BLASTX nr result
ID: Cocculus23_contig00027939
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00027939
(1214 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACN32036.1| unknown [Zea mays] 137 1e-43
gb|ACL54615.1| unknown [Zea mays] 136 2e-43
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera] 134 8e-41
emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera] 129 3e-39
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera] 126 1e-37
emb|CAN82769.1| hypothetical protein VITISV_037882 [Vitis vinifera] 129 4e-37
emb|CAN69851.1| hypothetical protein VITISV_009554 [Vitis vinifera] 127 3e-36
ref|NP_001041883.1| Os01g0123000 [Oryza sativa Japonica Group] g... 115 4e-36
emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis ... 111 6e-36
gb|AAU90262.1| integrase core domain containing protein [Oryza s... 109 1e-35
ref|XP_004967136.1| PREDICTED: uncharacterized protein LOC101762... 120 2e-35
gb|ABA94311.1| retrotransposon protein, putative, Ty1-copia subc... 117 8e-35
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group... 116 2e-34
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-... 113 4e-34
ref|XP_004514187.1| PREDICTED: uncharacterized protein LOC101501... 122 4e-34
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 113 5e-34
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 100 3e-33
ref|XP_004958843.1| PREDICTED: uncharacterized protein LOC101772... 115 3e-33
emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group] 115 9e-33
gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Ho... 106 2e-32
>gb|ACN32036.1| unknown [Zea mays]
Length = 376
Score = 137 bits (345), Expect(2) = 1e-43
Identities = 84/259 (32%), Positives = 127/259 (49%), Gaps = 11/259 (4%)
Frame = +2
Query: 449 TTSHGLWSAINRNFGMISRSRHIQLKGELYSVIKGSMTITEYFSKIKGIADYLLAAGCPI 628
TT+ G WS + R + SR+R +Q++ +L ++ KG +T EYF K+K +AD L A G +
Sbjct: 115 TTARGAWSTLERMYASSSRARIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRL 174
Query: 629 DDITLISCLLHGLGPEFDVVSALISSGAGEISIEETFSLLLVQETKIQHHNTMTQLTFSA 808
+D IS LL GL ++D + I++ +I + ++ LL ET+ ++H + Q++
Sbjct: 175 EDEEFISYLLRGLPADYDSLVTSITTRPDTYTISDVYAHLLSFETRQEYHTAVGQISSVN 234
Query: 809 NY---------AFGKQPQS--NNNSNTYQGRGTNNFXXXXXXXXXXXXXXXKCICQICKK 955
N AFG+ + + GRG N CQIC K
Sbjct: 235 NANRVPSRGGGAFGQNGRGGRGRGGRSQPGRGNNR----PPARPPSNNSSSSGTCQICGK 290
Query: 956 PNHSAL*CWYRFDHEFVXXXXXXXXXXXXXXXALLAMPESIADPGWYADSGASNHITADL 1135
NH+AL CW+RFD + A A E DP WY DSGA++HIT+DL
Sbjct: 291 GNHNALQCWHRFDQAY--------QAESTVKQAAAATHEYAVDPNWYMDSGATDHITSDL 342
Query: 1136 ENLSIKSDYKGKQQLMVGN 1192
E L+ + Y G ++ V N
Sbjct: 343 ERLTTRERYTGGDKIQVAN 361
Score = 67.8 bits (164), Expect(2) = 1e-43
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Frame = +1
Query: 118 TSVSQISGSQIVKNVLPFSGSSTNLTFKLNRNNFLLWQSQVLTAVQGNRLEGFLFGTTPY 297
+++S + G V + +P S ++ KLN N+LLW +QVL ++ L G + G+ P
Sbjct: 2 STMSTVDGVAAVFSSMPTPAFSQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPA 61
Query: 298 PYENIAI--GDEAGSITLEANSAHGVWIQQDQLLLNSFMASLSEEIFSQVL 444
P + +A+ + +G T+ N W QDQL+L+ +SLSEE+ + V+
Sbjct: 62 PRQTVAVDPAEGSGGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVV 112
>gb|ACL54615.1| unknown [Zea mays]
Length = 376
Score = 136 bits (342), Expect(2) = 2e-43
Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 11/259 (4%)
Frame = +2
Query: 449 TTSHGLWSAINRNFGMISRSRHIQLKGELYSVIKGSMTITEYFSKIKGIADYLLAAGCPI 628
TT+ G WS + R + SR R +Q++ +L ++ KG +T EYF K+K +AD L A G +
Sbjct: 115 TTARGAWSTLERMYASSSRVRIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRL 174
Query: 629 DDITLISCLLHGLGPEFDVVSALISSGAGEISIEETFSLLLVQETKIQHHNTMTQLTFSA 808
+D IS LL GL ++D + I++ +I + ++ LL ET+ ++H + Q++
Sbjct: 175 EDEEFISYLLRGLPADYDSLVTSITTRPDTYTISDVYAHLLSFETRQEYHTAVGQISSVN 234
Query: 809 NY---------AFGKQPQS--NNNSNTYQGRGTNNFXXXXXXXXXXXXXXXKCICQICKK 955
N AFG+ + + GRG N CQIC K
Sbjct: 235 NANRVPSRGGGAFGQNGRGGRGRGGRSQPGRGNNR----PPARPPSNNSSSSGTCQICGK 290
Query: 956 PNHSAL*CWYRFDHEFVXXXXXXXXXXXXXXXALLAMPESIADPGWYADSGASNHITADL 1135
NH+AL CW+RFD + A A E DP WY DSGA++HIT+DL
