BLASTX nr result
ID: Cocculus23_contig00026671
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00026671
(1284 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXC12983.1| 33 kDa ribonucleoprotein [Morus notabilis] 290 1e-75
ref|XP_006481614.1| PREDICTED: 33 kDa ribonucleoprotein, chlorop... 288 3e-75
ref|XP_002264127.1| PREDICTED: 33 kDa ribonucleoprotein, chlorop... 287 8e-75
ref|XP_007028003.1| Chloroplast RNA-binding protein 33 [Theobrom... 286 1e-74
ref|XP_006430047.1| hypothetical protein CICLE_v10012204mg [Citr... 286 1e-74
gb|EYU18105.1| hypothetical protein MIMGU_mgv1a009876mg [Mimulus... 286 2e-74
ref|XP_004136521.1| PREDICTED: 33 kDa ribonucleoprotein, chlorop... 285 4e-74
emb|CAN61277.1| hypothetical protein VITISV_002607 [Vitis vinifera] 285 4e-74
ref|XP_004228672.1| PREDICTED: 33 kDa ribonucleoprotein, chlorop... 284 5e-74
ref|XP_006348449.1| PREDICTED: 33 kDa ribonucleoprotein, chlorop... 283 1e-73
emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana s... 283 1e-73
sp|P19684.1|ROC5_NICSY RecName: Full=33 kDa ribonucleoprotein, c... 282 2e-73
ref|XP_006292182.1| hypothetical protein CARUB_v10018388mg [Caps... 281 3e-73
ref|XP_003521499.1| PREDICTED: 33 kDa ribonucleoprotein, chlorop... 280 1e-72
ref|XP_003554474.1| PREDICTED: 33 kDa ribonucleoprotein, chlorop... 280 1e-72
ref|XP_006403809.1| hypothetical protein EUTSA_v10010548mg [Eutr... 278 4e-72
ref|XP_004494258.1| PREDICTED: 33 kDa ribonucleoprotein, chlorop... 273 9e-71
ref|XP_002876141.1| RNA-binding protein cp33 [Arabidopsis lyrata... 273 9e-71
ref|NP_190806.1| chloroplast RNA-binding protein 33 [Arabidopsis... 272 2e-70
ref|XP_002309257.2| hypothetical protein POPTR_0006s21650g [Popu... 272 3e-70
>gb|EXC12983.1| 33 kDa ribonucleoprotein [Morus notabilis]
Length = 325
Score = 290 bits (741), Expect = 1e-75
Identities = 142/203 (69%), Positives = 174/203 (85%), Gaps = 1/203 (0%)
Frame = -3
Query: 886 ETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTEQAKEA 707
E RLYVGNLPY+M SQ+ +VF EAG V SVEVIY+RVTDRSRGF FVTMGS E+A+EA
Sbjct: 113 EGGRLYVGNLPYSMDSSQLAQVFGEAGTVFSVEVIYDRVTDRSRGFGFVTMGSVEEAQEA 172
Query: 706 IRMFDGSQIGGRTVKVNFPEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWDLTS 527
IR+FDGSQ+GGRTVKVNFP+VPRGGERE++GPKIR+ N+ +VD+P+KIYAGNLGW LTS
Sbjct: 173 IRLFDGSQVGGRTVKVNFPQVPRGGEREVLGPKIRNMNK-GYVDSPHKIYAGNLGWGLTS 231
Query: 526 QGLRDAFTDQSGVLSAKVIYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRPLRL 347
Q LRDAF DQ GVLSAKVIY+RD G+SRG+GF+SF +AE +QSALDAMNGVE++GRPLRL
Sbjct: 232 QDLRDAFADQPGVLSAKVIYERDTGRSRGFGFVSFETAEASQSALDAMNGVEVQGRPLRL 291
Query: 346 SLAAQRNTVVAPKT-QEIHTDSI 281
++A +R +P+T E+ T+ +
Sbjct: 292 NMATERAPPASPRTPPEVVTEGV 314
Score = 62.0 bits (149), Expect = 5e-07
Identities = 28/84 (33%), Positives = 50/84 (59%)
Frame = -3
Query: 907 LRKDRLSETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGS 728
+ K + ++Y GNL + +T +++ FA+ V S +VIY R T RSRGF FV+ +
Sbjct: 209 MNKGYVDSPHKIYAGNLGWGLTSQDLRDAFADQPGVLSAKVIYERDTGRSRGFGFVSFET 268
