BLASTX nr result
ID: Cocculus23_contig00028441
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00028441
(520 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme... 97 3e-18
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 96 7e-18
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 96 7e-18
emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera] 95 1e-17
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 89 6e-16
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme... 89 6e-16
ref|XP_004967185.1| PREDICTED: probable RNA-dependent RNA polyme... 86 7e-15
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 85 1e-14
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 85 1e-14
gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus no... 84 2e-14
ref|NP_001042304.1| Os01g0198000 [Oryza sativa Japonica Group] g... 84 2e-14
sp|Q5QMN4.2|RDR4_ORYSJ RecName: Full=Probable RNA-dependent RNA ... 84 2e-14
gb|EEE54053.1| hypothetical protein OsJ_00746 [Oryza sativa Japo... 84 2e-14
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 84 3e-14
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 84 3e-14
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 84 3e-14
ref|NP_001042303.1| Os01g0197900 [Oryza sativa Japonica Group] g... 84 3e-14
ref|XP_002455002.1| hypothetical protein SORBIDRAFT_03g002800 [S... 84 3e-14
gb|EEE54052.1| hypothetical protein OsJ_00745 [Oryza sativa Japo... 84 3e-14
gb|EEC70113.1| hypothetical protein OsI_00772 [Oryza sativa Indi... 84 3e-14
>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 96.7 bits (239), Expect = 3e-18
Identities = 44/80 (55%), Positives = 58/80 (72%)
Frame = -2
Query: 519 QKYKQILYGAAEFEASPRNEEDIFNEALAIYKNVYKHAKTSGVGRCSFAWKVAGRALCKL 340
+KYK+ILYGA E E SPR+ E+++ EALAIY+ Y HA + V C FAWKVAG AL KL
Sbjct: 975 KKYKEILYGAEELEGSPRSNEEVYQEALAIYQVTYDHAMSRSVRNCGFAWKVAGSALFKL 1034
Query: 339 HAMEQDRDNFFCLKSVLREV 280
+A++ +F CL SV+RE+
Sbjct: 1035 YAIKHSERSFHCLPSVMREI 1054
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 95.5 bits (236), Expect = 7e-18
Identities = 48/82 (58%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = -2
Query: 516 KYKQILYGAAEFEASPRNEEDIFNEALAIYKNVYKHA-KTSGVGRCSFAWKVAGRALCKL 340
KYKQILYGAAEFE SPRN EDIF+EALAIY Y+ + V C+F W+VAGRALCKL
Sbjct: 848 KYKQILYGAAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRALCKL 907
Query: 339 HAMEQDRDNFFCLKSVLREVLN 274
+ ++ + C+ SVLR+V N
Sbjct: 908 YTVKLGEKSMVCVPSVLRQVFN 929
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 95.5 bits (236), Expect = 7e-18
Identities = 48/82 (58%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = -2
Query: 516 KYKQILYGAAEFEASPRNEEDIFNEALAIYKNVYKHA-KTSGVGRCSFAWKVAGRALCKL 340
KYKQILYGAAEFE SPRN EDIF+EALAIY Y+ + V C+F W+VAGRALCKL
Sbjct: 862 KYKQILYGAAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRALCKL 921
Query: 339 HAMEQDRDNFFCLKSVLREVLN 274
+ ++ + C+ SVLR+V N
Sbjct: 922 YTVKLGEKSMVCVPSVLRQVFN 943
>emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
Length = 1202
Score = 94.7 bits (234), Expect = 1e-17