Sbjct: 291 GNHNALQCWHRFDQAY--------QAESTVKQAAAATHEYAVDPNWYMDSGATDHITSDL 342
Query: 1136 ENLSIKSDYKGKQQLMVGN 1192
E L+ + Y G ++ V N
Sbjct: 343 ERLTTRERYTGGDKIQVAN 361
Score = 67.8 bits (164), Expect(2) = 2e-43
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Frame = +1
Query: 118 TSVSQISGSQIVKNVLPFSGSSTNLTFKLNRNNFLLWQSQVLTAVQGNRLEGFLFGTTPY 297
+++S + G V + +P S ++ KLN N+LLW +QVL ++ L G + G+ P
Sbjct: 2 STMSTVDGVAAVFSSMPTPAFSQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPA 61
Query: 298 PYENIAI--GDEAGSITLEANSAHGVWIQQDQLLLNSFMASLSEEIFSQVL 444
P + +A+ + +G T+ N W QDQL+L+ +SLSEE+ + V+
Sbjct: 62 PRQTVAVDPAEGSGGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVV 112
>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
Length = 1432
Score = 134 bits (337), Expect(2) = 8e-41
Identities = 89/267 (33%), Positives = 131/267 (49%), Gaps = 20/267 (7%)
Frame = +2
Query: 452 TSHGLWSAINRNFGMISRSRHIQLKGELYSVIKGSMTITEYFSKIKGIADYLLAAGCPID 631
TSH W+A+ F SR+R +QL+ EL S KGSM++ +Y KIKG AD L A G P+
Sbjct: 116 TSHSAWNALESIFSSSSRARIMQLRLELQSTKKGSMSMIDYIMKIKGAADNLAAIGEPVS 175
Query: 632 DITLISCLLHGLGPEFDVVSALISSGAGEISIEETFSLLLVQETKIQHHNTMTQLTFSAN 811
+ + LL GLG +++ V I+ +IS+E S+LL E +++ +++ Q+ SAN
Sbjct: 176 EQDQVMNLLGGLGSDYNAVVTAINIRDDKISLEAIHSMLLAFEHRLEQQSSIEQM--SAN 233
Query: 812 YAF---------------GKQPQSNNNSNTYQGRGTNNFXXXXXXXXXXXXXXXKCICQI 946
YA G+ NNN+ TY+GRG K CQ+
Sbjct: 234 YASSSNNRGGGRKFNGGRGQGYSPNNNNYTYRGRGRGG--RNGQGGRQNSSPSEKPQCQL 291
Query: 947 CKKPNHSAL*CWYRFDHEF-----VXXXXXXXXXXXXXXXALLAMPESIADPGWYADSGA 1111
C K H+A C++RFD F + + + AD WY DSGA
Sbjct: 292 CGKFGHTAQICYHRFDISFQGGQTTISHSLNNGNQNNIPAMVASASNNPADESWYLDSGA 351
Query: 1112 SNHITADLENLSIKSDYKGKQQLMVGN 1192
S+H+T +L NL+ S Y G ++ +GN
Sbjct: 352 SHHLTQNLGNLTSTSPYTGTDKVTIGN 378
Score = 61.2 bits (147), Expect(2) = 8e-41
Identities = 37/131 (28%), Positives = 68/131 (51%)
Frame = +1
Query: 58 LADPSMTTPCSSPFKGSGSTTSVSQISGSQIVKNVLPFSGSSTNLTFKLNRNNFLLWQSQ 237
+A + SS GSG +++++ I Q++ + LP KL+R N++LW+SQ
Sbjct: 1 MASTPTQSSSSSGSIGSGQSSTMASIPSYQMLNHTLPV---------KLDRTNYILWRSQ 51
Query: 238 VLTAVQGNRLEGFLFGTTPYPYENIAIGDEAGSITLEANSAHGVWIQQDQLLLNSFMASL 417
+ + N E F+ GT+ P ++++ G N A W +QD+ +L+ +SL
Sbjct: 52 IDNVIFANGFEDFIDGTSICPEKDLSPG--------VMNPAFVAWRRQDRTILSWIYSSL 103
Query: 418 SEEIFSQVLGH 450
+ I +Q++GH
Sbjct: 104 TPGIMAQIIGH 114
>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
Length = 1365
Score = 129 bits (324), Expect(2) = 3e-39
Identities = 82/265 (30%), Positives = 130/265 (49%), Gaps = 18/265 (6%)
Frame = +2
Query: 452 TSHGLWSAINRNFGMISRSRHIQLKGELYSVIKGSMTITEYFSKIKGIADYLLAAGCPID 631
+SH W+A+ + F SR+R +QL+ E S KGSM++ +Y K+KG AD L A G P+
Sbjct: 113 SSHSAWNALEKIFSSCSRARIMQLRLEFQSTKKGSMSMIDYIMKVKGAADSLAAIGEPVS 172
Query: 632 DITLISCLLHGLGPEFDVVSALISSGAGEISIEETFSLLLVQETKIQHHNTMTQL-TFSA 808
+ I LL GLG +++ V I+ +IS+E S+LL E +++ ++ QL SA
Sbjct: 173 EQDQIMNLLGGLGSDYNAVVTAINIREDKISLEAVHSMLLAFEQRLEQQGSIEQLPAMSA 232
Query: 809 NYAF-------------GKQPQSNNNSNTYQGRGTNNFXXXXXXXXXXXXXXXKCICQIC 949
NYA G+ P ++ ++GRG + CQ+C
Sbjct: 233 NYASSSNNRGGGRKYNGGRGPNFMMTNSNFRGRGRGGRYGQSGRQNSSSSERPQ--CQLC 290
Query: 950 KKPNHSAL*CWYRFDHEFV----XXXXXXXXXXXXXXXALLAMPESIADPGWYADSGASN 1117
K H+ C++RFD F A++A ++AD WY DSGAS+
Sbjct: 291 GKFGHTVQVCYHRFDITFQSTQNNTTGVSNSGNSNSMPAMVASSNNLADDNWYLDSGASH 350
Query: 1118 HITADLENLSIKSDYKGKQQLMVGN 1192
H+T ++ NL+ + Y G ++ +GN
Sbjct: 351 HLTQNVANLTNATPYTGADKVTIGN 375
Score = 61.2 bits (147), Expect(2) = 3e-39
Identities = 38/127 (29%), Positives = 63/127 (49%)
Frame = +1
Query: 70 SMTTPCSSPFKGSGSTTSVSQISGSQIVKNVLPFSGSSTNLTFKLNRNNFLLWQSQVLTA 249
S T SS GS ++S++ I Q++ LP KL+R N++LW+SQ+
Sbjct: 2 SSTASQSSSSSGSAQSSSMASIPSYQMLNYSLPV---------KLDRTNYILWRSQIDNV 52
Query: 250 VQGNRLEGFLFGTTPYPYENIAIGDEAGSITLEANSAHGVWIQQDQLLLNSFMASLSEEI 429
+ N E F+ GT+ P + + E N A W +QD+ +L+ +SL+ I
Sbjct: 53 IFANGFEDFIDGTSXCPEKELR--------PXEINPAFVAWRRQDRTILSWIYSSLTPGI 104
Query: 430 FSQVLGH 450
+Q++GH
Sbjct: 105 MAQIIGH 111
>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
Length = 1402
Score = 126 bits (317), Expect(2) = 1e-37
Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 18/265 (6%)
