BLASTX nr result
ID: Cocculus23_contig00027591
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00027591
(1747 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 142 4e-31
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 127 1e-26
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 126 4e-26
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 125 5e-26
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 124 1e-25
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ... 123 2e-25
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 123 3e-25
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ... 122 5e-25
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 121 1e-24
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 120 1e-24
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali... 119 3e-24
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 119 3e-24
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 118 7e-24
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 117 2e-23
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 116 4e-23
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA... 114 2e-22
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 113 2e-22
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 113 2e-22
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 109 4e-21
ref|XP_006579104.1| PREDICTED: uncharacterized protein LOC102661... 108 1e-20
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 142 bits (359), Expect = 4e-31
Identities = 91/313 (29%), Positives = 152/313 (48%), Gaps = 12/313 (3%)
Frame = -1
Query: 928 FGHNERTCLKSAGILTYIIFADDVLVFIYLRVSYLEEFNKLLRDIERKTGLAMNPEKSRI 749
FG++ + K+ G LT++ FADD++V ++ +E K+ + + +GL ++ EKS +
Sbjct: 687 FGYHPKC--KTMG-LTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTV 743
Query: 748 VYSK-STVDRDLLSGSLGIREPSFPLKYLGLPLVSRKRFVNECLPIF*IRCIIIFMDRKL 572
+ S R+ ++ P++YLGLPL++++ +CLP+ + RK
Sbjct: 744 YLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPL-------LEQVRKR 796
Query: 571 VVSLRHLEWFY*SMLCKLFICIGKSC------FAIPSSILKKAESLMNKFL----NFNSR 422
+ S Y L + + C F +P +++ E + + FL NS
Sbjct: 797 IGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSN 856
Query: 421 IISMSWENVCKPREEGGLGLRRLKEVSLAAGLKLAWWVASKKDLLWIKWIHSQYIRSDTY 242
+SW VCKP++EGGLGLR LKE + LKL W + S + LW+KW+ +R+ ++
Sbjct: 857 KAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASF 916
Query: 241 W-VSQAHMSSSWIQKRLMKIRRVLEANVSYLIGKDLYTKVWLDPWSPLGVIARDCGKNAR 65
W V Q SWI K+L+K R V + +G T W D WS LG + G
Sbjct: 917 WEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQLLERTGDRGL 976
Query: 64 RGSDLRRDATIDD 26
+ R T+++
Sbjct: 977 IDLGISRRMTVEE 989
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 127 bits (320), Expect = 1e-26
Identities = 86/299 (28%), Positives = 141/299 (47%), Gaps = 12/299 (4%)
Frame = -1
Query: 886 LTYIIFADDVLVFIYLRVSYLEEFNKLLRDIERKTGLAMNPEKSRIVYSK-STVDRDLLS 710
LT++ FADD+++ + +E ++ + +GL ++ EKS I + S+ R L
Sbjct: 251 LTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISMEKSTIFSAGLSSTSRAQLH 310