Query: 727 TEQAKEAIRMFDGSQIGGRTVKVN 656
E ++ A+ +G ++ GR +++N
Sbjct: 269 AEASQSALDAMNGVEVQGRPLRLN 292
>ref|XP_006481614.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Citrus
sinensis]
Length = 323
Score = 288 bits (738), Expect = 3e-75
Identities = 142/201 (70%), Positives = 171/201 (85%)
Frame = -3
Query: 886 ETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTEQAKEA 707
E +RLYVGNLPY+MT S + EVFAEAG VAS E++Y+RVTDRSRGF FVTMGS E+AKEA
Sbjct: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
Query: 706 IRMFDGSQIGGRTVKVNFPEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWDLTS 527
IR+FDGSQIGGRTVKVNFPEVPRGGER MGPK+++S Q FVD+P+KIYAGNLGW LTS
Sbjct: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNS-YQGFVDSPHKIYAGNLGWGLTS 229
Query: 526 QGLRDAFTDQSGVLSAKVIYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRPLRL 347
QGLRDAF Q G+LSAKVI++R G+SRG+GF++F +AE+ QSALDAMNGVE+EGRPLRL
Sbjct: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 289
Query: 346 SLAAQRNTVVAPKTQEIHTDS 284
++A +R V P +E T++
Sbjct: 290 NMANERAPPVLPAAKETKTEN 310
Score = 68.9 bits (167), Expect = 4e-09
Identities = 33/103 (32%), Positives = 58/103 (56%)
Frame = -3
Query: 652 PEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWDLTSQGLRDAFTDQSGVLSAKV 473
PE + E E + + A D ++Y GNL + +TS L + F + V SA++
Sbjct: 85 PETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEI 144
Query: 472 IYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRPLRLS 344
+YDR +SRG+GF++ S EEA+ A+ +G ++ GR ++++
Sbjct: 145 VYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187
>ref|XP_002264127.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 311
Score = 287 bits (734), Expect = 8e-75
Identities = 142/187 (75%), Positives = 166/187 (88%)
Frame = -3
Query: 889 SETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTEQAKE 710
+E SRLYVGNLPY+MT SQ+ +VF EAG V SVE++Y+RVTDRSRGFAFVTMGS ++AKE
Sbjct: 100 AEASRLYVGNLPYSMTSSQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKE 159
Query: 709 AIRMFDGSQIGGRTVKVNFPEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWDLT 530
AIRMFDGSQ+GGRTVKVNFPEVPRGGER +MGPKIRSS R FVD+PYKIYAGNL W LT
Sbjct: 160 AIRMFDGSQVGGRTVKVNFPEVPRGGERAVMGPKIRSSYR-GFVDSPYKIYAGNLSWRLT 218
Query: 529 SQGLRDAFTDQSGVLSAKVIYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRPLR 350
S+GLRDAF D G+L AKVIY+R+ G+SRG+GF+SF+SAE A+SAL+AMN VE+EGRPLR
Sbjct: 219 SEGLRDAFADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNAMNEVEVEGRPLR 278
Query: 349 LSLAAQR 329
L+LAA R
Sbjct: 279 LNLAAVR 285
>ref|XP_007028003.1| Chloroplast RNA-binding protein 33 [Theobroma cacao]
gi|508716608|gb|EOY08505.1| Chloroplast RNA-binding
protein 33 [Theobroma cacao]
Length = 340
Score = 286 bits (733), Expect = 1e-74
Identities = 140/212 (66%), Positives = 176/212 (83%), Gaps = 1/212 (0%)
Frame = -3
Query: 886 ETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTEQAKEA 707
E RLYVGNLPY+MT S++ E+F EAGRVA+VE++Y+RVTDRSRGFAFVTM S + AKEA