Frame = +2
Query: 452 TSHGLWSAINRNFGMISRSRHIQLKGELYSVIKGSMTITEYFSKIKGIADYLLAAGCPID 631
+SH W+A+ + F SR+R +QL E S KGSM++ +Y K+KG AD L A G P+
Sbjct: 113 SSHSAWNALEKIFSSCSRARIMQLXLEFQSTKKGSMSMIDYIMKVKGAADSLAAIGEPVS 172
Query: 632 DITLISCLLHGLGPEFDVVSALISSGAGEISIEETFSLLLVQETKIQHHNTMTQL-TFSA 808
+ I LL GLG +++ V I+ +IS+E S+LL E +++ ++ QL SA
Sbjct: 173 EQDQIMNLLGGLGSDYNAVVTAINIREDKISLEAVHSMLLAFEQRLEQQGSIEQLPAMSA 232
Query: 809 NYAF-------------GKQPQSNNNSNTYQGRGTNNFXXXXXXXXXXXXXXXKCICQIC 949
NYA G+ P ++ ++GRG + CQ+C
Sbjct: 233 NYASXSNNRGGGRKYNGGRGPNFMMTNSNFRGRGRGXRYGQSGRQNSSSSERPQ--CQLC 290
Query: 950 KKPNHSAL*CWYRFDHEFV----XXXXXXXXXXXXXXXALLAMPESIADPGWYADSGASN 1117
K H+ C++RFD F A++A + AD WY DSGAS+
Sbjct: 291 GKFGHTVQVCYHRFDITFQSTQNNTTGVSNSGNSNXMPAMVAXSNNXADDNWYLDSGASH 350
Query: 1118 HITADLENLSIKSDYKGKQQLMVGN 1192
H+T ++ NL+ + Y G ++ +GN
Sbjct: 351 HLTQNVANLTNATPYTGADKVTIGN 375
Score = 58.2 bits (139), Expect(2) = 1e-37
Identities = 38/127 (29%), Positives = 63/127 (49%)
Frame = +1
Query: 70 SMTTPCSSPFKGSGSTTSVSQISGSQIVKNVLPFSGSSTNLTFKLNRNNFLLWQSQVLTA 249
S T SS GS ++S++ I Q++ LP KL+R N++LW+SQ+
Sbjct: 2 SSTASQSSSSSGSAQSSSMASIPSYQMLNYSLPV---------KLDRTNYILWRSQIDNV 52
Query: 250 VQGNRLEGFLFGTTPYPYENIAIGDEAGSITLEANSAHGVWIQQDQLLLNSFMASLSEEI 429
+ N E F+ GT+ P + + G E N A +QD+ +L+ +SL+ I
Sbjct: 53 IFANGFEDFIDGTSVCPEKELRPG--------EINPAFVAXRRQDRTILSWIYSSLTPGI 104
Query: 430 FSQVLGH 450
+Q++GH
Sbjct: 105 MAQIIGH 111
>emb|CAN82769.1| hypothetical protein VITISV_037882 [Vitis vinifera]
Length = 2220
Score = 129 bits (323), Expect(2) = 4e-37
Identities = 82/265 (30%), Positives = 128/265 (48%), Gaps = 18/265 (6%)
Frame = +2
Query: 452 TSHGLWSAINRNFGMISRSRHIQLKGELYSVIKGSMTITEYFSKIKGIADYLLAAGCPID 631
+SH W+A+ + F SR+R +QL+ EL S KGS+++ +Y K+KG AD L A G P+
Sbjct: 958 SSHSAWNALEKTFSSSSRARIMQLRLELQSTKKGSLSMIDYIMKVKGAADSLAAIGEPVS 1017
Query: 632 DITLISCLLHGLGPEFDVVSALISSGAGEISIEETFSLLLVQETKIQHHNTMTQLT-FSA 808
+ + LL GLG +++ V I+ +ISIE S+LL E +++ +++ Q + SA
Sbjct: 1018 EQDQVMNLLGGLGSDYNAVVTAINIRDDKISIEAVHSMLLAFEHRLEQQSSIKQFSPISA 1077
Query: 809 NYAF-------------GKQPQSNNNSNTYQGRGTNNFXXXXXXXXXXXXXXXKCICQIC 949
NYA G+ N + Y RG K CQ+C
Sbjct: 1078 NYASSSNNRGGGRRYNGGRGQNHTPNISNYTYRGCGRGGRYGQNGRHNSNSSEKPQCQLC 1137
Query: 950 KKPNHSAL*CWYRFDHEF----VXXXXXXXXXXXXXXXALLAMPESIADPGWYADSGASN 1117
K H+ C++RFD + A++A ++AD WY DSGAS+
Sbjct: 1138 GKFGHTVQICYHRFDISYQSSQSSNTSPSNAGNPNSIPAMVASSNNLADDTWYLDSGASH 1197
Query: 1118 HITADLENLSIKSDYKGKQQLMVGN 1192
H+T + NL+ S Y G ++ +GN
Sbjct: 1198 HLTQSVGNLTSSSPYTGIDKVTIGN 1222
Score = 54.3 bits (129), Expect(2) = 4e-37
Identities = 36/127 (28%), Positives = 63/127 (49%)
Frame = +1
Query: 70 SMTTPCSSPFKGSGSTTSVSQISGSQIVKNVLPFSGSSTNLTFKLNRNNFLLWQSQVLTA 249
S + SS GSG +T+++ Q++ + L KL+R N++LW+SQ+
Sbjct: 847 STQSSSSSGSIGSGQSTTMASHPSYQMLNHTL---------LVKLDRTNYILWKSQIDNV 897
Query: 250 VQGNRLEGFLFGTTPYPYENIAIGDEAGSITLEANSAHGVWIQQDQLLLNSFMASLSEEI 429
V N E F+ G + P + ++ G N A W +QD+ +L+ +SL+ I
Sbjct: 898 VFANGFEDFIDGFSICPDKELSSG--------LINPAFVAWRRQDRTILSWLYSSLTPAI 949
Query: 430 FSQVLGH 450
+Q++GH
Sbjct: 950 MAQIIGH 956
>emb|CAN69851.1| hypothetical protein VITISV_009554 [Vitis vinifera]
Length = 1282
Score = 127 bits (318), Expect(2) = 3e-36
Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 18/263 (6%)
Frame = +2
Query: 458 HGLWSAINRNFGMISRSRHIQLKGELYSVIKGSMTITEYFSKIKGIADYLLAAGCPIDDI 637
H W+A+ + F SR+R +QL+ EL S KGS ++ +Y K+KG AD L A G P+ +
Sbjct: 115 HSAWNALEKTFSSSSRARIMQLRLELQSTKKGSXSMIDYIMKVKGAADSLAAIGEPVSEQ 174
Query: 638 TLISCLLHGLGPEFDVVSALISSGAGEISIEETFSLLLVQETKIQHHNTMTQLT-FSANY 814
+ LL GLG +++ V I+ +ISIE S+LLV E +++ +++ Q + SANY
Sbjct: 175 DQVMNLLDGLGSDYNAVVTAINIRDDKISIEAVHSMLLVFEHRLEQQSSIEQFSPISANY 234
Query: 815 AF-------------GKQPQSNNNSNTYQGRGTNNFXXXXXXXXXXXXXXXKCICQICKK 955
A G+ N++ Y RG+ K CQ+C K
Sbjct: 235 ASSSNSRGGGRRYNGGRGQNHTPNTSNYTYRGSGRGGRYGQNERHNSNSSEKPQCQLCGK 294
Query: 956 PNHSAL*CWYRFDHEF----VXXXXXXXXXXXXXXXALLAMPESIADPGWYADSGASNHI 1123
++ C++RFD + A++A +AD WY DSGAS+H+
Sbjct: 295 FGYTVQICYHRFDISYQSSQSSNTSPSNASNPNSIPAMVASSNYLADDTWYLDSGASHHL 354
