52 (73%), Positives = 44/52 (84%)
Frame = +1
Query: 382 LYLDHKSLKYFFSQKELNMR*RRWLEFLKDYDFTLEYHLGKANVVTNALSRK 537
++ DHKSLKY FSQKELNMR RRW+E LKDYD ++YH GKANVV +ALSRK
Sbjct: 227 IFTDHKSLKYLFSQKELNMRQRRWIELLKDYDCIIQYHPGKANVVADALSRK 278
Score = 59.3 bits (142), Expect(4) = 2e-40
Identities = 29/64 (45%), Positives = 39/64 (60%)
Frame = +3
Query: 69 FLQAS*PWTKLTQKDVSFVWANDCESAF*EMKKNLTTTPILFLLELDEELVIYTDVSGTK 248
F + + P TKLTQK V F W++DCE +F E+K L + PIL + V+Y+D S
Sbjct: 114 FYKIALPLTKLTQKGVKFEWSDDCECSFQELKNKLVSAPILTIPSGSGGFVVYSDASHQG 173
Query: 249 LGCV 260
LGCV
Sbjct: 174 LGCV 177
Score = 50.4 bits (119), Expect(4) = 2e-40
Identities = 26/39 (66%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 CVIHED-RVIAYASRQ*KIH*RNYPAHDLELVAVVFALK 370
CV+ + RV+AYASRQ K + +NYP HDLEL AVVFALK
Sbjct: 176 CVLMQHGRVVAYASRQLKPYEKNYPTHDLELAAVVFALK 214
Score = 39.7 bits (91), Expect(4) = 2e-40
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = +1
Query: 1 TTVTEVRNFYVGLAGYYRRIVESFSKLA 84
+TVTE+R+F +GLAGYYRR +E F K+A
Sbjct: 92 STVTEIRSF-LGLAGYYRRFIEGFYKIA 118
>gb|AAT66771.2| Putative polyprotein, identical [Solanum demissum]
Length = 1771
Score = 75.1 bits (183), Expect(4) = 3e-40
Identities = 33/52 (63%), Positives = 42/52 (80%)
Frame = +1
Query: 382 LYLDHKSLKYFFSQKELNMR*RRWLEFLKDYDFTLEYHLGKANVVTNALSRK 537
+Y DH+SL+Y SQ++LN R RRW+E LKDYD ++ YH GKANVV +ALSRK
Sbjct: 1192 IYTDHRSLQYIMSQRDLNSRQRRWIELLKDYDLSILYHPGKANVVADALSRK 1243
Score = 59.3 bits (142), Expect(4) = 3e-40
Identities = 28/56 (50%), Positives = 37/56 (66%)
Frame = +3
Query: 93 TKLTQKDVSFVWANDCESAF*EMKKNLTTTPILFLLELDEELVIYTDVSGTKLGCV 260
T+LT+ DV FVW+ +CE++F +K+ LTT PIL L E +Y D SG LGCV
Sbjct: 1087 TRLTRVDVPFVWSEECEASFLRLKELLTTAPILTLPVEGEGFTVYCDASGVGLGCV 1142
Score = 55.8 bits (133), Expect(4) = 3e-40
Identities = 29/39 (74%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 CVI-HEDRVIAYASRQ*KIH*RNYPAHDLELVAVVFALK 370
CV+ + RVIAYASRQ KIH NYP HDLEL AVVFALK
Sbjct: 1141 CVLMQQGRVIAYASRQLKIHEHNYPTHDLELAAVVFALK 1179
Score = 41.6 bits (96), Expect(4) = 3e-40
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +1
Query: 1 TTVTEVRNFYVGLAGYYRRIVESFSKLAS 87
T+VTE+R+F VGLAGYYRR VE FS +A+
Sbjct: 1057 TSVTEIRSF-VGLAGYYRRFVEGFSTIAA 1084
>emb|CAN59997.1| hypothetical protein VITISV_020888 [Vitis vinifera]
Length = 893
Score = 82.8 bits (203), Expect(4) = 4e-40
Identities = 38/56 (67%), Positives = 45/56 (80%)
Frame = +1
Query: 370 KKITLYLDHKSLKYFFSQKELNMR*RRWLEFLKDYDFTLEYHLGKANVVTNALSRK 537
+K +Y DHKSLKY F+QK+LN R RRW+E L+DYDF L YH GKANVV +ALSRK
Sbjct: 349 EKFEVYSDHKSLKYIFTQKDLNSRQRRWMETLEDYDFALHYHPGKANVVADALSRK 404
Score = 61.2 bits (147), Expect(4) = 4e-40
Identities = 31/64 (48%), Positives = 40/64 (62%)
Frame = +3
Query: 69 FLQAS*PWTKLTQKDVSFVWANDCESAF*EMKKNLTTTPILFLLELDEELVIYTDVSGTK 248
F + + P T+LT+K V F W +CE+AF E+K+ LTTTP+L E IY DVS
Sbjct: 240 FSRIAAPMTRLTRKGVKFDWNEECENAFQELKRKLTTTPVLTAPISGELFTIYCDVSTVG 299