Query: 709 GSLGIREPSFPLKYLGLPLVSRKRFVNECLPIF*IRCIIIFMDRKLVVSLRHLEWFY*SM 530
P++YLGLPLV+++ + P+ I RK + S +
Sbjct: 311 THFPFEVGELPIRYLGLPLVTKRLSSVDYAPL-------IEQIRKRIGSWSSRFLSFAGR 363
Query: 529 LCKLFICIGKSC------FAIPSSILKKAESLMNKFL----NFNSRIISMSWENVCKPRE 380
+ I SC F +P + +++ E L + FL N NS+ +SW VCKP+
Sbjct: 364 FNLISSIIWSSCNFWLSAFQLPRACIQEIEKLCSSFLWSGTNLNSKKAKISWNQVCKPKS 423
Query: 379 EGGLGLRRLKEVSLAAGLKLAWWVASKKDLLWIKWIHSQYIRSDTYWVSQAHMS-SSWIQ 203
EGGLGLR LKE + LKL W + S D LW+KW+ ++ + +W+ + + + SWI
Sbjct: 424 EGGLGLRSLKEANDVCCLKLVWRIISHGDSLWVKWVEHNLLKREIFWIVKENANLGSWIW 483
Query: 202 KRLMKIRRVLEANVSYLIGKDLYTKVWLDPWSPLGVIARDCGKNARRGSDLRRDATIDD 26
K+++K R V + +G T W D WS LG + G + R ++ D
Sbjct: 484 KKILKYRGVAKRFCKAEVGNGESTSFWFDDWSLLGRLIDVAGIRGTIDMGISRTMSVAD 542
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 126 bits (316), Expect = 4e-26
Identities = 81/293 (27%), Positives = 147/293 (50%), Gaps = 8/293 (2%)
Frame = -1
Query: 886 LTYIIFADDVLVFIYLRVSYLEEFNKLLRDIERKTGLAMNPEKSRIVYSKSTVD--RDLL 713
LT++ FADD+++ +V ++ +++ +++GL +N EK+ + Y+ D R ++
Sbjct: 103 LTHLCFADDLMILTDGKVRSVDGIVEVMNLFAKRSGLQINMEKTTL-YTAGVSDHNRYMM 161
Query: 712 SGSLGIREPSFPLKYLGLPLVSRKRFVNECLPIF*-IRCIIIFMDRKLVVSLRHLEWFY* 536
P++YLGLPLV+++ + P+F IR I + + L
Sbjct: 162 ISRYPFGLGQLPVRYLGLPLVTKRLTKEDLSPLFEQIRNRIGTWTSRYLSFAGRLNLI-- 219
Query: 535 SMLCKLFICIGKSCFAIPSSILKKAESLMNKFL----NFNSRIISMSWENVCKPREEGGL 368
S + + S F +PS+ LK+ S+ + FL + R +SW+++CKP++EGGL
Sbjct: 220 SSVLWSTMNFWMSAFRLPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGGL 279
Query: 367 GLRRLKEVSLAAGLKLAWWVASKKDLLWIKWIHSQYIRSDTYWVSQAHMS-SSWIQKRLM 191
GLR L E ++ + LKL W V S D LW+KW ++ +++W + S SW+ K+++
Sbjct: 280 GLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLTPNSSLGSWMWKKML 339
Query: 190 KIRRVLEANVSYLIGKDLYTKVWLDPWSPLGVIARDCGKNARRGSDLRRDATI 32
K R + + T W D WS +G + G+ + + R+ T+
Sbjct: 340 KYRETAKPFSRVEVNNGARTSFWFDNWSGMGHLMDVTGQRGQIDLGISRNKTV 392
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 125 bits (315), Expect = 5e-26
Identities = 89/302 (29%), Positives = 149/302 (49%), Gaps = 9/302 (2%)
Frame = -1
Query: 886 LTYIIFADDVLVFIYLRVSYLEEFNKLLRDIERKTGLAMNPEKSRIVYSKSTVDRDLLSG 707
+++++FADDV++F + S L + L D +GL MN K+++ ++ +
Sbjct: 589 ISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESDSMA 648
Query: 706 SLGIREPSFPLKYLGLPLVSRKRFVNECLPIF*IRCIIIFMDRKLV--VSLRHLEWFY*S 533
S G + S P++YLGLPL+SRK + E P+ I I + +V +S S
Sbjct: 649 SYGFKLGSLPVRYLGLPLMSRKLTIAEYAPL--IEKITARFNSWVVRLLSFAGRVQLLAS 706
Query: 532 MLCKLFICIGKSCFAIPSSILKKAESLMNKFLNFNSR-----IISMSWENVCKPREEGGL 368
++ + + S F +P +KK ESL ++FL ++SR I ++W VC P+ EGG+
Sbjct: 707 VISGI-VNFWISSFILPLGCIKKIESLCSRFL-WSSRIDKKGIAKVAWSQVCLPKAEGGI 764
Query: 367 GLRRLKEVSLAAGLKLAWWVASKKDLLWIKWIHSQYI--RSDTYWVSQAHMSSSWIQKRL 194
GLRR + L++ W + S LW+ W H Q+ +S ++W SW K L
Sbjct: 765 GLRRFAVSNRTLYLRMIWLLFSNSGSLWVAW-HKQHSLGKSTSFWNQPEKPHDSWNWKCL 823
Query: 193 MKIRRVLEANVSYLIGKDLYTKVWLDPWSPLGVIARDCGKNARRGSDLRRDATIDDLSKC 14
+++R V E + +G W D W+P G + + G R + +A I D+ C
Sbjct: 824 LRLRVVAERFIRCNVGNGRDASFWFDNWTPFGPLIKFLGNEGPRDLRVHLNAKISDV--C 881
Query: 13 SS 8
+S
Sbjct: 882 TS 883