Query: 1124 TADLENLSIKSDYKGKQQLMVGN 1192
T + NL+ S Y G ++ +GN
Sbjct: 355 TQSVGNLTSSSPYTGTDKVTIGN 377
Score = 53.5 bits (127), Expect(2) = 3e-36
Identities = 34/121 (28%), Positives = 60/121 (49%)
Frame = +1
Query: 88 SSPFKGSGSTTSVSQISGSQIVKNVLPFSGSSTNLTFKLNRNNFLLWQSQVLTAVQGNRL 267
SS G G +T+++ Q++ + LP KL+R N++LW+SQ+ V N
Sbjct: 8 SSDSIGFGQSTTMASHXSYQMLNHTLPV---------KLDRTNYILWKSQIDNVVFANGF 58
Query: 268 EGFLFGTTPYPYENIAIGDEAGSITLEANSAHGVWIQQDQLLLNSFMASLSEEIFSQVLG 447
E F+ G++ P + + G N A W +QD+ +L+ +SL+ +Q++G
Sbjct: 59 EDFIDGSSICPDKELXSG--------LINPAFVAWRRQDRTILSWLYSSLTPAXMAQIIG 110
Query: 448 H 450
H
Sbjct: 111 H 111
>ref|NP_001041883.1| Os01g0123000 [Oryza sativa Japonica Group]
gi|113531414|dbj|BAF03797.1| Os01g0123000 [Oryza sativa
Japonica Group] gi|215741345|dbj|BAG97840.1| unnamed
protein product [Oryza sativa Japonica Group]
Length = 360
Score = 115 bits (288), Expect(2) = 4e-36
Identities = 78/248 (31%), Positives = 113/248 (45%), Gaps = 4/248 (1%)
Frame = +2
Query: 449 TTSHGLWSAINRNFGMISRSRHIQLKGELYSVIKGSMTITEYFSKIKGIADYLLAAGCPI 628
TT+ W AI+ F SR+ I ++ L S KG+M++TEY +K++ IAD L AAG PI
Sbjct: 110 TTAAQAWQAISDMFASKSRAGLINMRLALTSTQKGTMSVTEYVAKMRAIADELAAAGKPI 169
Query: 629 DDITLISCLLHGLGPEFDVVSALISSGAGEISIEETFSLLLVQETKIQHHNTMTQLTFSA 808
D LI+ +++GL FD V + + I+++E +S LL E KI+ LT S
Sbjct: 170 DQDDLIAYIINGLDANFDPVVEALVARVEPITVQEMYSHLLNFENKIRLRQAF--LTAST 227
Query: 809 NYAFGKQPQSNNNSNTYQGRGTNNFXXXXXXXXXXXXXXXKC----ICQICKKPNHSAL* 976
N A +GRG + CQ+C K H A
Sbjct: 228 NAANRNNVTRGGRGGMPRGRGGRGGGGRGGNGGRGNNGGGRGDNRPTCQVCNKRGHVASD 287
Query: 977 CWYRFDHEFVXXXXXXXXXXXXXXXALLAMPESIADPGWYADSGASNHITADLENLSIKS 1156
CW+RFD +V D WY D+GA++HIT+ L+ L+ K
Sbjct: 288 CWHRFDETYVPDEKIGGAATHAYGI----------DTNWYVDTGATDHITSQLDKLTTKE 337
Query: 1157 DYKGKQQL 1180
Y+G Q+
Sbjct: 338 KYQGTDQI 345
Score = 64.3 bits (155), Expect(2) = 4e-36
Identities = 42/87 (48%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Frame = +1
Query: 199 KLNRNNFLLWQSQVLTAVQGNRLEGFLFG-TTPYPYE-NIAIGD-EAGSITLE-ANSAHG 366
KL + N+ LW +QVLTA++G RLEGF+ G TTP P E GD + G T++ AN A
Sbjct: 22 KLTKQNYALWSAQVLTALRGARLEGFISGKTTPPPAEIEKKEGDKKEGEKTIKIANPAVD 81
Query: 367 VWIQQDQLLLNSFMASLSEEIFSQVLG 447
W DQ +L +SLS EI SQV G
Sbjct: 82 EWFATDQQVLGFLFSSLSREILSQVAG 108
>emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis chinensis]
Length = 646
Score = 111 bits (277), Expect(2) = 6e-36
Identities = 70/262 (26%), Positives = 127/262 (48%), Gaps = 19/262 (7%)
Frame = +2
Query: 464 LWSAINRNFGMISRSRHIQLKGELYSVIKGSMTITEYFSKIKGIADYLLAAGCPIDDITL 643
+W+A+ ++ SR+R ++L+ +L + KG +++ +Y +I+ I D+L A G +
Sbjct: 139 IWTALRESYASASRARIMELRLQLQTTRKGGLSVMDYMLRIQHICDHLRAIGESVSIDDQ 198
Query: 644 ISCLLHGLGPEFDVVSALISSGAGEISIEETFSLLLVQETKIQHHNTMTQ--------LT 799
+ +L GLG E++ + A I+S IS++ S L E +++ N++ Q
Sbjct: 199 VMAVLAGLGSEYNPIVASITSRLDSISVQALQSYLETYEKRLEIQNSVEQHIPLQANAAM 258
Query: 800 FSANYAFGKQPQSNNNSNTYQGRGTNNFXXXXXXXXXXXXXXX---------KCICQICK 952
+++N K Q N + + T+NF + CQIC
Sbjct: 259 YNSNRGKRKPYQQNFHHSQTPVTATHNFNHRNSSQGGFRGGHSNKGRANPGSRPQCQICC 318
Query: 953 KPNHSAL*CWYRFDHEFVXXXXXXXXXXXXXXX--ALLAMPESIADPGWYADSGASNHIT 1126
K H A CW+RFD++F AL+A P + + W+ D+GA++H+T
Sbjct: 319 KIGHVATECWHRFDNQFQPKASHSNQFSSSAQDPQALMAAPGLLGETPWFLDTGATHHVT 378
Query: 1127 ADLENLSIKSDYKGKQQLMVGN 1192
+DL NLS+ + + G +++VGN
Sbjct: 379 SDLANLSLHNPFSGDDKVIVGN 400
Score = 68.2 bits (165), Expect(2) = 6e-36
Identities = 41/117 (35%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Frame = +1
Query: 112 STTSVSQISGSQIVKNVLPFSGSSTNLTFKLNRNNFLLWQSQVLTAVQGNRLEGFLFGTT 291
+ T +Q +G + + LP G + LT KL+RNNFL+W++Q+L V N E L GT
Sbjct: 24 ANTMATQTTG---INSNLPTFGQT--LTIKLDRNNFLIWRNQLLNIVVANGYEDILEGTR 78
Query: 292 PYPYENIAIGDEA----GSITLEANSAHGVWIQQDQLLLNSFMASLSEEIFSQVLGH 450
PY+ IA+ D A GS+ L N + +W +Q++L+++ +SL+E++ +Q++ +
Sbjct: 79 SCPYQWIAVTDTASTTHGSVIL--NPEYVLWQRQNRLVMSWIYSSLTEQMMTQIMAY 133
>gb|AAU90262.1| integrase core domain containing protein [Oryza sativa Japonica
Group] gi|108710062|gb|ABF97857.1| retrotransposon
protein, putative, Ty1-copia subclass, expressed [Oryza
sativa Japonica Group]
Length = 1021