Sbjct: 128 EEGRLYVGNLPYSMTSSELSEIFNEAGRVANVEIVYDRVTDRSRGFAFVTMASVDDAKEA 187
Query: 706 IRMFDGSQIGGRTVKVNFPEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWDLTS 527
IR+FDGSQ+GGRTVKVNFPEVPRGGERE+MGPKIR + +F+D+PYKIYAGNLGW +TS
Sbjct: 188 IRLFDGSQVGGRTVKVNFPEVPRGGEREVMGPKIRRGYK-SFLDSPYKIYAGNLGWGVTS 246
Query: 526 QGLRDAFTDQSGVLSAKVIYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRPLRL 347
QGLRDAF Q G+LSAKVIY+RD G+SRG+GF+SF SAE ++AL+AMNGVE+EGRPLRL
Sbjct: 247 QGLRDAFASQPGLLSAKVIYERDTGRSRGFGFVSFESAETVEAALNAMNGVEVEGRPLRL 306
Query: 346 SLAAQRNT-VVAPKTQEIHTDSIQEDATKSTI 254
++AA R +P+ + +S++ S++
Sbjct: 307 NMAADRAPGTPSPEMERNTKESLESSELLSSV 338
Score = 62.0 bits (149), Expect = 5e-07
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Frame = -3
Query: 901 KDRLSETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTE 722
K L ++Y GNL + +T +++ FA + S +VIY R T RSRGF FV+ S E
Sbjct: 226 KSFLDSPYKIYAGNLGWGVTSQGLRDAFASQPGLLSAKVIYERDTGRSRGFGFVSFESAE 285
Query: 721 QAKEAIRMFDGSQIGGRTVKVNF----------PEVPRGGERELMGPKIRSS 596
+ A+ +G ++ GR +++N PE+ R + L ++ SS
Sbjct: 286 TVEAALNAMNGVEVEGRPLRLNMAADRAPGTPSPEMERNTKESLESSELLSS 337
>ref|XP_006430047.1| hypothetical protein CICLE_v10012204mg [Citrus clementina]
gi|557532104|gb|ESR43287.1| hypothetical protein
CICLE_v10012204mg [Citrus clementina]
Length = 322
Score = 286 bits (732), Expect = 1e-74
Identities = 141/201 (70%), Positives = 172/201 (85%)
Frame = -3
Query: 886 ETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTEQAKEA 707
E +RLYVGNLPY+MT S + EVFAEAG VAS E++Y+RVTDRSRGF FVTMGS E+AKEA
Sbjct: 110 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 169
Query: 706 IRMFDGSQIGGRTVKVNFPEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWDLTS 527
IR+FDGSQIGGRTVKVNFPEVPRGGER MGPK+++S Q FVD+P+KIYAGNLGW LTS
Sbjct: 170 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNS-YQGFVDSPHKIYAGNLGWGLTS 228
Query: 526 QGLRDAFTDQSGVLSAKVIYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRPLRL 347
QGLRDAF Q G+LSAKVI++R G+SRG+GF++F +AE+ QSALDAMNGVE+EGRPLRL
Sbjct: 229 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRL 288
Query: 346 SLAAQRNTVVAPKTQEIHTDS 284
++A +R V+ +E +T++
Sbjct: 289 NMANERAPPVSLAAKETNTEN 309
Score = 67.8 bits (164), Expect = 1e-08
Identities = 31/90 (34%), Positives = 56/90 (62%)
Frame = -3
Query: 613 PKIRSSNRQAFVDTPYKIYAGNLGWDLTSQGLRDAFTDQSGVLSAKVIYDRDFGKSRGYG 434
PK+ +S+ A ++Y GNL + +TS L + F + V SA+++YDR +SRG+G
Sbjct: 103 PKVAASDEAA------RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 156
Query: 433 FISFSSAEEAQSALDAMNGVELEGRPLRLS 344
F++ S EEA+ A+ +G ++ GR ++++
Sbjct: 157 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 186
>gb|EYU18105.1| hypothetical protein MIMGU_mgv1a009876mg [Mimulus guttatus]
Length = 328
Score = 286 bits (731), Expect = 2e-74
Identities = 139/185 (75%), Positives = 164/185 (88%)
Frame = -3
Query: 883 TSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTEQAKEAI 704