Query: 249 LGCV 260
LGCV
Sbjct: 300 LGCV 303
Score = 49.7 bits (117), Expect(4) = 4e-40
Identities = 26/39 (66%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 CVI-HEDRVIAYASRQ*KIH*RNYPAHDLELVAVVFALK 370
CV+ + +V+AYASRQ K H RNY HDLEL AVVFALK
Sbjct: 302 CVLMQQGKVVAYASRQLKQHERNYLTHDLELAAVVFALK 340
Score = 37.7 bits (86), Expect(4) = 4e-40
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +1
Query: 1 TTVTEVRNFYVGLAGYYRRIVESFSKLAS 87
T V EVR+F +GL GYYRR VE+FS++A+
Sbjct: 218 TNVFEVRSF-LGLVGYYRRFVENFSRIAA 245
>emb|CAN59996.1| hypothetical protein VITISV_020887 [Vitis vinifera]
Length = 701
Score = 82.8 bits (203), Expect(4) = 4e-40
Identities = 38/56 (67%), Positives = 45/56 (80%)
Frame = +1
Query: 370 KKITLYLDHKSLKYFFSQKELNMR*RRWLEFLKDYDFTLEYHLGKANVVTNALSRK 537
+K +Y DHKSLKY F+QK+LN R RRW+E L+DYDF L YH GKANVV +ALSRK
Sbjct: 537 EKFEVYSDHKSLKYIFTQKDLNSRQRRWMETLEDYDFALHYHPGKANVVADALSRK 592
Score = 61.2 bits (147), Expect(4) = 4e-40
Identities = 31/64 (48%), Positives = 40/64 (62%)
Frame = +3
Query: 69 FLQAS*PWTKLTQKDVSFVWANDCESAF*EMKKNLTTTPILFLLELDEELVIYTDVSGTK 248
F + + P T+LT+K V F W +CE+AF E+K+ LTTTP+L E IY DVS
Sbjct: 428 FSRIAAPMTRLTRKGVKFDWNEECENAFQELKRKLTTTPVLTAPISGELFTIYCDVSTVG 487
Query: 249 LGCV 260
LGCV
Sbjct: 488 LGCV 491
Score = 49.7 bits (117), Expect(4) = 4e-40
Identities = 26/39 (66%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 CVI-HEDRVIAYASRQ*KIH*RNYPAHDLELVAVVFALK 370
CV+ + +V+AYASRQ K H RNY HDLEL AVVFALK
Sbjct: 490 CVLMQQGKVVAYASRQLKQHERNYLTHDLELAAVVFALK 528
Score = 37.7 bits (86), Expect(4) = 4e-40
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +1
Query: 1 TTVTEVRNFYVGLAGYYRRIVESFSKLAS 87
T V EVR+F +GL GYYRR VE+FS++A+
Sbjct: 406 TNVFEVRSF-LGLVGYYRRFVENFSRIAA 433
>gb|AAD22153.1|AF061282_6 polyprotein [Sorghum bicolor]
Length = 1484
Score = 80.1 bits (196), Expect(4) = 9e-40
Identities = 37/58 (63%), Positives = 44/58 (75%)
Frame = +1
Query: 364 IKKKITLYLDHKSLKYFFSQKELNMR*RRWLEFLKDYDFTLEYHLGKANVVTNALSRK 537
I K +Y DHKSLKY F+Q +LN+R RRWLE +KDYD + YH GKANVV +ALSRK
Sbjct: 914 IGHKSDIYTDHKSLKYIFTQTDLNLRQRRWLELIKDYDLEVHYHPGKANVVADALSRK 971
Score = 60.5 bits (145), Expect(4) = 9e-40
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +3
Query: 69 FLQAS*PWTKLTQKDVSFVWANDCESAF*EMKKNLTTTPILFLLELDEELVIYTDVSGTK 248
F + + P T L +K+ FVW++ C+++F E KK LTT P+L L +L + IY D S
Sbjct: 807 FSKLAKPMTALLEKNAKFVWSDKCQASFEEFKKRLTTAPVLVLPDLSKSFSIYCDASRLG 866
Query: 249 LGCV 260
LGCV
Sbjct: 867 LGCV 870
Score = 49.3 bits (116), Expect(4) = 9e-40
Identities = 26/39 (66%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 CVI-HEDRVIAYASRQ*KIH*RNYPAHDLELVAVVFALK 370
CV+ E RV+AYASRQ + H NYP HDLEL AVV ALK
Sbjct: 869 CVLMQEGRVVAYASRQLRKHELNYPTHDLELAAVVHALK 907
Score = 40.4 bits (93), Expect(4) = 9e-40
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = +1
Query: 1 TTVTEVRNFYVGLAGYYRRIVESFSKLA 84
T V+E+R+F +GLAGYYRR +E FSKLA