Score = 109 bits (273), Expect(2) = 1e-35
Identities = 71/253 (28%), Positives = 117/253 (46%), Gaps = 14/253 (5%)
Frame = +2
Query: 464 LWSAINRNFGMISRSRHIQLKGELYSVIKGSMTITEYFSKIKGIADYLLAAGCPIDDITL 643
+W AI SR+R + + L + +KG +++++Y SK+K +AD + AG P+DD L
Sbjct: 108 VWKAITEMLSSQSRARALNTRLALATTLKGDLSVSDYISKMKVLADEMAFAGKPLDDEEL 167
Query: 644 ISCLLHGLGPEFDVVSALISSGAGEISIEETFSLLLVQETKIQHHNTMTQLTFSANYA-- 817
IS +L GL +++ V + + + +S+ E +S LL +++ + + S N A
Sbjct: 168 ISYVLAGLDDDYEPVVSSLVGKSEVVSLAECYSQLLSFKSRQKLRHAAAHQASSVNAARR 227
Query: 818 ----------FGKQPQSNNNSNTYQGRGTNNFXXXXXXXXXXXXXXXK--CICQICKKPN 961
F + +S N+N GR +NN K +C +C K
Sbjct: 228 GGGKGGGYTPFNRGGRSGGNNN---GRRSNNGGGRGGRGNNNGDRGGKPHPVCHLCGKTG 284
Query: 962 HSAL*CWYRFDHEFVXXXXXXXXXXXXXXXALLAMPESIADPGWYADSGASNHITADLEN 1141
H CWYR+D FV + A D WY D+GA++HIT +L+
Sbjct: 285 HVVADCWYRYDENFV------------PENKIAAAASYGVDTNWYVDTGATDHITGELDK 332
Query: 1142 LSIKSDYKGKQQL 1180
L+ + Y GK Q+
Sbjct: 333 LTTREKYNGKDQI 345
Score = 68.6 bits (166), Expect(2) = 1e-35
Identities = 39/94 (41%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Frame = +1
Query: 166 PFSGSSTNLTFKLNRNNFLLWQSQVLTAVQGNRLEGFLFGTTPYPYENIAIGDEAGSITL 345
PFSG + + KL R NFLLW++Q+L ++G R+EG+L G T P I D G T+
Sbjct: 11 PFSGQA--VAEKLTRTNFLLWKAQILPVIRGARMEGYLTGATQAPLAVIDAKD--GEATV 66
Query: 346 EANS-AHGVWIQQDQLLLNSFMASLSEEIFSQVL 444
+A+ A +WI DQ +L +++LS+EI +QV+
Sbjct: 67 KASKPAFEMWITADQQVLGFLLSTLSKEILTQVI 100
>ref|XP_004967136.1| PREDICTED: uncharacterized protein LOC101762311 [Setaria italica]
Length = 866
Score = 120 bits (300), Expect(2) = 2e-35
Identities = 78/269 (28%), Positives = 125/269 (46%), Gaps = 21/269 (7%)
Frame = +2
Query: 449 TTSHGLWSAINRNFGMISRSRHIQLKGELYSVIKGSMTITEYFSKIKGIADYLLAAGCPI 628
TTS W A+ F SR+R L+ +L + KGS+T EYF+K++ I D L +AG I
Sbjct: 104 TTSAQAWKALGAMFAAQSRARVTNLRMQLATAKKGSLTTAEYFNKMQNIKDELASAGVTI 163
Query: 629 DDITLISCLLHGLGPEFDVVSALISSGAGEISIEETFSLLLVQETKIQHHNTMTQLTFSA 808
+D +++ +L+GL ++ + + +G++S+ E +SLL+ + +++ + Q SA
Sbjct: 164 NDDEVVAHILNGLDFDYHPFVSSMMGRSGDLSLSELYSLLMEYDLRLEMYQGTEQHQSSA 223
Query: 809 NYAF--------------------GKQPQSNN-NSNTYQGRGTNNFXXXXXXXXXXXXXX 925
N A G+Q QSN N + +G N
Sbjct: 224 NIASRGRENRGRSGGRRGGGRTNQGRQMQSNGGNQKFFNAKGNNQ------------QGD 271
Query: 926 XKCICQICKKPNHSAL*CWYRFDHEFVXXXXXXXXXXXXXXXALLAMPESIADPGWYADS 1105
+ CQICKK NH A C++R++ + D WYADS
Sbjct: 272 KRPPCQICKKTNHEAKQCYFRYEEDEQYRGRPNEAYG--------------VDTNWYADS 317
Query: 1106 GASNHITADLENLSIKSDYKGKQQLMVGN 1192
GA+NH+T +LE LS++ Y G+ Q+ N
Sbjct: 318 GATNHVTGELEKLSVRDRYNGRDQVNTAN 346
Score = 57.4 bits (137), Expect(2) = 2e-35
Identities = 31/81 (38%), Positives = 47/81 (58%)
Frame = +1
Query: 199 KLNRNNFLLWQSQVLTAVQGNRLEGFLFGTTPYPYENIAIGDEAGSITLEANSAHGVWIQ 378
KL RNNF+LW+ Q L AV+G + G L GTT P + I + G N H W++
Sbjct: 21 KLTRNNFVLWKIQFLPAVRGAKALGILEGTTAEPPQEIE-AEVDGKKKKIPNPEHDSWVE 79
Query: 379 QDQLLLNSFMASLSEEIFSQV 441
+DQ LL+ + S+S+E+ + +
Sbjct: 80 RDQQLLSYLVNSVSKEVLAGI 100
>gb|ABA94311.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 339
Score = 117 bits (294), Expect(2) = 8e-35
Identities = 79/247 (31%), Positives = 118/247 (47%)
Frame = +2
Query: 452 TSHGLWSAINRNFGMISRSRHIQLKGELYSVIKGSMTITEYFSKIKGIADYLLAAGCPID 631
TS +W+AI + SR+R L+ L + KGS T YFSK+KG+AD L +AG PID
Sbjct: 106 TSAEVWAAITNMYTSQSRARITNLRISLTNSKKGSTTTAAYFSKMKGLADDLASAGKPID 165
Query: 632 DITLISCLLHGLGPEFDVVSALISSGAGEISIEETFSLLLVQETKIQHHNTMTQLTFSAN 811
D L+S +L GL ++ + L+S ++++ + ++ H Q+ SAN
Sbjct: 166 DDELVSYILAGLDIDY---NPLVS------------TVMVSYDNRMDHLQGGGQIQSSAN 210
Query: 812 YAFGKQPQSNNNSNTYQGRGTNNFXXXXXXXXXXXXXXXKCICQICKKPNHSAL*CWYRF 991
AF + NN+N ++GRG N + +CQ+C K H+ + CWYRF
Sbjct: 211 AAFRGR---GNNNNNFRGRG-NGGCGRGNGGRGGGQQGPRPVCQLCGKTGHTVIKCWYRF 266
Query: 992 DHEFVXXXXXXXXXXXXXXXALLAMPESIADPGWYADSGASNHITADLENLSIKSDYKGK 1171
D + A D WY D GA++HIT +L+ LSI+ Y G
Sbjct: 267 DQTY---------QPEEKVAAAATNSAYGVDTNWYVDCGATDHITGELDKLSIREKYNGL 317
Query: 1172 QQLMVGN 1192
Q+ N
Sbjct: 318 DQVHATN 324
Score = 57.8 bits (138), Expect(2) = 8e-35
Identities = 29/84 (34%), Positives = 48/84 (57%)
Frame = +1