+ RLY GNLP++MT +Q+ E+FAEAGRV SVE++Y+RVTDRSRGFAFVTMGS E+AKEAI
Sbjct: 115 SGRLYAGNLPFSMTSAQLSEIFAEAGRVVSVEIVYDRVTDRSRGFAFVTMGSVEEAKEAI 174
Query: 703 RMFDGSQIGGRTVKVNFPEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWDLTSQ 524
R+FDG+QIGGRT KVN PEVPRGGERE+M PKIRSS Q FVD+PYKIYAGNL W+LTSQ
Sbjct: 175 RLFDGAQIGGRTAKVNIPEVPRGGEREVMSPKIRSS-YQGFVDSPYKIYAGNLSWNLTSQ 233
Query: 523 GLRDAFTDQSGVLSAKVIYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRPLRLS 344
LRD F+ Q G LSAKVIYDRD G+SRG+GFI+FSSAE+ QSA+DA+NG+ELEGRPLRL+
Sbjct: 234 ILRDTFSQQPGFLSAKVIYDRDSGRSRGFGFITFSSAEDVQSAMDALNGLELEGRPLRLN 293
Query: 343 LAAQR 329
L+ QR
Sbjct: 294 LSEQR 298
>ref|XP_004136521.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus] gi|449528229|ref|XP_004171108.1| PREDICTED: 33
kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 323
Score = 285 bits (728), Expect = 4e-74
Identities = 137/189 (72%), Positives = 168/189 (88%)
Frame = -3
Query: 886 ETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTEQAKEA 707
E +LY+GNLPY MT SQ+ EVFAEAG V SV+VIY++VTDRSRGFAFVTM + E+AKEA
Sbjct: 113 EAGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEA 172
Query: 706 IRMFDGSQIGGRTVKVNFPEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWDLTS 527
IRMFDGSQIGGRTV+VNFPEVPRGGE+E+MGP+IRSS + FVD+P+KIYAGNLGW LTS
Sbjct: 173 IRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNK-FVDSPHKIYAGNLGWGLTS 231
Query: 526 QGLRDAFTDQSGVLSAKVIYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRPLRL 347
Q LRDAF +Q G+LSAK+IYDR GKSRG+GF+SF +AE+A+SAL++MNGVE+EGRPLRL
Sbjct: 232 QSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRL 291
Query: 346 SLAAQRNTV 320
++AA ++ +
Sbjct: 292 NIAAGQSPI 300
>emb|CAN61277.1| hypothetical protein VITISV_002607 [Vitis vinifera]
Length = 454
Score = 285 bits (728), Expect = 4e-74
Identities = 141/187 (75%), Positives = 165/187 (88%)
Frame = -3
Query: 889 SETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTEQAKE 710
+E SRLYVGNLPY+MT SQ+ VF EAG V SVE++Y+RVTDRSRGFAFVTMGS ++AKE
Sbjct: 243 AEASRLYVGNLPYSMTSSQLGXVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKE 302
Query: 709 AIRMFDGSQIGGRTVKVNFPEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWDLT 530
AIRMFDGSQ+GGRTVKVNFPEVPRGGER +MGPKIRSS R FVD+PYKIYAGNL W LT
Sbjct: 303 AIRMFDGSQVGGRTVKVNFPEVPRGGERAVMGPKIRSSYR-GFVDSPYKIYAGNLSWRLT 361
Query: 529 SQGLRDAFTDQSGVLSAKVIYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRPLR 350
S+GLRDAF D G+L AKVIY+R+ G+SRG+GF+SF+SAE A+SAL+AM+ VE+EGRPLR
Sbjct: 362 SEGLRDAFADXPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNAMBEVEVEGRPLR 421
Query: 349 LSLAAQR 329
L+LAA R
Sbjct: 422 LNLAAVR 428
>ref|XP_004228672.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Solanum
lycopersicum]
Length = 328
Score = 284 bits (727), Expect = 5e-74
Identities = 140/199 (70%), Positives = 169/199 (84%), Gaps = 3/199 (1%)
Frame = -3
Query: 886 ETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTEQAKEA 707
E RLYVGNLP++MTPSQ+ E+FAEAG+VA+VE++Y+RVTDRSRGFAFVTMGS E AKEA