Sbjct: 785 TDVSEIRSF-LGLAGYYRRFIEGFSKLA 811
>ref|XP_007044250.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508708185|gb|EOY00082.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 1515
Score = 82.8 bits (203), Expect(4) = 1e-39
Identities = 36/52 (69%), Positives = 44/52 (84%)
Frame = +1
Query: 382 LYLDHKSLKYFFSQKELNMR*RRWLEFLKDYDFTLEYHLGKANVVTNALSRK 537
++ DHKSLKY +QKELN+R RRWLE +KDYD ++YHLGKANVV +ALSRK
Sbjct: 937 IFTDHKSLKYLLTQKELNLRQRRWLELIKDYDLVIDYHLGKANVVADALSRK 988
Score = 55.8 bits (133), Expect(4) = 1e-39
Identities = 26/58 (44%), Positives = 37/58 (63%)
Frame = +3
Query: 87 PWTKLTQKDVSFVWANDCESAF*EMKKNLTTTPILFLLELDEELVIYTDVSGTKLGCV 260
P T+LT+K V FVW + CE+ F E+K LT+ P+L L + ++Y+D S LGCV
Sbjct: 830 PLTRLTRKGVKFVWDDVCENRFQELKNRLTSAPVLTLPVNGKGFIVYSDASKLGLGCV 887
Score = 53.1 bits (126), Expect(4) = 1e-39
Identities = 27/39 (69%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 CVIHED-RVIAYASRQ*KIH*RNYPAHDLELVAVVFALK 370
CV+ +D +V+AYASRQ K H NYP HDLEL AVVFALK
Sbjct: 886 CVLMQDEKVVAYASRQLKRHEANYPTHDLELAAVVFALK 924
Score = 38.1 bits (87), Expect(4) = 1e-39
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = +1
Query: 4 TVTEVRNFYVGLAGYYRRIVESFSKLAS 87
TVTE+R+F +GLAGYYRR V+ FS +A+
Sbjct: 803 TVTEIRSF-LGLAGYYRRFVQGFSLVAA 829
>gb|ABA97418.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1807
Score = 81.6 bits (200), Expect(4) = 3e-39
Identities = 38/58 (65%), Positives = 44/58 (75%)
Frame = +1
Query: 364 IKKKITLYLDHKSLKYFFSQKELNMR*RRWLEFLKDYDFTLEYHLGKANVVTNALSRK 537
I + +Y DHKSLKY F+Q ELNMR RRWLE +KDYD + YH GKANVV +ALSRK
Sbjct: 1235 IGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRK 1292
Score = 58.9 bits (141), Expect(4) = 3e-39
Identities = 27/64 (42%), Positives = 41/64 (64%)
Frame = +3
Query: 69 FLQAS*PWTKLTQKDVSFVWANDCESAF*EMKKNLTTTPILFLLELDEELVIYTDVSGTK 248
F + + P T+L +K+ F W+ CE +F E+KK LTT P+L LL++ ++ I+ D S
Sbjct: 1128 FSKLARPMTELLKKEKKFQWSAACEDSFQELKKRLTTAPVLTLLDIQKDFEIFCDASRQG 1187
Query: 249 LGCV 260
LGCV
Sbjct: 1188 LGCV 1191
Score = 48.9 bits (115), Expect(4) = 3e-39
Identities = 25/39 (64%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 CVI-HEDRVIAYASRQ*KIH*RNYPAHDLELVAVVFALK 370
CV+ E +V+AYASRQ + H NYP HDLEL AVV ALK
Sbjct: 1190 CVLMQEQKVVAYASRQLRPHEANYPTHDLELAAVVHALK 1228
Score = 38.9 bits (89), Expect(4) = 3e-39
Identities = 18/26 (69%), Positives = 23/26 (88%)
Frame = +1
Query: 7 VTEVRNFYVGLAGYYRRIVESFSKLA 84
V+E+R+F +GLAGYYRR +E FSKLA
Sbjct: 1108 VSEIRSF-LGLAGYYRRFIEGFSKLA 1132
>gb|AAP21433.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108711644|gb|ABF99439.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1382
Score = 83.6 bits (205), Expect(4) = 7e-39
Identities = 39/58 (67%), Positives = 45/58 (77%)
Frame = +1
Query: 364 IKKKITLYLDHKSLKYFFSQKELNMR*RRWLEFLKDYDFTLEYHLGKANVVTNALSRK 537
I K+ +Y DHKSLKY F+Q ELNMR RRWLE +KDYD + YH GKANVV +ALSRK