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 124 bits (311), Expect = 1e-25
Identities = 85/295 (28%), Positives = 137/295 (46%), Gaps = 6/295 (2%)
Frame = -1
Query: 886 LTYIIFADDVLVFIYLRVSYLEEFNKLLRDIERKTGLAMNPEKSRIVYSKSTVDRDLLSG 707
++ + FADD+++F + S L +L + +GL MN EKS VY+ D D
Sbjct: 691 ISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSA-VYTAGLEDTDKEDT 749
Query: 706 -SLGIREPSFPLKYLGLPLVSRK-RFVNECLPIF*IRCIIIFMDRKLVVSLRHLEWFY*S 533
+ G +FP +YLGLPL+ RK R + I I K + L+ S
Sbjct: 750 LAFGFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLI--S 807
Query: 532 MLCKLFICIGKSCFAIPSSILKKAESLMNKFLNFNSRI----ISMSWENVCKPREEGGLG 365
+ + S F +P LK E + N+FL N I +SW+N C P+ EGGLG
Sbjct: 808 SVIYSTVNFWLSSFILPKCCLKTIEQMCNRFLWGNDITRRGDIKVSWQNSCLPKAEGGLG 867
Query: 364 LRRLKEVSLAAGLKLAWWVASKKDLLWIKWIHSQYIRSDTYWVSQAHMSSSWIQKRLMKI 185
LR + L+L W + +++D LW+ W H+ +R +W ++A SWI K ++ +
Sbjct: 868 LRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGL 927
Query: 184 RRVLEANVSYLIGKDLYTKVWLDPWSPLGVIARDCGKNARRGSDLRRDATIDDLS 20
R + + + +G W D WS LG + G + + + + A + + S
Sbjct: 928 RPLAKRFLRGAVGNGQLLSYWYDHWSNLGPLIEAIGASGPQLTGIHESAVVTEAS 982
>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
Length = 1115
Score = 123 bits (309), Expect = 2e-25
Identities = 81/293 (27%), Positives = 147/293 (50%), Gaps = 8/293 (2%)
Frame = -1
Query: 886 LTYIIFADDVLVFIYLRVSYLEEFNKLLRDIERKTGLAMNPEKSRIVYSKSTVD--RDLL 713
LT++ FADD+++ +V ++ +++ +++GL +N EK+ + Y+ D R ++
Sbjct: 615 LTHLCFADDLMILTDGKVRSVDGIVEVMNLFAKRSGLKINMEKTTL-YTAGVSDHNRHMM 673
Query: 712 SGSLGIREPSFPLKYLGLPLVSRKRFVNECLPIF*-IRCIIIFMDRKLVVSLRHLEWFY* 536
P++YLGLPLV+++ + P+F IR I + + L
Sbjct: 674 ISRYPFGLAQLPVRYLGLPLVTKRLTKEDLSPLFEQIRNRIGTWTSRYLSFAGRLNLI-- 731
Query: 535 SMLCKLFICIGKSCFAIPSSILKKAESLMNKFL----NFNSRIISMSWENVCKPREEGGL 368
S + + S F +PS+ LK+ S+ + FL N R +SW+++CKP++ GGL
Sbjct: 732 SSVLWSTMNFWMSAFRLPSACLKEINSICSAFLWSGPELNRRKAKVSWDDICKPKQ-GGL 790
Query: 367 GLRRLKEVSLAAGLKLAWWVASKKDLLWIKWIHSQYIRSDTYWVSQAHMS-SSWIQKRLM 191
GLR L E ++ + LKL W V S D LW+KW ++ +++W + + S SW+ K+++
Sbjct: 791 GLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLKPNSSLGSWMWKKML 850
Query: 190 KIRRVLEANVSYLIGKDLYTKVWLDPWSPLGVIARDCGKNARRGSDLRRDATI 32
K R + + T W D WS +G + G+ + + R+ T+
Sbjct: 851 KYRETAKPFSRVEVNNGARTSFWFDNWSGMGHLMDVTGQRGQIDLGISRNKTV 903
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 123 bits (308), Expect = 3e-25
Identities = 84/310 (27%), Positives = 150/310 (48%), Gaps = 11/310 (3%)
Frame = -1
Query: 928 FGHNERTCLKSAGILTYIIFADDVLVFIYLRVSYLEEFNKLLRDIERKTGLAMNPEKSRI 749
FG++ R K+ G LT++ FADD+++ ++ ++ K+L K GL + EK+ +
Sbjct: 408 FGYHPRC--KTLG-LTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTL 464
Query: 748 VYSK-STVDRDLLSGSLGIREPSFPLKYLGLPLVSRKRFVNECLPIF*I--RCIIIFMDR 578
+ S R L+S P++YLGLPLV+++ ++ P+ R I ++ R
Sbjct: 465 YLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSR 524
Query: 577 KLVVSLRHLEWFY*SMLCKLFICIGK---SCFAIPSSILKKAESLMNKFL----NFNSRI 419
L + R S++ + I + F +P + + + + L N +
Sbjct: 525 YLSFAGRL------SLINSVLWSITNFWMNAFRLPRECINEINRISSALLWSGPELNPKK 578