Identities = 48/82 (58%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = -2
Query: 516 KYKQILYGAAEFEASPRNEEDIFNEALAIYKNVYKHA-KTSGVGRCSFAWKVAGRALCKL 340
KYKQILYGAAEFE SPR EDIF+EALAIY Y+ A + V C+F W+VAGRALCKL
Sbjct: 1121 KYKQILYGAAEFEESPRKLEDIFDEALAIYHVTYEFAINGARVSYCNFPWRVAGRALCKL 1180
Query: 339 HAMEQDRDNFFCLKSVLREVLN 274
+ ++ + C+ SVLR+V N
Sbjct: 1181 YTVKLGEKSMVCVPSVLRQVFN 1202
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 89.0 bits (219), Expect = 6e-16
Identities = 44/82 (53%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = -2
Query: 519 QKYKQILYGAAEFEASPRNEEDIFNEALAIYKNVYKHAKT-SGVGRCSFAWKVAGRALCK 343
Q YK+ILYGA E+E R E+IF EA IY Y +AK S + +C FAWKVAG ALC+
Sbjct: 906 QNYKKILYGAQEYEERTRPREEIFREACEIYAISYFYAKEKSDIAKCGFAWKVAGCALCE 965
Query: 342 LHAMEQDRDNFFCLKSVLREVL 277
LHA++Q +++ CL SVL+E+L
Sbjct: 966 LHALKQKKNSITCLSSVLQELL 987
>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 1011
Score = 89.0 bits (219), Expect = 6e-16
Identities = 44/82 (53%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = -2
Query: 519 QKYKQILYGAAEFEASPRNEEDIFNEALAIYKNVYKHAK-TSGVGRCSFAWKVAGRALCK 343
+KYK +LYGA EFE + R EDIF+EALAIY Y +A+ T + +C FAWKVAG ALC+
Sbjct: 930 KKYKMLLYGAVEFEQTVRKTEDIFDEALAIYHVTYDNARITYSIEKCGFAWKVAGSALCR 989
Query: 342 LHAMEQDRDNFFCLKSVLREVL 277
+HAM + + L SVL+E+L
Sbjct: 990 IHAMYRKEKDLPILPSVLQEIL 1011
>ref|XP_004967185.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Setaria
italica]
Length = 763
Score = 85.5 bits (210), Expect = 7e-15
Identities = 42/78 (53%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Frame = -2
Query: 519 QKYKQILYGAAEFEASPRNEEDIFNEALAIYKNVYKHA-KTSGVGRCSFAWKVAGRALCK 343
Q+YK +LY A EFE SPR D+FNEA A+Y+ VY+HA + V +C FAWKVAGRALC+
Sbjct: 676 QEYKWMLYKAEEFEYSPRERFDLFNEACAVYQVVYEHAVPRNEVSKCGFAWKVAGRALCQ 735
Query: 342 LHAMEQDRDNFFCLKSVL 289
L+ ++ D C SVL
Sbjct: 736 LYTLKHGGDTVLCSFSVL 753
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 84.7 bits (208), Expect = 1e-14
Identities = 46/81 (56%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = -2
Query: 519 QKYKQILYGAAEFEASPRNEEDIFNEALAIYKNVYK-HAKTSGVGRCSFAWKVAGRALCK 343
+KYKQILYGAAEFE S R E+I+NEALAIY Y A V CSFAW+VAG AL K
Sbjct: 931 EKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRK 990
Query: 342 LHAMEQDRDNFFCLKSVLREV 280
+A Q + C SVLRE+
Sbjct: 991 FYARRQGDRSMLCSASVLREI 1011
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 84.7 bits (208), Expect = 1e-14
Identities = 46/81 (56%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = -2
Query: 519 QKYKQILYGAAEFEASPRNEEDIFNEALAIYKNVYK-HAKTSGVGRCSFAWKVAGRALCK 343
+KYKQILYGAAEFE S R E+I+NEALAIY Y A V CSFAW+VAG AL K
Sbjct: 933 EKYKQILYGAAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRK 992
Query: 342 LHAMEQDRDNFFCLKSVLREV 280
+A Q + C SVLRE+
Sbjct: 993 FYARRQGDRSMLCSASVLREI 1013
>gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus notabilis]
Length = 521
Score = 84.0 bits (206), Expect = 2e-14
Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Frame = -2