Query: 190 LTFKLNRNNFLLWQSQVLTAVQGNRLEGFLFGTTPYPYENIAIGDEAGSITLEANSAHGV 369
+T KL R N++LW++QVL A++G L +L T P + D+ + NS + +
Sbjct: 18 VTVKLTRENYVLWRAQVLPALRGALLTNYLDSTAEEPAKTRTTVDKNDKEIVSNNSEYAM 77
Query: 370 WIQQDQLLLNSFMASLSEEIFSQV 441
W+ QDQ +L + SLS+++ QV
Sbjct: 78 WMAQDQQVLAYLLNSLSKDVLQQV 101
>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1256
Score = 116 bits (291), Expect(2) = 2e-34
Identities = 75/258 (29%), Positives = 120/258 (46%), Gaps = 10/258 (3%)
Frame = +2
Query: 449 TTSHGLWSAINRNFGMISRSRHIQLKGELYSVIKGSMTITEYFSKIKGIADYLLAAGCPI 628
+++ LWS I F +R+R I K L + KG + I EY SK++ +AD L +G P+
Sbjct: 104 SSAASLWSTIEGMFSSATRARSINTKIALTNTKKGDLGIAEYVSKMRVLADELATSGKPV 163
Query: 629 DDITLISCLLHGLGPEFDVVSALISSGAGEISIEETFSLLLVQETKI---QHH--NTMTQ 793
D+ LIS ++ GL +F+ + + + S + +S+ E +S LL E ++ Q H N +
Sbjct: 164 DEEDLISYIIAGLDEDFEPIISSLVSKSEHVSLGEAYSQLLSFEQRMKMRQEHSANLANR 223
Query: 794 LTFSANYAFGK-----QPQSNNNSNTYQGRGTNNFXXXXXXXXXXXXXXXKCICQICKKP 958
N G+ Q Q + +GRG N + CQ+C K
Sbjct: 224 GRGRGNPGRGRNNKQPQQQQRGHGGNSRGRGRGN---NSNQRQGGNGVDYRPKCQLCYKR 280
Query: 959 NHSAL*CWYRFDHEFVXXXXXXXXXXXXXXXALLAMPESIADPGWYADSGASNHITADLE 1138
H+ + CWYR+D +FV D WY D+G ++H+T +LE
Sbjct: 281 GHTVIDCWYRYDEDFVPDEKYAGTTASYG-----------VDSNWYVDTGTTDHVTGELE 329
Query: 1139 NLSIKSDYKGKQQLMVGN 1192
L+I+ YKG+ Q+ N
Sbjct: 330 KLTIRDKYKGQDQVQTAN 347
Score = 57.8 bits (138), Expect(2) = 2e-34
Identities = 29/84 (34%), Positives = 48/84 (57%)
Frame = +1
Query: 190 LTFKLNRNNFLLWQSQVLTAVQGNRLEGFLFGTTPYPYENIAIGDEAGSITLEANSAHGV 369
+T KL++ N+L+W+ QVL ++G RL+ +L G T P I I + + +N A
Sbjct: 18 VTEKLSKGNYLIWKVQVLAVIRGARLDSYLTGATKKPSATIIIKKNEKEVEV-SNPAVDE 76
Query: 370 WIQQDQLLLNSFMASLSEEIFSQV 441
WI DQ +L + ++S ++ SQV
Sbjct: 77 WIANDQQVLGYLLTTMSRDVLSQV 100
>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
Length = 1621
Score = 113 bits (283), Expect(2) = 4e-34
Identities = 72/253 (28%), Positives = 119/253 (47%), Gaps = 10/253 (3%)
Frame = +2
Query: 452 TSHGLWSAINRNFGMISRSRHIQLKGELYSVIKGSMTITEYFSKIKGIADYL-LAAGCPI 628
T+ +WSAI + + +R+R I + L + KG+M+ EYF+K+K + D + A G PI
Sbjct: 191 TAAEVWSAIEQMYSTHTRARAINTRFALTNTKKGNMSTPEYFAKMKSLGDEMATAGGRPI 250
Query: 629 DDITLISCLLHGLGPEFDVVSALISSGAGEISIEETFSLLLVQETKIQHHNTMTQLTFSA 808
D+ LI ++ GLG + V + + + IS+ + +S +L E + + ++T +
Sbjct: 251 DEEELIQYIITGLGEGYSEVVSAVCARVEPISVSDLYSQVLNFEARQAIYRGAQEVTVNV 310
Query: 809 NYAFGKQPQSNNNSNTYQ---------GRGTNNFXXXXXXXXXXXXXXXKCICQICKKPN 961
G NSN Q G G N + ICQ+C K
Sbjct: 311 ANRGGFSHGGRGNSNGGQGGSRGGGGGGHGRGNGGGGRGRGRTPGGVDKRPICQVCFKRG 370
Query: 962 HSAL*CWYRFDHEFVXXXXXXXXXXXXXXXALLAMPESIADPGWYADSGASNHITADLEN 1141
H+A CWYR+D ++V A A+ D WY D+GA++H+T +L+
Sbjct: 371 HTAADCWYRYDEDYV---------PDAKHVAAAAVNSYGVDTNWYIDTGATDHVTGELDK 421
Query: 1142 LSIKSDYKGKQQL 1180
L++K Y G +Q+
Sbjct: 422 LTMKEKYNGGEQI 434
Score = 59.7 bits (143), Expect(2) = 4e-34
Identities = 36/92 (39%), Positives = 50/92 (54%)
Frame = +1
Query: 166 PFSGSSTNLTFKLNRNNFLLWQSQVLTAVQGNRLEGFLFGTTPYPYENIAIGDEAGSITL 345
PF G ++ KL + N LW+ QV AV+G RL+G L G T P IA+ + G+
Sbjct: 98 PFQGHP--ISEKLGKANHALWKVQVSAAVRGARLQGHLTGATKRPPAEIAVTKD-GATKK 154
Query: 346 EANSAHGVWIQQDQLLLNSFMASLSEEIFSQV 441
E N AH W DQ +L ++SL+ E+ QV
Sbjct: 155 EPNPAHEDWEATDQQVLGYLLSSLTREVLMQV 186
>ref|XP_004514187.1| PREDICTED: uncharacterized protein LOC101501674 [Cicer arietinum]
Length = 933
Score = 122 bits (306), Expect(2) = 4e-34
Identities = 83/255 (32%), Positives = 122/255 (47%), Gaps = 8/255 (3%)
Frame = +2
Query: 452 TSHGLWSAINRNFGMISRSRHIQLKGELYSVIKGSMTITEYFSKIKGIADYLLAAGCPID 631
TS LW G +RSR LK E +++ KG M + EY K+K +AD L AG PI
Sbjct: 101 TSKQLWDEAQSLVGAHTRSRVTDLKSEFHNIRKGEMKMEEYLVKMKNLADKLKLAGSPIS 160
Query: 632 DITLISCLLHGLGPEFDVVSALISSGAGEISIEETFSLLLVQETKIQHHNTMTQLTF--S 805
+ LI L+GL E++ + +S ++ + + LL E+++ N++T LT S
Sbjct: 161 NSDLIIQTLNGLDSEYNPMVVKLSDQT-SLTWVDLQAQLLTFESRLDQLNSLTNLTLNAS 219
Query: 806 ANYAFGKQPQSN--NNSNTYQGRGTN----NFXXXXXXXXXXXXXXXKCICQICKKPNHS 967
AN A + N N +N ++G +N NF K CQ+C K H+
Sbjct: 220 ANVANKTDYRGNKFNTNNNWRGSNSNWRGSNF--RGWRGDRGRGRMSKPTCQVCHKAGHT 277
Query: 968 AL*CWYRFDHEFVXXXXXXXXXXXXXXXALLAMPESIADPGWYADSGASNHITADLENLS 1147