Sbjct: 836 IGKRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRK 893
Score = 57.0 bits (136), Expect(4) = 7e-39
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = +3
Query: 69 FLQAS*PWTKLTQKDVSFVWANDCESAF*EMKKNLTTTPILFLLELDEELVIYTDVSGTK 248
F + + P T+L +K+ F W+ CE +F EMKK LTT P+L L ++ ++ I+ D S
Sbjct: 729 FSKLARPMTELLKKERKFQWSAACEDSFQEMKKRLTTAPVLTLPDIQKDFEIFCDASRQG 788
Query: 249 LGCV 260
LGCV
Sbjct: 789 LGCV 792
Score = 47.8 bits (112), Expect(4) = 7e-39
Identities = 24/39 (61%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 CVIHEDR-VIAYASRQ*KIH*RNYPAHDLELVAVVFALK 370
CV+ ++R V+AYASRQ + H NYP HDLEL AV+ ALK
Sbjct: 791 CVLMQERKVVAYASRQLRPHEVNYPTHDLELAAVIHALK 829
Score = 38.9 bits (89), Expect(4) = 7e-39
Identities = 18/26 (69%), Positives = 23/26 (88%)
Frame = +1
Query: 7 VTEVRNFYVGLAGYYRRIVESFSKLA 84
V+E+R+F +GLAGYYRR +E FSKLA
Sbjct: 709 VSEIRSF-LGLAGYYRRFIEGFSKLA 733
>emb|CAH66013.1| OSIGBa0093M15.3 [Oryza sativa Indica Group]
Length = 1317
Score = 80.5 bits (197), Expect(4) = 7e-39
Identities = 36/52 (69%), Positives = 42/52 (80%)
Frame = +1
Query: 382 LYLDHKSLKYFFSQKELNMR*RRWLEFLKDYDFTLEYHLGKANVVTNALSRK 537
+Y DHKSLKY F+Q +LNMR RRWLE +KDYD + YH GKANVV +ALSRK
Sbjct: 904 IYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMKIHYHPGKANVVADALSRK 955
Score = 58.5 bits (140), Expect(4) = 7e-39
Identities = 27/64 (42%), Positives = 38/64 (59%)
Frame = +3
Query: 69 FLQAS*PWTKLTQKDVSFVWANDCESAF*EMKKNLTTTPILFLLELDEELVIYTDVSGTK 248
F + + P T+L QK+V + W DCE +F E+KK L T P+L L + + +Y D S
Sbjct: 791 FSKIARPMTRLLQKEVKYKWTEDCEQSFQELKKRLVTAPVLILPDSRKGFQVYCDASRHG 850
Query: 249 LGCV 260
LGCV
Sbjct: 851 LGCV 854
Score = 49.3 bits (116), Expect(4) = 7e-39
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = +2
Query: 239 RNKIRLCVIHEDRVIAYASRQ*KIH*RNYPAHDLELVAVVFALK 370
R+ + ++ E +V+AYASRQ + H NYP HDLEL AVV ALK
Sbjct: 848 RHGLGCVLMQEGKVVAYASRQLRPHENNYPTHDLELAAVVHALK 891
Score = 38.9 bits (89), Expect(4) = 7e-39
Identities = 17/27 (62%), Positives = 24/27 (88%)
Frame = +1
Query: 4 TVTEVRNFYVGLAGYYRRIVESFSKLA 84
TV+E+R+F +GL GYYRR +E+FSK+A
Sbjct: 770 TVSEIRSF-LGLVGYYRRFIENFSKIA 795
>ref|XP_007049449.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508701710|gb|EOX93606.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 920
Score = 80.1 bits (196), Expect(4) = 7e-39
Identities = 35/56 (62%), Positives = 45/56 (80%)
Frame = +1
Query: 370 KKITLYLDHKSLKYFFSQKELNMR*RRWLEFLKDYDFTLEYHLGKANVVTNALSRK 537
++ ++ DHKSLKY +QKELN+R RRWLE +KDYD ++YH GKANVV +ALSRK
Sbjct: 692 ERCRIFSDHKSLKYLLTQKELNLRQRRWLELIKDYDLVIDYHPGKANVVADALSRK 747
Score = 57.4 bits (137), Expect(4) = 7e-39
Identities = 28/58 (48%), Positives = 37/58 (63%)
Frame = +3
Query: 87 PWTKLTQKDVSFVWANDCESAF*EMKKNLTTTPILFLLELDEELVIYTDVSGTKLGCV 260
P T+LT+K V F W + CE+ F E+K LT+ PIL L +E V+Y+D S LGCV
Sbjct: 589 PLTRLTRKGVKFEWDDVCENRFQELKNRLTSAPILTLPVSGKEFVVYSDTSKLGLGCV 646
Score = 53.5 bits (127), Expect(4) = 7e-39