Query: 418 ISMSWENVCKPREEGGLGLRRLKEVSLAAGLKLAWWVASKKDLLWIKWIHSQYIRSDTYW 239
+SW+ +CKP++EGGLGL+ L+E + + LKL W + S +D LW+KW ++ +++W
Sbjct: 579 AKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFW 638
Query: 238 VSQAHMS-SSWIQKRLMKIRRVLEANVSYLIGKDLYTKVWLDPWSPLGVIARDCGKNARR 62
H + SWI +RL+K R V ++ + + T W D WS G + G
Sbjct: 639 SIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFDNWSEKGPLINLTGARGAI 698
Query: 61 GSDLRRDATI 32
+ R T+
Sbjct: 699 DMGISRHMTL 708
>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 489
Score = 122 bits (306), Expect = 5e-25
Identities = 84/313 (26%), Positives = 152/313 (48%), Gaps = 12/313 (3%)
Frame = -1
Query: 928 FGHNERTCLKSAGILTYIIFADDVLVFIYLRVSYLEEFNKLLRDIERKTGLAMNPEKSRI 749
FG++ R K G LT++ FADD++V +V +E ++ + +GL ++ EKS +
Sbjct: 69 FGYHPRC--KQMG-LTHLSFADDLMVLSDGKVRSIEGIVEVFETFAKCSGLRISMEKSTV 125
Query: 748 VYSK-STVDRDLLSGSLGIREPSFPLKYLGLPLVSRKRFVNECLPIF*IRCIIIFMDRKL 572
++ S + + P++YLGLPLV+++ + LP+ I +K
Sbjct: 126 YFAGLSHTSPQEVMAHFPFAVGTLPVRYLGLPLVTKQLSSTDYLPL-------IEHIKKK 178
Query: 571 VVSLRHLEWFY*SMLCKLFICIGKSC------FAIPSSILKKAESLMNKFL----NFNSR 422
+ S Y L + + C F +P +++ + + + +L + N+
Sbjct: 179 IGSWSARFLSYAGRLNLISSVLWSICNFWMGAFRLPRECIREIDKMCSAYLWSGGDLNTS 238
Query: 421 IISMSWENVCKPREEGGLGLRRLKEVSLAAGLKLAWWVASKKDLLWIKWIHSQYIRSDTY 242
++W +VCKP++EGGLGLR LKE + + LKL W + S D LW+KWIH+ ++ ++
Sbjct: 239 KAKIAWTDVCKPKDEGGLGLRSLKEANDVSCLKLIWRIISHADSLWVKWIHATLLKQVSF 298
Query: 241 WVSQAHMS-SSWIQKRLMKIRRVLEANVSYLIGKDLYTKVWLDPWSPLGVIARDCGKNAR 65
W + + S SW+ K+++K R + +T W D WS +G + G
Sbjct: 299 WAVRENTSLGSWMWKKVLKFRDAAIQLCKAEVNNGAHTFFWYDNWSDMGRLIDIAGDRGV 358
Query: 64 RGSDLRRDATIDD 26
+++ AT+ D
Sbjct: 359 IDMGIKKHATMAD 371
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 121 bits (303), Expect = 1e-24
Identities = 81/285 (28%), Positives = 134/285 (47%), Gaps = 15/285 (5%)
Frame = -1
Query: 886 LTYIIFADDVLVFIYLRVSYLEEFNKLLRDIERKTGLAMNPEKSRIVYSKSTVDRDLLSG 707
+++++FADDV++F L + L D +GL +N +KS + + +
Sbjct: 692 ISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLNQLESNANA 751
Query: 706 SLGIREPSFPLKYLGLPLVSRKRFVNECLPIF*---------IRCIIIFMDRKLVVSLRH 554
+ G + P++YLGLPL++RK + E P+ + + F R ++S
Sbjct: 752 AYGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLIS--- 808
Query: 553 LEWFY*SMLCKLFICIG--KSCFAIPSSILKKAESLMNKFL---NFN-SRIISMSWENVC 392
+F I S F +P +K+ ESL ++FL N ++ I +SW +C
Sbjct: 809 ---------SVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALC 859
Query: 391 KPREEGGLGLRRLKEVSLAAGLKLAWWVASKKDLLWIKWIHSQYIRSDTYWVSQAHMSSS 212
P+ EGGLGLRRL E + ++L W + KD LW W H ++ ++W + S S
Sbjct: 860 LPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSDS 919
Query: 211 WIQKRLMKIRRVLEANVSYLIGKDLYTKVWLDPWSPLGVIARDCG 77
W KRL+ +R + + +G L W D W+ LG + R G
Sbjct: 920 WTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNWTSLGPLFRIIG 964
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 120 bits (302), Expect = 1e-24
Identities = 79/289 (27%), Positives = 148/289 (51%), Gaps = 10/289 (3%)
Frame = -1
Query: 886 LTYIIFADDVLVFIYLRVSYLEEFNKLLRDIERKTGLAMNPEKSRIVYSK-STVDRDLLS 710