Sbjct: 124 EDGRLYVGNLPFSMTPSQLSEIFAEAGKVANVEIVYDRVTDRSRGFAFVTMGSVEDAKEA 183
Query: 706 IRMFDGSQIGGRTVKVNFPEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWDLTS 527
+R+FDGSQ+GGRTVKVNFPEVPRGGER++M KIRS+ Q FVD+P+K+Y NL W+LTS
Sbjct: 184 VRLFDGSQVGGRTVKVNFPEVPRGGERQVMSAKIRST-YQGFVDSPHKLYVANLSWNLTS 242
Query: 526 QGLRDAFTDQSGVLSAKVIYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRPLRL 347
QGL+DAF DQ G LSAKVIYDR G+SRG+GFI+FSSAE +ALD MN V+LEGRPLRL
Sbjct: 243 QGLKDAFADQPGFLSAKVIYDRASGRSRGFGFITFSSAEAMNNALDTMNEVDLEGRPLRL 302
Query: 346 SLAAQRNTVVAP---KTQE 299
++A QR+ V +P KT E
Sbjct: 303 NIAGQRDPVSSPPVVKTSE 321
>ref|XP_006348449.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Solanum
tuberosum]
Length = 329
Score = 283 bits (723), Expect = 1e-73
Identities = 138/212 (65%), Positives = 173/212 (81%)
Frame = -3
Query: 886 ETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTEQAKEA 707
E RLYVGNLP++MTPSQ+ E+F EAG+VA+VE++Y+RVTDRSRGFAFVTMGS E+A+EA
Sbjct: 120 EDGRLYVGNLPFSMTPSQLSEIFTEAGKVANVEIVYDRVTDRSRGFAFVTMGSVEEAEEA 179
Query: 706 IRMFDGSQIGGRTVKVNFPEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWDLTS 527
+R+FDGSQ+GGRTVKVNFPEVPRGGERE+M KIRS+ Q FVD+P+K+Y NL W+LTS
Sbjct: 180 VRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRST-YQGFVDSPHKLYVANLSWNLTS 238
Query: 526 QGLRDAFTDQSGVLSAKVIYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRPLRL 347
QGL+DAF DQ G LSAKVIYDR G+SRG+GFI+FSSAE +ALD MN V+LEGRPLRL
Sbjct: 239 QGLKDAFADQPGFLSAKVIYDRASGRSRGFGFITFSSAEAMNNALDTMNEVDLEGRPLRL 298
Query: 346 SLAAQRNTVVAPKTQEIHTDSIQEDATKSTIG 251
++A Q++ V +P + T + S++G
Sbjct: 299 NIAGQKDPVSSPPV--VETSDSENSEILSSLG 328
>emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris]
Length = 319
Score = 283 bits (723), Expect = 1e-73
Identities = 140/205 (68%), Positives = 169/205 (82%)
Frame = -3
Query: 886 ETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTEQAKEA 707
E RLYVGNLP++MT SQ+ E+FAEAG VA+VE++Y+RVTDRSRGFAFVTMGS E+AKEA
Sbjct: 107 EGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEA 166
Query: 706 IRMFDGSQIGGRTVKVNFPEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWDLTS 527
IR+FDGSQ+GGRTVKVNFPEVPRGGERE+M KIRS+ Q FVD+P+K+Y NL W LTS
Sbjct: 167 IRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRST-YQGFVDSPHKLYVANLSWALTS 225
Query: 526 QGLRDAFTDQSGVLSAKVIYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRPLRL 347
QGLRDAF DQ G +SAKVIYDR G+SRG+GFI+FSSAE +SALD MN VELEGRPLRL
Sbjct: 226 QGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKSALDTMNEVELEGRPLRL 285
Query: 346 SLAAQRNTVVAPKTQEIHTDSIQED 272
++A Q+ + +P E ++ E+
Sbjct: 286 NVAGQKAPLSSPSVVETSPENDSEN 310
>sp|P19684.1|ROC5_NICSY RecName: Full=33 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor gi|100390|pir||S12111 ribonucleoprotein, 33K,
precursor - common tobacco gi|20005|emb|CAA37879.1|
unnamed protein product [Nicotiana tabacum]
Length = 324
Score = 282 bits (722), Expect = 2e-73