Identities = 28/39 (71%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 CVIHED-RVIAYASRQ*KIH*RNYPAHDLELVAVVFALK 370
CV+ +D +VIAYASRQ K H NYP HDLEL AVVFALK
Sbjct: 645 CVLMQDEKVIAYASRQLKKHETNYPTHDLELAAVVFALK 683
Score = 36.2 bits (82), Expect(4) = 7e-39
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +1
Query: 4 TVTEVRNFYVGLAGYYRRIVESFSKLAS 87
TVTE+R+F +GLAGYYRR V+ F +A+
Sbjct: 562 TVTEIRSF-LGLAGYYRRFVQGFFLIAA 588
>emb|CAE03484.2| OSJNBa0065O17.9 [Oryza sativa Japonica Group]
Length = 1851
Score = 81.6 bits (200), Expect(4) = 9e-39
Identities = 38/58 (65%), Positives = 44/58 (75%)
Frame = +1
Query: 364 IKKKITLYLDHKSLKYFFSQKELNMR*RRWLEFLKDYDFTLEYHLGKANVVTNALSRK 537
I + +Y DHKSLKY F+Q ELNMR RRWLE +KDYD + YH GKANVV +ALSRK
Sbjct: 1279 IGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRK 1336
Score = 56.2 bits (134), Expect(4) = 9e-39
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = +3
Query: 69 FLQAS*PWTKLTQKDVSFVWANDCESAF*EMKKNLTTTPILFLLELDEELVIYTDVSGTK 248
F + + P T+L +K+ F W+ CE +F EMKK LTT P+L L ++ ++ I+ D S
Sbjct: 1172 FSKLARPMTELLKKEKKFQWSVACEDSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQG 1231
Query: 249 LGCV 260
LGCV
Sbjct: 1232 LGCV 1235
Score = 48.1 bits (113), Expect(4) = 9e-39
Identities = 25/39 (64%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 CVIHEDR-VIAYASRQ*KIH*RNYPAHDLELVAVVFALK 370
CV+ ++R V+AYASRQ + H NYP HDLEL AVV ALK
Sbjct: 1234 CVLMQERKVVAYASRQLRPHEVNYPTHDLELAAVVHALK 1272
Score = 40.8 bits (94), Expect(4) = 9e-39
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = +1
Query: 1 TTVTEVRNFYVGLAGYYRRIVESFSKLA 84
T V+E+R+F +GLAGYYRR +E FSKLA
Sbjct: 1150 TNVSEIRSF-LGLAGYYRRFIEGFSKLA 1176
>gb|AAC26240.1| contains similarity to reverse transcriptases (PFam: rvt.hmm, score:
116.22) [Arabidopsis thaliana]
Length = 1322
Score = 77.0 bits (188), Expect(4) = 1e-38
Identities = 33/55 (60%), Positives = 43/55 (78%)
Frame = +1
Query: 373 KITLYLDHKSLKYFFSQKELNMR*RRWLEFLKDYDFTLEYHLGKANVVTNALSRK 537
K+ ++ DHKSLKY F+Q ELN+R RRW+E + DYD + YH GKANV+ +ALSRK
Sbjct: 880 KVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYHPGKANVIVDALSRK 934
Score = 67.8 bits (164), Expect(4) = 1e-38
Identities = 33/64 (51%), Positives = 41/64 (64%)
Frame = +3
Query: 69 FLQAS*PWTKLTQKDVSFVWANDCESAF*EMKKNLTTTPILFLLELDEELVIYTDVSGTK 248
F + P TKLT KDV FVW+ +CE F +K+ LT+TP+L L E E +YTD SG
Sbjct: 770 FASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGEPYSVYTDASGVG 829
Query: 249 LGCV 260
LGCV
Sbjct: 830 LGCV 833
Score = 48.1 bits (113), Expect(4) = 1e-38
Identities = 24/39 (61%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 CVIHE-DRVIAYASRQ*KIH*RNYPAHDLELVAVVFALK 370
CV+ + +VIAYASRQ + H NYP HDLE+ AV+FALK
Sbjct: 832 CVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVIFALK 870
Score = 33.9 bits (76), Expect(4) = 1e-38
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1
Query: 1 TTVTEVRNFYVGLAGYYRRIVESFSKLA 84