LT++ FADD++VFI + +E + ++ K+GL ++ EKS + + S ++R+ +
Sbjct: 271 LTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLYLAGVSELNRNNIL 330
Query: 709 GSLGIREPSFPLKYLGLPLVSRKRFVNECLPIF*-IRCIIIFMDRKLVVSLRHLEWFY*S 533
+ P++YLGLPL++++ + P+ +R I + + L +
Sbjct: 331 SAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRL-----A 385
Query: 532 MLCKLFICIGK---SCFAIPSSILKKAESLMNKFL----NFNSRIISMSWENVCKPREEG 374
++ + + + S + +P+ +K+ E L + FL N + ++W ++CK ++EG
Sbjct: 386 LINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEG 445
Query: 373 GLGLRRLKEVSLAAGLKLAWWVASKKDLLWIKWIHSQYIRSDTYWVSQAHMS-SSWIQKR 197
GLG++ L E + + LKL W + S++ LW+ W+ + IR ++W + S SW+ K+
Sbjct: 446 GLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKK 505
Query: 196 LMKIRRVLEANVSYLIGKDLYTKVWLDPWSPLGVIARDCGKNARRGSDL 50
L+K R V ++ I T W D WS LG + NARR D+
Sbjct: 506 LLKYRDVAKSMCKVEIKSGSSTSFWYDNWSQLGQLVD--VTNARRTIDM 552
>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 119 bits (299), Expect = 3e-24
Identities = 87/312 (27%), Positives = 146/312 (46%), Gaps = 13/312 (4%)
Frame = -1
Query: 928 FGHNERTCLKSAGILTYIIFADDVLVFIYLRVSYLEEFNKLLRDIERKTGLAMNPEKSRI 749
FG++ R K G LT++ FADD++V +V +E + + + L ++ EKS +
Sbjct: 17 FGYHPRC--KQIG-LTHLSFADDLMVLSDGKVRSIEGIVDVFDTFAKCSDLKISMEKSTV 73
Query: 748 VYSK-STVDRDLLSGSLGIREPSFPLKYLGLPLVSRKRFVNECLPIF*IRCIIIFMDRKL 572
+ S R + + P++YLGLPLV+++ + LP+ I + +K+
Sbjct: 74 YLAGLSHTTRQEVIDRFSFAVGTLPVRYLGLPLVTKQFSSTDYLPL------IDHIKQKI 127
Query: 571 VV-SLRHLEWFY*SMLCKLFICIGKSC------FAIPSSILKKAESLMNKFL----NFNS 425
S R L Y L + + C F +P +++ + + + +L N+
Sbjct: 128 CSWSARFLS--YTGRLNLISSILWSICNFWMGAFRLPRDCIREIDKMCSAYLWSGGELNT 185
Query: 424 RIISMSWENVCKPREEGGLGLRRLKEVSLAAGLKLAWWVASKKDLLWIKWIHSQYIRSDT 245
++W VCKP+EEGGLGLR LKE + LKL W + S D LW+KWI S ++
Sbjct: 186 SKAKIAWAFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVF 245
Query: 244 YWVSQAHMS-SSWIQKRLMKIRRVLEANVSYLIGKDLYTKVWLDPWSPLGVIARDCGKNA 68
+W + + S SW+ ++++K R + I T W D WS LG + G
Sbjct: 246 FWAVRENTSLGSWMWRKILKFRDIARTLCKVEINNGAQTSFWYDDWSDLGRLIESAGDRG 305
Query: 67 RRGSDLRRDATI 32
+ + AT+
Sbjct: 306 AIDLGINKHATV 317
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 119 bits (299), Expect = 3e-24
Identities = 80/295 (27%), Positives = 146/295 (49%), Gaps = 7/295 (2%)
Frame = -1
Query: 886 LTYIIFADDVLVFIYLRVSYLEEFNKLLRDIERKTGLAMNPEKSRIVYSKSTVD-RDLLS 710
LT++ FADD++VF ++ + + L ++ EKS I + + + + +
Sbjct: 845 LTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSIL 904
Query: 709 GSLGIREPSFPLKYLGLPLVSRKRFVNECLPIF*-IRCIIIFMDRKLVVSLRHLEWFY*S 533
+ P+KYLGLPL++++ ++ LP+ IR I + + L+ S
Sbjct: 905 QQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIK-S 963
Query: 532 MLCKLFICIGKSCFAIPSSILKKAESLMNKFL----NFNSRIISMSWENVCKPREEGGLG 365
+L + S F +P + L++ E + + FL + N++ ++W VCK +EEGGLG
Sbjct: 964 VLSSI-TNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLG 1022
Query: 364 LRRLKEVSLAAGLKLAWWVASKKDLLWIKWIHSQYIRSDTYW-VSQAHMSSSWIQKRLMK 188
L+ LKE + + LKL W + S +D LW+KW++ IR +T+W V + SW+ ++++K
Sbjct: 1023 LKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILK 1082
Query: 187 IRRVLEANVSYLIGKDLYTKVWLDPWSPLGVIARDCGKNARRGSDLRRDATIDDL 23