A+ C+YRFD + A LA S+ D WY DSGASNH+T +
Sbjct: 278 AVNCYYRFDKSYSNSNYSAGNDRQGAHNAFLASQSSLQDYDWYFDSGASNHVTNQTDKFE 337
Query: 1148 IKSDYKGKQQLMVGN 1192
+D+ GK L+VG+
Sbjct: 338 DLTDHHGKNSLIVGS 352
Score = 50.8 bits (120), Expect(2) = 4e-34
Identities = 33/96 (34%), Positives = 52/96 (54%)
Frame = +1
Query: 157 NVLPFSGSSTNLTFKLNRNNFLLWQSQVLTAVQGNRLEGFLFGTTPYPYENIAIGDEAGS 336
N LPF ++ KL+R+N+ LW+S V++ V+G RL G++ GT P + A D + +
Sbjct: 11 NDLPFV-----VSVKLDRDNYPLWKSLVISIVKGYRLHGYMLGTKECPEKFTASTDSSKN 65
Query: 337 ITLEANSAHGVWIQQDQLLLNSFMASLSEEIFSQVL 444
N A W D LL M S++ E+ +Q+L
Sbjct: 66 ----PNPAFEDWQAHDSQLLGWLMNSMTTEMATQLL 97
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 113 bits (282), Expect(2) = 5e-34
Identities = 72/254 (28%), Positives = 119/254 (46%), Gaps = 11/254 (4%)
Frame = +2
Query: 452 TSHGLWSAINRNFGMISRSRHIQLKGELYSVIKGSMTITEYFSKIKGIADYL-LAAGCPI 628
T+ +WSAI + + +R+R I + L + KG+M+ EYF+K+K + D + A G PI
Sbjct: 105 TAAEVWSAIEQMYSTHTRARAINTRFALTNTKKGNMSTPEYFAKMKSLGDEMATAGGRPI 164
Query: 629 DDITLISCLLHGLGPEFDVVSALISSGAGEISIEETFSLLLVQETKIQHHNTMTQLTFSA 808
D+ LI ++ GLG + V + + + IS+ + +S +L E + + ++T +
Sbjct: 165 DEEELIQYIITGLGEGYSEVVSAVCARVEPISVSDLYSQVLNFEARQAIYRGAQEVTVNV 224
Query: 809 NYAFGKQPQSNNNSNTYQ----------GRGTNNFXXXXXXXXXXXXXXXKCICQICKKP 958
G NSN Q G G N + ICQ+C K
Sbjct: 225 ANRGGFSHGGRGNSNGGQGGSRGGGGGGGHGRGNGGGGHGRGRTPGGVDKRPICQVCFKR 284
Query: 959 NHSAL*CWYRFDHEFVXXXXXXXXXXXXXXXALLAMPESIADPGWYADSGASNHITADLE 1138
H+A CWYR+D ++V A A+ D WY D+GA++H+T +L+
Sbjct: 285 GHTAADCWYRYDEDYV---------PDAKHVAAAAVNSYGVDTNWYIDTGATDHVTGELD 335
Query: 1139 NLSIKSDYKGKQQL 1180
L++K Y G +Q+
Sbjct: 336 KLTMKEKYNGGEQI 349
Score = 59.7 bits (143), Expect(2) = 5e-34
Identities = 36/92 (39%), Positives = 50/92 (54%)
Frame = +1
Query: 166 PFSGSSTNLTFKLNRNNFLLWQSQVLTAVQGNRLEGFLFGTTPYPYENIAIGDEAGSITL 345
PF G ++ KL + N LW+ QV AV+G RL+G L G T P IA+ + G+
Sbjct: 12 PFQGHP--ISEKLGKANHALWKVQVSAAVRGARLQGHLTGATKRPPAEIAVTKD-GATKK 68
Query: 346 EANSAHGVWIQQDQLLLNSFMASLSEEIFSQV 441
E N AH W DQ +L ++SL+ E+ QV
Sbjct: 69 EPNPAHEDWEATDQQVLGYLLSSLTREVLMQV 100
>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108706314|gb|ABF94109.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1247
Score = 100 bits (249), Expect(2) = 3e-33
Identities = 75/261 (28%), Positives = 115/261 (44%), Gaps = 18/261 (6%)
Frame = +2
Query: 452 TSHGLWSAINRNFGMISRSRHIQLKGELYSVIKGSMTITEYFSKIKGIADYLLAAGCPID 631
T+ WS + + ++R+R I + L + KG ++ITEY +K++ + D + AAG +D
Sbjct: 102 TAATAWSMLEEMYTSMTRARFINTRIALSNTKKGDLSITEYVAKMRALGDDMTAAGKVVD 161
Query: 632 DITLISCLLHGLGPEFDVVSALISSGAGEISIEETFSLLLVQETKIQHHNTMTQLTFSAN 811
+ LIS ++ GL ++ V + I + +S E FS LL E Q +N SAN
Sbjct: 162 NEDLISYIIAGLDDTYEPVISSIVGKSEPMSFGEAFSQLLSFE---QCNNLRHGGESSAN 218
Query: 812 YAF---------GKQPQSNNNSNTYQGRGTNNFXXXXXXXXXXXXXXX---------KCI 937
A G Q N+ G G NN +
Sbjct: 219 LANRGCGTTGGNGGQRGRGGNNRGRGGNGGNNSANRGKGGRGNGGFNGGRQGGGVDTRPK 278
Query: 938 CQICKKPNHSAL*CWYRFDHEFVXXXXXXXXXXXXXXXALLAMPESIADPGWYADSGASN 1117
CQ+C K H+ + CWYR+D +FV A A D WY D+GA++
Sbjct: 279 CQLCYKRGHTVINCWYRYDEDFVPDEKY----------AGSAATSYGIDTNWYVDTGATD 328
Query: 1118 HITADLENLSIKSDYKGKQQL 1180
H+T +LE L ++ YKG Q+
Sbjct: 329 HVTGELEKLIVRDHYKGHDQV 349
Score = 69.7 bits (169), Expect(2) = 3e-33
Identities = 38/94 (40%), Positives = 61/94 (64%), Gaps = 2/94 (2%)
Frame = +1
Query: 166 PFSGSSTNLTFKLNRNNFLLWQSQVLTAVQGNRLEGFLFGTTPYPYENIAI-GDEAG-SI 339
PF G++ ++ KL +NN+ LW++QVL +V+G RLEG L GTT P I++ G++ G
Sbjct: 6 PFGGNT--ISEKLAKNNYALWKAQVLASVRGARLEGHLTGTTAAPAITISVPGEKEGDKA 63
Query: 340 TLEANSAHGVWIQQDQLLLNSFMASLSEEIFSQV 441
T AN A+ W+ DQ +L +++LS ++ +QV
Sbjct: 64 TRVANPAYDEWVATDQQILGLLLSTLSRDVLAQV 97
>ref|XP_004958843.1| PREDICTED: uncharacterized protein LOC101772504 [Setaria italica]
Length = 515
Score = 115 bits (288), Expect(2) = 3e-33
Identities = 71/252 (28%), Positives = 117/252 (46%), Gaps = 8/252 (3%)
Frame = +2
Query: 449 TTSHGLWSAINRNFGMISRSRHIQLKGELYSVIKGSMTITEYFSKIKGIADYLLAAGCPI 628
TTS W A+ F SR+R L+ +L + KGS+T YF+K++ I D L +AG +
Sbjct: 103 TTSAEAWKALGVMFAAQSRARVTNLRMQLATAKKGSLTTAAYFNKMQNIKDELASAGVTV 162