Identities = 140/206 (67%), Positives = 169/206 (82%)
Frame = -3
Query: 886 ETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTEQAKEA 707
E RLYVGNLP++MT SQ+ E+FAEAG VA+VE++Y+RVTDRSRGFAFVTMGS E+AKEA
Sbjct: 112 EGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEA 171
Query: 706 IRMFDGSQIGGRTVKVNFPEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWDLTS 527
IR+FDGSQ+GGRTVKVNFPEVPRGGERE+M KIRS+ Q FVD+P+K+Y NL W LTS
Sbjct: 172 IRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRST-YQGFVDSPHKLYVANLSWALTS 230
Query: 526 QGLRDAFTDQSGVLSAKVIYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRPLRL 347
QGLRDAF DQ G +SAKVIYDR G+SRG+GFI+FSSAE SALD MN VELEGRPLRL
Sbjct: 231 QGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRL 290
Query: 346 SLAAQRNTVVAPKTQEIHTDSIQEDA 269
++A Q+ V +P E ++ +++
Sbjct: 291 NVAGQKAPVSSPPVVETSPENDSDNS 316
>ref|XP_006292182.1| hypothetical protein CARUB_v10018388mg [Capsella rubella]
gi|482560889|gb|EOA25080.1| hypothetical protein
CARUB_v10018388mg [Capsella rubella]
Length = 342
Score = 281 bits (720), Expect = 3e-73
Identities = 138/211 (65%), Positives = 178/211 (84%), Gaps = 3/211 (1%)
Frame = -3
Query: 886 ETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTEQAKEA 707
E RLYVGNLPYT+T S++ ++F EAG++ V+++Y++VTDRSRGF FVTMGS E+AKEA
Sbjct: 118 EEGRLYVGNLPYTITSSELSQIFGEAGKIVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEA 177
Query: 706 IRMFDGSQIGGRTVKVNFPEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWDLTS 527
I+MF+ SQIGGRTVKVNFPEVPRGGERE+M KIR +NR ++VD+P+KIYAGNLGW+LTS
Sbjct: 178 IQMFNSSQIGGRTVKVNFPEVPRGGEREVMRTKIRDNNR-SYVDSPHKIYAGNLGWNLTS 236
Query: 526 QGLRDAFTDQSGVLSAKVIYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRPLRL 347
QGL+DAF DQSGVL AKVIY+R+ G+SRG+GFISF SA++ QSAL MNGVE+EGR LRL
Sbjct: 237 QGLKDAFADQSGVLGAKVIYERNTGRSRGFGFISFESADDVQSALSTMNGVEVEGRALRL 296
Query: 346 SLAAQRN--TVVAPKTQE-IHTDSIQEDATK 263
+LA++R TV P +E + ++++E AT+
Sbjct: 297 NLASEREKPTVSPPAVEEGLTEEAVEEGATE 327
>ref|XP_003521499.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like isoform X1
[Glycine max]
Length = 314
Score = 280 bits (716), Expect = 1e-72
Identities = 139/196 (70%), Positives = 166/196 (84%)
Frame = -3
Query: 886 ETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTEQAKEA 707
+ RLYVGNLPY++T S + E+F EAG VASVE++Y+RVTDRSRGFAFVTMG+ E AKEA
Sbjct: 103 DAGRLYVGNLPYSITNSALAELFGEAGTVASVEIMYDRVTDRSRGFAFVTMGNVEDAKEA 162
Query: 706 IRMFDGSQIGGRTVKVNFPEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWDLTS 527
IRMFDGSQ+GGRTVKVNFPEVP+GGER +MG KIR+S R FVD+P+KIYAGNLGW LTS
Sbjct: 163 IRMFDGSQVGGRTVKVNFPEVPKGGERLVMGSKIRNSYR-GFVDSPHKIYAGNLGWGLTS 221
Query: 526 QGLRDAFTDQSGVLSAKVIYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRPLRL 347
QGLR+AF +Q GVLSAKVIY+RD G+SRG+GF+SF +AE AQ+ALD MNGVE++GRPLRL
Sbjct: 222 QGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESAQAALDIMNGVEVQGRPLRL 281
Query: 346 SLAAQRNTVVAPKTQE 299
+LA R P Q+
Sbjct: 282 NLAEARAPSSPPVIQK 297