T E+R+F +GLAGYYRR V+ F+ +A
Sbjct: 748 TNAVEIRSF-LGLAGYYRRFVKGFASMA 774
>ref|XP_007032220.1| Retrotransposon protein, putative [Theobroma cacao]
gi|508711249|gb|EOY03146.1| Retrotransposon protein,
putative [Theobroma cacao]
Length = 1480
Score = 78.6 bits (192), Expect(4) = 1e-38
Identities = 35/52 (67%), Positives = 42/52 (80%)
Frame = +1
Query: 382 LYLDHKSLKYFFSQKELNMR*RRWLEFLKDYDFTLEYHLGKANVVTNALSRK 537
+Y DHKSLKY F Q++LN+R RW+E LKDYD T+ YH GKANVV +ALSRK
Sbjct: 1003 IYTDHKSLKYIFQQRDLNLRQHRWMELLKDYDCTILYHPGKANVVADALSRK 1054
Score = 57.0 bits (136), Expect(4) = 1e-38
Identities = 26/56 (46%), Positives = 37/56 (66%)
Frame = +3
Query: 93 TKLTQKDVSFVWANDCESAF*EMKKNLTTTPILFLLELDEELVIYTDVSGTKLGCV 260
TKLT+KD F W++ CE++F ++K LTT P+L LL+ ++ D SG LGCV
Sbjct: 898 TKLTRKDTKFEWSDACENSFEKLKACLTTAPVLSLLQGTGGYTVFCDASGVGLGCV 953
Score = 50.1 bits (118), Expect(4) = 1e-38
Identities = 25/39 (64%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 CVIHED-RVIAYASRQ*KIH*RNYPAHDLELVAVVFALK 370
CV+ + +VIAYASRQ K H +NYP HDLE+ A+VFALK
Sbjct: 952 CVLMQHGKVIAYASRQLKRHEQNYPIHDLEMAAIVFALK 990
Score = 40.8 bits (94), Expect(4) = 1e-38
Identities = 19/29 (65%), Positives = 25/29 (86%)
Frame = +1
Query: 1 TTVTEVRNFYVGLAGYYRRIVESFSKLAS 87
T+VTE+R+F VGLAGYYRR V+ FSK+ +
Sbjct: 868 TSVTEIRSF-VGLAGYYRRFVKDFSKIVA 895
>emb|CAH67121.1| H0502G05.12 [Oryza sativa Indica Group]
Length = 1877
Score = 81.6 bits (200), Expect(4) = 2e-38
Identities = 38/58 (65%), Positives = 44/58 (75%)
Frame = +1
Query: 364 IKKKITLYLDHKSLKYFFSQKELNMR*RRWLEFLKDYDFTLEYHLGKANVVTNALSRK 537
I + +Y DHKSLKY F+Q ELNMR RRWLE +KDYD + YH GKANVV +ALSRK
Sbjct: 1305 IGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRK 1362
Score = 56.6 bits (135), Expect(4) = 2e-38
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = +3
Query: 69 FLQAS*PWTKLTQKDVSFVWANDCESAF*EMKKNLTTTPILFLLELDEELVIYTDVSGTK 248
F + + P T+L +K+ F W+ CE +F EMKK LTT P+L L ++ ++ I+ D S
Sbjct: 1198 FSKLARPMTELLKKEKKFQWSAACEDSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQG 1257
Query: 249 LGCV 260
LGCV
Sbjct: 1258 LGCV 1261
Score = 48.9 bits (115), Expect(4) = 2e-38
Identities = 25/39 (64%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 CVIHEDR-VIAYASRQ*KIH*RNYPAHDLELVAVVFALK 370
CV+ ++R V+AYASRQ + H NYP HDLEL AVV ALK
Sbjct: 1260 CVLMQERKVVAYASRQLRPHEANYPTHDLELAAVVHALK 1298
Score = 38.9 bits (89), Expect(4) = 2e-38
Identities = 18/26 (69%), Positives = 23/26 (88%)
Frame = +1
Query: 7 VTEVRNFYVGLAGYYRRIVESFSKLA 84
V+E+R+F +GLAGYYRR +E FSKLA
Sbjct: 1178 VSEIRSF-LGLAGYYRRFIEGFSKLA 1202
>emb|CAE03019.3| OSJNBa0091D06.9 [Oryza sativa Japonica Group]
Length = 1762
Score = 81.6 bits (200), Expect(4) = 2e-38
Identities = 38/58 (65%), Positives = 44/58 (75%)
Frame = +1
Query: 364 IKKKITLYLDHKSLKYFFSQKELNMR*RRWLEFLKDYDFTLEYHLGKANVVTNALSRK 537
I + +Y DHKSLKY F+Q ELNMR RRWLE +KDYD + YH GKANVV +ALSRK
Sbjct: 1190 IGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRK 1247