Query: 519 QKYKQILYGAAEFEASPRNEEDIFNEALAIYKNVYKHA-KTSGVGRCSFAWKVAGRALCK 343
+KYK++LYGA E E S + E+I+NEALAIY Y +A V CSFAW +AG AL K
Sbjct: 439 RKYKRLLYGAEELEESTKKMEEIYNEALAIYHVCYDYAISQRKVSYCSFAWNIAGSALLK 498
Query: 342 LHAMEQDRDN-FFCLKSVLREVL 277
LHA ++ + FFCL SVL+EVL
Sbjct: 499 LHAFKKIGERAFFCLPSVLKEVL 521
>ref|NP_001042304.1| Os01g0198000 [Oryza sativa Japonica Group]
gi|56201772|dbj|BAD73222.1| RNA-dependent RNA polymerase
-like [Oryza sativa Japonica Group]
gi|56201879|dbj|BAD73329.1| RNA-dependent RNA polymerase
-like [Oryza sativa Japonica Group]
gi|113531835|dbj|BAF04218.1| Os01g0198000 [Oryza sativa
Japonica Group] gi|215693837|dbj|BAG89036.1| unnamed
protein product [Oryza sativa Japonica Group]
Length = 582
Score = 84.0 bits (206), Expect = 2e-14
Identities = 38/79 (48%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Frame = -2
Query: 519 QKYKQILYGAAEFEASPRNEEDIFNEALAIYKNVYKHAKT-SGVGRCSFAWKVAGRALCK 343
+KYK +LYGA+EFE +PR+ +D+F+EA AIY+ Y+ A++ + V RC FAWKVAGRALC
Sbjct: 494 EKYKHLLYGASEFEETPRDLDDVFSEACAIYQIAYEKARSANNVARCGFAWKVAGRALCH 553
Query: 342 LHAMEQDRDNFFCLKSVLR 286
+ ++ + + C +LR
Sbjct: 554 FYTVKNEGNAVVCSLQLLR 572
>sp|Q5QMN4.2|RDR4_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 4; Short=OsRDR4
Length = 1183
Score = 84.0 bits (206), Expect = 2e-14
Identities = 38/79 (48%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Frame = -2
Query: 519 QKYKQILYGAAEFEASPRNEEDIFNEALAIYKNVYKHAKT-SGVGRCSFAWKVAGRALCK 343
+KYK +LYGA+EFE +PR+ +D+F+EA AIY+ Y+ A++ + V RC FAWKVAGRALC
Sbjct: 1095 EKYKHLLYGASEFEETPRDLDDVFSEACAIYQIAYEKARSANNVARCGFAWKVAGRALCH 1154
Query: 342 LHAMEQDRDNFFCLKSVLR 286
+ ++ + + C +LR
Sbjct: 1155 FYTVKNEGNAVVCSLQLLR 1173
>gb|EEE54053.1| hypothetical protein OsJ_00746 [Oryza sativa Japonica Group]
Length = 1148
Score = 84.0 bits (206), Expect = 2e-14
Identities = 38/79 (48%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Frame = -2
Query: 519 QKYKQILYGAAEFEASPRNEEDIFNEALAIYKNVYKHAKT-SGVGRCSFAWKVAGRALCK 343
+KYK +LYGA+EFE +PR+ +D+F+EA AIY+ Y+ A++ + V RC FAWKVAGRALC
Sbjct: 1060 EKYKHLLYGASEFEETPRDLDDVFSEACAIYQIAYEKARSANNVARCGFAWKVAGRALCH 1119
Query: 342 LHAMEQDRDNFFCLKSVLR 286
+ ++ + + C +LR
Sbjct: 1120 FYTVKNEGNAVVCSLQLLR 1138
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 83.6 bits (205), Expect = 3e-14
Identities = 42/83 (50%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Frame = -2
Query: 519 QKYKQILYGAAEFEASPRNEEDIFNEALAIYKNVYKHAKTSG-VGRCSFAWKVAGRALCK 343
+KYK+ILY AAEF S R +E+IF EA A+Y+ Y HAK G VG+C FAW+VAG ALC
Sbjct: 784 KKYKEILYEAAEFNLSRRRDEEIFEEARALYQVTYNHAKRQGAVGKCGFAWRVAGLALCT 843
Query: 342 LHAME-QDRDNFFCLKSVLREVL 277
L+ ++ Q+ C S L+ +L
Sbjct: 844 LYVLKNQEERPLICSPSALKGIL 866
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 83.6 bits (205), Expect = 3e-14
Identities = 42/83 (50%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Frame = -2
Query: 519 QKYKQILYGAAEFEASPRNEEDIFNEALAIYKNVYKHAKTSG-VGRCSFAWKVAGRALCK 343
+KYK+ LY AAEF S R +E+IF EA+A+Y+ Y HAK+ G VG CSFAW+VAG ALC
Sbjct: 795 RKYKEFLYEAAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCT 854