Query: 629 DDITLISCLLHGLGPEFDVVSALISSGAGEISIEETFSLLLVQETKIQHHNTMTQLTFSA 808
+D +++ +L+GL ++ + + +G++S+ E +SLL+ + +++ + Q SA
Sbjct: 163 NDDEVVAHILNGLDFDYHPFVSSMMGRSGDLSLSELYSLLMEYDLRLEMYQGTEQHQSSA 222
Query: 809 NYAFGKQPQSNNNSNTYQG--------RGTNNFXXXXXXXXXXXXXXXKCICQICKKPNH 964
N A + + + G NN K CQICKK NH
Sbjct: 223 NVASRGRGNRGRSGGRHSGGRSNRRFPASNNNNQNFSNNQGSNQQSNRKTPCQICKKTNH 282
Query: 965 SAL*CWYRFDHEFVXXXXXXXXXXXXXXXALLAMPESIADPGWYADSGASNHITADLENL 1144
A C++R+D + D WYADSGA+NH+T +LE L
Sbjct: 283 EAKQCYFRYDEDEQYRGRPSEAYG--------------VDTNWYADSGATNHVTGELEKL 328
Query: 1145 SIKSDYKGKQQL 1180
+++ Y G Q+
Sbjct: 329 TVRDCYSGHDQV 340
Score = 54.7 bits (130), Expect(2) = 3e-33
Identities = 29/81 (35%), Positives = 47/81 (58%)
Frame = +1
Query: 199 KLNRNNFLLWQSQVLTAVQGNRLEGFLFGTTPYPYENIAIGDEAGSITLEANSAHGVWIQ 378
KL R+NF+LW++Q L AV+G ++ G L GT P + D G N H W++
Sbjct: 20 KLTRDNFVLWKAQFLPAVRGAKVLGILDGTISEP-RPVIEADVDGKKKQIPNPEHDSWVE 78
Query: 379 QDQLLLNSFMASLSEEIFSQV 441
+DQ LL+ + S+S+E+ + +
Sbjct: 79 KDQQLLSYLVNSVSKEVLAGI 99
>emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]
Length = 1825
Score = 115 bits (289), Expect(2) = 9e-33
Identities = 70/248 (28%), Positives = 115/248 (46%), Gaps = 5/248 (2%)
Frame = +2
Query: 452 TSHGLWSAINRNFGMISRSRHIQLKGELYSVIKGSMTITEYFSKIKGIADYLLAAGCPID 631
T+ W ++ F +R+R + ++ L ++ KG+ +I+EY K+K +AD + AAG P+D
Sbjct: 243 TAAEAWKTLDDMFTSRTRARSLNVRLALTTLQKGNSSISEYIGKMKTLADEVAAAGKPLD 302
Query: 632 DITLISCLLHGLGPEFDVVSALISSGAGEISIEETFSLLLVQETKIQHHNTMTQLTFSAN 811
D LI+ +L+GL +FD V + I +++ E +S LL E ++ +
Sbjct: 303 DEELIAYILNGLDEDFDSVVSTIVGRVEPVTVAEVYSQLLSFENRLAMRQAQATANMANR 362
Query: 812 YAFGKQPQSNNNSNTYQGRGTNNFXXXXXXXXXXXXXXXKC-----ICQICKKPNHSAL* 976
G +N +GRG + +CQ+C K H A
Sbjct: 363 GGRGGGGSRGGGANPGRGRGATRGRGAAPGRGRGNNQQQRSYDNRPLCQVCYKRGHVAAD 422
Query: 977 CWYRFDHEFVXXXXXXXXXXXXXXXALLAMPESIADPGWYADSGASNHITADLENLSIKS 1156
CW+RFD +FV A+ D WY D+GA++HIT++LE L+ +
Sbjct: 423 CWHRFDEDFV----------PDDKLVAAAIHTHARDSNWYVDTGATDHITSELEKLTARD 472
Query: 1157 DYKGKQQL 1180
YKG Q+
Sbjct: 473 VYKGHDQI 480
Score = 52.8 bits (125), Expect(2) = 9e-33
Identities = 37/112 (33%), Positives = 53/112 (47%)
Frame = +1
Query: 106 SGSTTSVSQISGSQIVKNVLPFSGSSTNLTFKLNRNNFLLWQSQVLTAVQGNRLEGFLFG 285
S +T ++ S S N L +T KL++ N LW +QVLTA++G RLEG + G
Sbjct: 132 SEKSTQMASTSNSAASSNPL----IGVQVTEKLSKANHGLWVAQVLTAIRGARLEGHING 187
Query: 286 TTPYPYENIAIGDEAGSITLEANSAHGVWIQQDQLLLNSFMASLSEEIFSQV 441
P P I + G +N + W DQ +L +SL+ E QV
Sbjct: 188 KNPAPPAEITKTVD-GKEVKTSNPNYDEWFAADQQILGFLFSSLTRETLLQV 238
>gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
sativa Japonica Group]
gi|14718304|gb|AAK72882.1|AC091123_1 putative gag-pol
protein [Oryza sativa Japonica Group]
Length = 1219
Score = 106 bits (265), Expect(2) = 2e-32
Identities = 71/248 (28%), Positives = 108/248 (43%), Gaps = 5/248 (2%)
Frame = +2
Query: 452 TSHGLWSAINRNFGMISRSRHIQLKGELYSVIKGSMTITEYFSKIKGIADYLLAAGCPID 631
T+ W I F S + I ++ L + KG T+TEY SK++ + D + A G PID
Sbjct: 109 TAAAAWKTIENTFSTRSHAGAINVRLALTTTQKGQSTVTEYVSKMRALGDEIAATGKPID 168
Query: 632 DITLISCLLHGLGPEFD-VVSALISSGAGEISIEETFSLLLVQETKIQHHNTMTQLTFSA 808
D L++ +++GL EFD VV ALI+ A +++ E +S LL E +++ S
Sbjct: 169 DEELVAYIINGLDSEFDPVVEALIAKNA-SVTVAEVYSQLLGFENRVKIRTACA--ATSG 225
Query: 809 NYAFGKQPQSNNN----SNTYQGRGTNNFXXXXXXXXXXXXXXXKCICQICKKPNHSAL* 976
N G Q + N G G+ + CQ+C K H
Sbjct: 226 NRGSGNQGRGGGNPRGRGTGRGGGGSGGRGGGHGRGNGRGGTDNRPTCQVCHKKGHVVAD 285
Query: 977 CWYRFDHEFVXXXXXXXXXXXXXXXALLAMPESIADPGWYADSGASNHITADLENLSIKS 1156
CW+R+D +V A D WY D+ A++HIT L+ L+ +
Sbjct: 286 CWHRYDENYVPDEKLGG----------AATHAYGVDTNWYVDTEATDHITGQLDKLTTRE 335
Query: 1157 DYKGKQQL 1180
YKG Q+
Sbjct: 336 KYKGTDQI 343
Score = 60.8 bits (146), Expect(2) = 2e-32
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +1
Query: 199 KLNRNNFLLWQSQVLTAVQGNRLEGFLFGTTPYPYENIAIGD-EAGSITLEA-NSAHGVW 372
KL + N LW +QVLTA++G RLEG + GT+ P + + E G T+ N A+G W
Sbjct: 22 KLTKQNHSLWSAQVLTALRGARLEGHVLGTSVPPEAELEQKEGEKGEKTVRVPNPAYGEW 81
Query: 373 IQQDQLLLNSFMASLSEEIFSQVLG 447
DQ +L +SL+ EI SQV G
Sbjct: 82 FATDQQVLGFLFSSLTREIRSQVAG 106