R + +T W D W PLG + + G + +AT+ ++
Sbjct: 1083 QRDKARLFHRMEVRSGTFTSFWHDHWCPLGRLHQHMGSRGTIDLGIPNNATVAEV 1137
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 118 bits (296), Expect = 7e-24
Identities = 76/272 (27%), Positives = 137/272 (50%), Gaps = 9/272 (3%)
Frame = -1
Query: 886 LTYIIFADDVLVFIYLRVSYLEEFNKLLRDIERKTGLAMNPEKSRIVYSK-STVDRDLLS 710
LT++ FADD++VF+ +E + ++ ++GL ++ EKS I + S DR
Sbjct: 995 LTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTL 1054
Query: 709 GSLGIREPSFPLKYLGLPLVSRKRFVNECLPIF*IRCIIIFMDRKLVVSLRHLEWFY*SM 530
S P++YLGLPL++++ + P+ I + + SL + ++
Sbjct: 1055 SSFPFANGQLPVRYLGLPLLTKQMTTADYSPL--IEAVKTKISSWTARSLSYAGRL--AL 1110
Query: 529 LCKLFICIGK---SCFAIPSSILKKAESLMNKFL----NFNSRIISMSWENVCKPREEGG 371
L + + I S + +P+ +++ E L + FL N + ++W ++C+P++EGG
Sbjct: 1111 LNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGG 1170
Query: 370 LGLRRLKEVSLAAGLKLAWWVASKKDLLWIKWIHSQYIRSDTYWVSQAHMS-SSWIQKRL 194
LG++ L E + + LKL W + S + LW+ WI + IR T+W + S SW+ K+L
Sbjct: 1171 LGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIWTFIIRKGTFWSANERSSLGSWMWKKL 1230
Query: 193 MKIRRVLEANVSYLIGKDLYTKVWLDPWSPLG 98
+K R + ++ + T W D WS LG
Sbjct: 1231 LKYRELAKSMHKVEVRNGSSTSFWYDHWSHLG 1262
>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 117 bits (292), Expect = 2e-23
Identities = 77/289 (26%), Positives = 146/289 (50%), Gaps = 10/289 (3%)
Frame = -1
Query: 886 LTYIIFADDVLVFIYLRVSYLEEFNKLLRDIERKTGLAMNPEKSRIVYSK-STVDRDLLS 710
LT++ FADD++VFI + +E + +D K+GL ++ EKS + ++ S ++R+ +
Sbjct: 840 LTHLCFADDLMVFIDGQQRSVEGVINIFKDFAGKSGLHISLEKSTLYLAEVSELNRNNIL 899
Query: 709 GSLGIREPSFPLKYLGLPLVSRKRFVNECLPIF*-IRCIIIFMDRKLVVSLRHLEWFY*S 533
+ P++YLG PL++++ + P+ +R I + + L +
Sbjct: 900 SAFPFASGQLPVRYLGFPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRL-----A 954
Query: 532 MLCKLFICIGK---SCFAIPSSILKKAESLMNKFL----NFNSRIISMSWENVCKPREEG 374
++ + + + S + +P+ +K+ E L + FL N + ++W ++CK ++EG
Sbjct: 955 LINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEG 1014
Query: 373 GLGLRRLKEVSLAAGLKLAWWVASKKDLLWIKWIHSQYIRSDTYWVSQAHMS-SSWIQKR 197
GLG++ L E + + LKL W + S++ LW+ W+ + IR ++W + S SW+ K+
Sbjct: 1015 GLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKK 1074
Query: 196 LMKIRRVLEANVSYLIGKDLYTKVWLDPWSPLGVIARDCGKNARRGSDL 50
L+ R V ++ I T W D WS L + NARR D+
Sbjct: 1075 LLNYRDVAKSMCKVEIKSGSSTSFWYDNWSQLRQLVD--VTNARRTIDM 1121
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 116 bits (290), Expect = 4e-23
Identities = 80/300 (26%), Positives = 147/300 (49%), Gaps = 13/300 (4%)
Frame = -1
Query: 886 LTYIIFADDVLVFIYLRVSYLEEFNKLLRDIERKTGLAMNPEKSRIVYSK-STVDRDLLS 710
LT++ FADD++V + +E ++ + +++GL ++ EKS + + S + + ++
Sbjct: 345 LTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLYMAGVSPIIKQEIA 404
Query: 709 GSLGIREPSFPLKYLGLPLVSRKRFVNECLPIF*I--RCIIIFMDRKLVVS-----LRHL 551
P++YLGLPLV+++ + P+ + I + R + ++ +
Sbjct: 405 AKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLIKSV 464
Query: 550 EWFY*SMLCKLFICIGKSCFAIPSSILKKAESLMNKFLNFNSRIIS----MSWENVCKPR 383
W +C ++ + F +P +++ + L + FL S + S +SW+ VCKP+