Score = 56.6 bits (135), Expect(4) = 2e-38
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = +3
Query: 69 FLQAS*PWTKLTQKDVSFVWANDCESAF*EMKKNLTTTPILFLLELDEELVIYTDVSGTK 248
F + + P T+L +K+ F W+ CE +F EMKK LTT P+L L ++ ++ I+ D S
Sbjct: 1083 FSKLARPMTELLKKEKKFQWSAACEDSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQG 1142
Query: 249 LGCV 260
LGCV
Sbjct: 1143 LGCV 1146
Score = 48.9 bits (115), Expect(4) = 2e-38
Identities = 25/39 (64%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 CVIHEDR-VIAYASRQ*KIH*RNYPAHDLELVAVVFALK 370
CV+ ++R V+AYASRQ + H NYP HDLEL AVV ALK
Sbjct: 1145 CVLMQERKVVAYASRQLRPHEANYPTHDLELAAVVHALK 1183
Score = 38.9 bits (89), Expect(4) = 2e-38
Identities = 18/26 (69%), Positives = 23/26 (88%)
Frame = +1
Query: 7 VTEVRNFYVGLAGYYRRIVESFSKLA 84
V+E+R+F +GLAGYYRR +E FSKLA
Sbjct: 1063 VSEIRSF-LGLAGYYRRFIEGFSKLA 1087
>gb|ABG66286.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1759
Score = 81.6 bits (200), Expect(4) = 2e-38
Identities = 38/58 (65%), Positives = 44/58 (75%)
Frame = +1
Query: 364 IKKKITLYLDHKSLKYFFSQKELNMR*RRWLEFLKDYDFTLEYHLGKANVVTNALSRK 537
I + +Y DHKSLKY F+Q ELNMR RRWLE +KDYD + YH GKANVV +ALSRK
Sbjct: 1187 IGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRK 1244
Score = 57.4 bits (137), Expect(4) = 2e-38
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = +3
Query: 69 FLQAS*PWTKLTQKDVSFVWANDCESAF*EMKKNLTTTPILFLLELDEELVIYTDVSGTK 248
F + + P T+L +K+ F W+ CE +F EMKK LTT P+L L ++ ++ I+ D S
Sbjct: 1080 FSKLARPMTELLKKEKKFQWSTACEDSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQG 1139
Query: 249 LGCV 260
LGCV
Sbjct: 1140 LGCV 1143
Score = 48.1 bits (113), Expect(4) = 2e-38
Identities = 25/39 (64%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 CVIHEDR-VIAYASRQ*KIH*RNYPAHDLELVAVVFALK 370
CV+ ++R V+AYASRQ + H NYP HDLEL AVV ALK
Sbjct: 1142 CVLMQERKVVAYASRQLRPHEVNYPTHDLELAAVVHALK 1180
Score = 38.9 bits (89), Expect(4) = 2e-38
Identities = 18/26 (69%), Positives = 23/26 (88%)
Frame = +1
Query: 7 VTEVRNFYVGLAGYYRRIVESFSKLA 84
V+E+R+F +GLAGYYRR +E FSKLA
Sbjct: 1060 VSEIRSF-LGLAGYYRRFIEGFSKLA 1084
>ref|XP_007014066.1| Uncharacterized protein TCM_038736 [Theobroma cacao]
gi|508784429|gb|EOY31685.1| Uncharacterized protein
TCM_038736 [Theobroma cacao]
Length = 1486
Score = 78.2 bits (191), Expect(4) = 2e-38
Identities = 34/56 (60%), Positives = 44/56 (78%)
Frame = +1
Query: 370 KKITLYLDHKSLKYFFSQKELNMR*RRWLEFLKDYDFTLEYHLGKANVVTNALSRK 537
++ ++ DHKSLKY + KELN+R RRWLE +KDYD ++YH GKANVV +ALSRK
Sbjct: 947 ERCRIFSDHKSLKYLLTHKELNLRQRRWLELIKDYDLVIDYHPGKANVVADALSRK 1002
Score = 55.8 bits (133), Expect(4) = 2e-38
Identities = 26/58 (44%), Positives = 37/58 (63%)
Frame = +3
Query: 87 PWTKLTQKDVSFVWANDCESAF*EMKKNLTTTPILFLLELDEELVIYTDVSGTKLGCV 260
P T+LT+K V + W + CE+ F E+K LT+ P+L L +E V+Y+D S LGCV
Sbjct: 844 PLTRLTRKGVKYEWDDVCENRFQELKNRLTSAPVLTLPVSGKEFVVYSDASKLGLGCV 901