Query: 342 LHAME-QDRDNFFCLKSVLREVL 277
L+ ++ Q C S L+ +L
Sbjct: 855 LYVLKNQGERPMICSPSALKGIL 877
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 83.6 bits (205), Expect = 3e-14
Identities = 42/83 (50%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Frame = -2
Query: 519 QKYKQILYGAAEFEASPRNEEDIFNEALAIYKNVYKHAKTSG-VGRCSFAWKVAGRALCK 343
+KYK+ LY AAEF S R +E+IF EA+A+Y+ Y HAK+ G VG CSFAW+VAG ALC
Sbjct: 817 RKYKEFLYEAAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCT 876
Query: 342 LHAME-QDRDNFFCLKSVLREVL 277
L+ ++ Q C S L+ +L
Sbjct: 877 LYVLKNQGERPMICSPSALKGIL 899
>ref|NP_001042303.1| Os01g0197900 [Oryza sativa Japonica Group]
gi|56201770|dbj|BAD73220.1| unknown protein [Oryza
sativa Japonica Group] gi|56201877|dbj|BAD73327.1|
unknown protein [Oryza sativa Japonica Group]
gi|113531834|dbj|BAF04217.1| Os01g0197900 [Oryza sativa
Japonica Group]
Length = 387
Score = 83.6 bits (205), Expect = 3e-14
Identities = 38/82 (46%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Frame = -2
Query: 519 QKYKQILYGAAEFEASPRNEEDIFNEALAIYKNVYKHAKTSG-VGRCSFAWKVAGRALCK 343
+KYK +LY A+EFE + R+ +D+F+EA IY+ VY+ A+ S RC FAWKVAGRALC
Sbjct: 300 EKYKHMLYDASEFEQTQRDPDDVFSEACVIYQIVYEKARWSNDASRCGFAWKVAGRALCH 359
Query: 342 LHAMEQDRDNFFCLKSVLREVL 277
+A++ + D C +LR+++
Sbjct: 360 FYALKNEGDTALCSLPLLRKII 381
>ref|XP_002455002.1| hypothetical protein SORBIDRAFT_03g002800 [Sorghum bicolor]
gi|241926977|gb|EES00122.1| hypothetical protein
SORBIDRAFT_03g002800 [Sorghum bicolor]
Length = 1127
Score = 83.6 bits (205), Expect = 3e-14
Identities = 39/80 (48%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Frame = -2
Query: 519 QKYKQILYGAAEFEASPRNEEDIFNEALAIYKNVYKHAKT-SGVGRCSFAWKVAGRALCK 343
Q+YK+ LY A EFE SPR + D+ NEA A+Y+ VY++A + + + +C FAWKVAGRALC+
Sbjct: 1041 QEYKRKLYEAEEFEQSPREQLDLLNEACAVYQVVYEYAMSRNDIAKCGFAWKVAGRALCR 1100
Query: 342 LHAMEQDRDNFFCLKSVLRE 283
L+ +++ D C SVL +
Sbjct: 1101 LYTLKRGGDTALCSFSVLED 1120
>gb|EEE54052.1| hypothetical protein OsJ_00745 [Oryza sativa Japonica Group]
Length = 1243
Score = 83.6 bits (205), Expect = 3e-14
Identities = 38/82 (46%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Frame = -2
Query: 519 QKYKQILYGAAEFEASPRNEEDIFNEALAIYKNVYKHAKTSG-VGRCSFAWKVAGRALCK 343
+KYK +LY A+EFE + R+ +D+F+EA IY+ VY+ A+ S RC FAWKVAGRALC
Sbjct: 1156 EKYKHMLYDASEFEQTQRDPDDVFSEACVIYQIVYEKARWSNDASRCGFAWKVAGRALCH 1215
Query: 342 LHAMEQDRDNFFCLKSVLREVL 277
+A++ + D C +LR+++
Sbjct: 1216 FYALKNEGDTALCSLPLLRKII 1237
>gb|EEC70113.1| hypothetical protein OsI_00772 [Oryza sativa Indica Group]
Length = 1155
Score = 83.6 bits (205), Expect = 3e-14
Identities = 38/82 (46%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Frame = -2
Query: 519 QKYKQILYGAAEFEASPRNEEDIFNEALAIYKNVYKHAKTSG-VGRCSFAWKVAGRALCK 343
+KYK +LY A+EFE + R+ +D+F+EA IY+ VY+ A+ S RC FAWKVAGRALC
Sbjct: 1068 EKYKHMLYDASEFEQTQRDPDDVFSEACVIYQIVYEKARWSNDASRCGFAWKVAGRALCH 1127
Query: 342 LHAMEQDRDNFFCLKSVLREVL 277
+A++ + D C +LR+++
Sbjct: 1128 FYALKNEGDTALCSLPLLRKII 1149