Sbjct: 465 LW----SICNFWL----AAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPK 516
Query: 382 EEGGLGLRRLKEVSLAAGLKLAWWVASKKDLLWIKWIHSQYIRSDTYW-VSQAHMSSSWI 206
EGGLGLR LKE + + LKL W + S + LW KW+ IR + W + Q+ SWI
Sbjct: 517 AEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWI 576
Query: 205 QKRLMKIRRVLEANVSYLIGKDLYTKVWLDPWSPLGVIARDCGKNARRGSDLRRDATIDD 26
++++KIR V ++ +G W D WS G + G + R+A++ D
Sbjct: 577 WRKILKIRDVAKSFSRVEVGNGESASFWYDHWSAHGRLIDTVGDKGTIDLGIPREASVAD 636
>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1|
AT4g02490 [Arabidopsis thaliana]
Length = 657
Score = 114 bits (284), Expect = 2e-22
Identities = 77/275 (28%), Positives = 132/275 (48%), Gaps = 9/275 (3%)
Frame = -1
Query: 895 AGILTYIIFADDVLVFIYLRVSYLEEFNKLLRDIERKTGLAMNPEKSRIVYSKSTVDRD- 719
A ++T++ FADD+LVF +S L +L ++ +GL +N +K+ ++ +R+
Sbjct: 236 APMITHLSFADDILVFCDGSLSSLVAILDILDVFKKGSGLGINLQKTALLLDGGNFERNR 295
Query: 718 LLSGSLGIREPSFPLKYLGLPLVSRKRFVNECLPIF*IRCIIIFMDRKLVVSLRHLEWFY 539
+++ SLG+ + S P++YLG+PL+S+K ++ P+ + R + RHL +
Sbjct: 296 IMAASLGVSQGSLPVRYLGVPLMSQKMKKHDYQPL-----VDRINSRFTSWTARHLSFAG 350
Query: 538 *SMLCKLFIC----IGKSCFAIPSSILKKAESLMNKFL----NFNSRIISMSWENVCKPR 383
L K I S F +P+ L K E + N FL ++R +SW+ VC +
Sbjct: 351 RLQLLKSVIYSTINFWASIFILPNQCLHKLEQMCNAFLWSGAPNSAREAKISWDIVCSSK 410
Query: 382 EEGGLGLRRLKEVSLAAGLKLAWWVASKKDLLWIKWIHSQYIRSDTYWVSQAHMSSSWIQ 203
E GGLGL+RL + LKL W + + LW+ W+ W+
Sbjct: 411 ESGGLGLKRLSSWNKVLALKLIWLLFTASGSLWVSWVR-------------------WVW 451
Query: 202 KRLMKIRRVLEANVSYLIGKDLYTKVWLDPWSPLG 98
++L K+R V V +G + + W D W+ G
Sbjct: 452 RKLCKLREVARPFVICEVGSGITARFWQDNWTGHG 486
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 113 bits (283), Expect = 2e-22
Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 13/300 (4%)
Frame = -1
Query: 886 LTYIIFADDVLVFIYLRVSYLEEFNKLLRDIERKTGLAMNPEKSRIVYSKSTVDRDLLSG 707
+++++FADDV++F S + + L D +GL +N +KS++ + + + S
Sbjct: 552 ISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLDLSERITSA 611
Query: 706 SLGIREPSFPLKYLGLPLVSRKRFVNECLPIF*---------IRCIIIFMDRKLVVSLRH 554
+ G +FP++YLGLPL+ RK + + P+ + + F R ++S
Sbjct: 612 AYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLIS--- 668
Query: 553 LEWFY*SMLCKLFICIGKSCFAIPSSILKKAESLMNKFLNFNS----RIISMSWENVCKP 386
S++ L I S F +P +KK ESL +KFL S + +SW + C P
Sbjct: 669 ------SVIFGL-INFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLP 721
Query: 385 REEGGLGLRRLKEVSLAAGLKLAWWVASKKDLLWIKWIHSQYIRSDTYWVSQAHMSSSWI 206
+ EGGLG R E + L+L W + + LW +W + ++W A + W
Sbjct: 722 KSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWT 781
Query: 205 QKRLMKIRRVLEANVSYLIGKDLYTKVWLDPWSPLGVIARDCGKNARRGSDLRRDATIDD 26
K L+ +R + E + +G W D W+ LG + + G R + A + D
Sbjct: 782 WKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVAD 841
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 113 bits (283), Expect = 2e-22
Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 13/300 (4%)
Frame = -1
Query: 886 LTYIIFADDVLVFIYLRVSYLEEFNKLLRDIERKTGLAMNPEKSRIVYSKSTVDRDLLSG 707
+++++FADDV++F S + + L D +GL +N +KS++ + + + S
Sbjct: 552 ISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLDLSERITSA 611