Score = 53.5 bits (127), Expect(4) = 2e-38
Identities = 28/39 (71%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 CVIHED-RVIAYASRQ*KIH*RNYPAHDLELVAVVFALK 370
CV+ +D +VIAYASRQ K H NYP HDLEL AVVFALK
Sbjct: 900 CVLMQDEKVIAYASRQLKKHETNYPTHDLELAAVVFALK 938
Score = 38.5 bits (88), Expect(4) = 2e-38
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = +1
Query: 4 TVTEVRNFYVGLAGYYRRIVESFSKLAS 87
TVTE+R+F +GLAGYYRR V+ FS +A+
Sbjct: 817 TVTEIRSF-LGLAGYYRRFVQGFSLIAA 843
>emb|CAN77191.1| hypothetical protein VITISV_006389 [Vitis vinifera]
Length = 1387
Score = 82.8 bits (203), Expect(4) = 2e-38
Identities = 38/56 (67%), Positives = 45/56 (80%)
Frame = +1
Query: 370 KKITLYLDHKSLKYFFSQKELNMR*RRWLEFLKDYDFTLEYHLGKANVVTNALSRK 537
+K +Y DHKSLKY F+QK+LN R RRW+E L+DYDF L YH GKANVV +ALSRK
Sbjct: 822 EKFEVYSDHKSLKYIFTQKDLNSRQRRWMETLEDYDFALHYHPGKANVVADALSRK 877
Score = 54.7 bits (130), Expect(4) = 2e-38
Identities = 27/39 (69%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 CVI-HEDRVIAYASRQ*KIH*RNYPAHDLELVAVVFALK 370
CV+ +D+V+AYASRQ K H RNYP HDLEL VVFALK
Sbjct: 775 CVLMQQDKVVAYASRQLKQHERNYPTHDLELAVVVFALK 813
Score = 51.2 bits (121), Expect(4) = 2e-38
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +3
Query: 66 EFLQAS*PWTKLTQKDVSFVWANDCESAF*EMKKNLTTTPILFLLELDEELVIYTDVSGT 245
+F + + P T+LT+K V F +CE+AF E+K+ LT P+L E IY D S
Sbjct: 712 DFSRIAAPMTRLTRKGVKFDLNEECENAFQELKRKLTIAPVLTAPISGELFTIYCDASTV 771
Query: 246 KLGCV 260
LGCV
Sbjct: 772 GLGCV 776
Score = 37.4 bits (85), Expect(4) = 2e-38
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +1
Query: 1 TTVTEVRNFYVGLAGYYRRIVESFSKLAS 87
T V EVR+F +GL GYYRR VE FS++A+
Sbjct: 691 TNVFEVRSF-LGLVGYYRRFVEDFSRIAA 718
>ref|XP_007050046.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508702307|gb|EOX94203.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 1336
Score = 79.3 bits (194), Expect(4) = 2e-38
Identities = 34/52 (65%), Positives = 43/52 (82%)
Frame = +1
Query: 382 LYLDHKSLKYFFSQKELNMR*RRWLEFLKDYDFTLEYHLGKANVVTNALSRK 537
++ DHKSLKY +QKE+N+R RRWLE +KDYD ++YH GKANVV +ALSRK
Sbjct: 900 IFTDHKSLKYLLTQKEINLRQRRWLELIKDYDLVIDYHPGKANVVADALSRK 951
Score = 55.1 bits (131), Expect(4) = 2e-38
Identities = 27/58 (46%), Positives = 36/58 (62%)
Frame = +3
Query: 87 PWTKLTQKDVSFVWANDCESAF*EMKKNLTTTPILFLLELDEELVIYTDVSGTKLGCV 260
P T+LT+K V FVW + CE+ F E+K LT P+L L + V+Y+D S LGCV
Sbjct: 793 PLTRLTRKGVKFVWDDVCENRFQELKNRLTFAPVLTLPVNGKGFVVYSDASKLGLGCV 850
Score = 53.1 bits (126), Expect(4) = 2e-38
Identities = 27/39 (69%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 CVIHED-RVIAYASRQ*KIH*RNYPAHDLELVAVVFALK 370
CV+ +D +V+AYASRQ K H NYP HDLEL AVVFALK
Sbjct: 849 CVLMQDEKVVAYASRQLKRHEANYPTHDLELAAVVFALK 887
Score = 38.5 bits (88), Expect(4) = 2e-38
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = +1
Query: 4 TVTEVRNFYVGLAGYYRRIVESFSKLAS 87
TVTE+R+F +GLAGYYRR V+ FS +A+
Sbjct: 766 TVTEIRSF-LGLAGYYRRFVQGFSLIAA 792