Query: 706 SLGIREPSFPLKYLGLPLVSRKRFVNECLPIF*---------IRCIIIFMDRKLVVSLRH 554
+ G +FP++YLGLPL+ RK + + P+ + + F R ++S
Sbjct: 612 AYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLIS--- 668
Query: 553 LEWFY*SMLCKLFICIGKSCFAIPSSILKKAESLMNKFLNFNS----RIISMSWENVCKP 386
S++ L I S F +P +KK ESL +KFL S + +SW + C P
Sbjct: 669 ------SVIFGL-INFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLP 721
Query: 385 REEGGLGLRRLKEVSLAAGLKLAWWVASKKDLLWIKWIHSQYIRSDTYWVSQAHMSSSWI 206
+ EGGLG R E + L+L W + + LW +W + ++W A + W
Sbjct: 722 KSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWT 781
Query: 205 QKRLMKIRRVLEANVSYLIGKDLYTKVWLDPWSPLGVIARDCGKNARRGSDLRRDATIDD 26
K L+ +R + E + +G W D W+ LG + + G R + A + D
Sbjct: 782 WKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVAD 841
>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7267919|emb|CAB78261.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 662
Score = 109 bits (272), Expect = 4e-21
Identities = 81/289 (28%), Positives = 145/289 (50%), Gaps = 12/289 (4%)
Frame = -1
Query: 928 FGHNERTCLKSAGILTYIIFADDVLVFIYLRVSYLEEFNKLLRDIERKTGLAMNPEKSRI 749
FG++ + K+ G LT++ FADD++V ++ LE ++ +++GL ++ K+ I
Sbjct: 205 FGYHPKC--KNLG-LTHLSFADDIMVLTDGKLRSLEGIVEVFDSFAKQSGLKISMAKTTI 261
Query: 748 VY---SKSTVDR--DLLSGSLGIREPSFPLKYLGLPLVSRKRFVNECLPIF*I--RCIII 590
+ SKS D ++G P++YL LPLV+++ + P+ R I
Sbjct: 262 YFAGISKSVCKEFEDQFHFAVG----RLPVRYLCLPLVTKRFTSQDYSPLLEQIKRRIGT 317
Query: 589 FMDRKLVVSLR-HLEWFY*SMLCKLFICIGKSCFAIPSSILKKAESLMNKFL----NFNS 425
+ R L + R +L +C ++ S F +P +++ + L + FL ++
Sbjct: 318 WTARFLSYAGRLNLVSSVLWSICNFWL----SAFRLPRECVREIDKLCSAFLWSGPELST 373
Query: 424 RIISMSWENVCKPREEGGLGLRRLKEVSLAAGLKLAWWVASKKDLLWIKWIHSQYIRSDT 245
++WE VC+P+ EGGLGL+ +KE + LKL W + S+ D LW++WI + ++ +T
Sbjct: 374 NKAKIAWETVCRPKREGGLGLQSIKEANDVCCLKLIWRIVSQGDSLWVQWIRTYLLKRNT 433
Query: 244 YWVSQAHMSSSWIQKRLMKIRRVLEANVSYLIGKDLYTKVWLDPWSPLG 98
+W ++ SW+ K+L+K R +A I W D WS G
Sbjct: 434 FWSFRSASQGSWMWKKLLKYRDTAKAFSKVDIRNGETASFWYDDWSSKG 482
>ref|XP_006579104.1| PREDICTED: uncharacterized protein LOC102661523 [Glycine max]
Length = 947
Score = 108 bits (269), Expect = 1e-20
Identities = 68/252 (26%), Positives = 118/252 (46%), Gaps = 14/252 (5%)
Frame = -1
Query: 886 LTYIIFADDVLVFIYLRVSYLEEFNKLLRDIERKTGLAMNPEKSRIVYSK-STVDRDLLS 710
+T++ FADDVL+F V +E ++ TGL +NP K RI + ++ +
Sbjct: 511 ITHLTFADDVLLFCRGDVMSVEMMLHVINKFSATTGLVVNPNKCRIYFGGVDGTTKNKIQ 570
Query: 709 GSLGIREPSFPLKYLGLPLVSRKRFVNECLPIF*IRCIIIFMDRKLVVSLRHLEWFY*SM 530
E P++YLG+PL S+K + LP+ K+ +RH +M
Sbjct: 571 QISSYEEGQLPVRYLGVPLTSKKLNIKYYLPLI----------DKITTRIRHWTSKLLNM 620
Query: 529 LCKL---------FICIGKSCFAIPSSILKKAESLMNKFLNFNSRIIS----MSWENVCK 389
++ + C IP S++KK +S+ F+ S I+ ++W +VC+
Sbjct: 621 TGRVQMVNCTITAIVQFWMQCLPIPMSVIKKIDSMCRSFVWSRSTEITRKSPIAWNSVCR 680
Query: 388 PREEGGLGLRRLKEVSLAAGLKLAWWVASKKDLLWIKWIHSQYIRSDTYWVSQAHMSSSW 209
P+ +GGL + LK + L W + K D LW+KWIH+ YI++ + + + SW
Sbjct: 681 PKGQGGLNIFNLKVWNHITVLNCLWNLCKKVDNLWVKWIHAHYIKNSSVMNTMVTNNFSW 740
Query: 208 IQKRLMKIRRVL 173
+ K ++ R +
Sbjct: 741 VLKNVLSQREYI 752