>ref|XP_003554474.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 317
Score = 280 bits (715), Expect = 1e-72
Identities = 138/197 (70%), Positives = 167/197 (84%)
Frame = -3
Query: 889 SETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTEQAKE 710
++ RLYVGNLPY++T S++ E+F EAG VASVE++Y+RVTDRSRGFAFVTMGS E AKE
Sbjct: 105 NDAGRLYVGNLPYSITNSELGELFGEAGTVASVEIVYDRVTDRSRGFAFVTMGSVEDAKE 164
Query: 709 AIRMFDGSQIGGRTVKVNFPEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWDLT 530
AIRMFDGSQ+GGRTVKVNFPEVP+GGER +MG KI +S R FVD+P+KIYAGNLGW LT
Sbjct: 165 AIRMFDGSQVGGRTVKVNFPEVPKGGERLVMGSKILNSYR-GFVDSPHKIYAGNLGWGLT 223
Query: 529 SQGLRDAFTDQSGVLSAKVIYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRPLR 350
SQGLR+AF +Q GVLSAKVIY+RD G+SRG+GF+SF +AE A++ALD MNGVE++GRPLR
Sbjct: 224 SQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESARAALDIMNGVEVQGRPLR 283
Query: 349 LSLAAQRNTVVAPKTQE 299
L+LA R P Q+
Sbjct: 284 LNLAEARTPSSPPVIQK 300
>ref|XP_006403809.1| hypothetical protein EUTSA_v10010548mg [Eutrema salsugineum]
gi|557104928|gb|ESQ45262.1| hypothetical protein
EUTSA_v10010548mg [Eutrema salsugineum]
Length = 322
Score = 278 bits (711), Expect = 4e-72
Identities = 138/213 (64%), Positives = 171/213 (80%), Gaps = 2/213 (0%)
Frame = -3
Query: 886 ETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTEQAKEA 707
E RLYVGNLPYT+T S++ E+F EAG V V+++Y++VTDRSRGF FVTMGS E+AKEA
Sbjct: 109 EEGRLYVGNLPYTITSSELSELFGEAGNVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEA 168
Query: 706 IRMFDGSQIGGRTVKVNFPEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWDLTS 527
I+MF+ SQIGGRTVKVNFPEVPRGGERE+M KIR +NR ++VD+P+KIYAGNLGW LTS
Sbjct: 169 IQMFNSSQIGGRTVKVNFPEVPRGGEREVMRTKIRDTNR-SYVDSPHKIYAGNLGWSLTS 227
Query: 526 QGLRDAFTDQSGVLSAKVIYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRPLRL 347
QGL+DAF DQ GVL AKVIY+R+ G+SRG+GFISF SA++ QSAL AMNGVE+EGR LRL
Sbjct: 228 QGLKDAFADQPGVLGAKVIYERNSGRSRGFGFISFESAQDVQSALSAMNGVEVEGRALRL 287
Query: 346 SLAAQRNTVVAPKTQE--IHTDSIQEDATKSTI 254
+LA++R T P + +S++ S I
Sbjct: 288 NLASERATESVPSVAQGVTEEESVESSEVLSNI 320
>ref|XP_004494258.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cicer
arietinum]
Length = 318
Score = 273 bits (699), Expect = 9e-71
Identities = 133/201 (66%), Positives = 168/201 (83%)
Frame = -3
Query: 886 ETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTEQAKEA 707
+ RLYVGNLP+++T SQ+ E+FAEAG V SVE++Y+RVTDRSRGFAFVTM S E+AKEA
Sbjct: 106 DAGRLYVGNLPFSITSSQLAEIFAEAGTVVSVEIVYDRVTDRSRGFAFVTMKSVEEAKEA 165
Query: 706 IRMFDGSQIGGRTVKVNFPEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWDLTS 527
IRMFDGSQIGGR+ KVNFPEVP+GGER +MG K+RS+ + FVD+P+KIYAGNLGW L S
Sbjct: 166 IRMFDGSQIGGRSAKVNFPEVPKGGERLVMGKKVRSAYK-GFVDSPHKIYAGNLGWGLNS 224
Query: 526 QGLRDAFTDQSGVLSAKVIYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRPLRL 347
Q LRDAF +Q G+L AKVIY+RD G+SRG+GF++F +AE ++AL+AMNGVE++GRPLRL
Sbjct: 225 QELRDAFAEQPGLLGAKVIYERDNGRSRGFGFVTFETAENLEAALNAMNGVEVQGRPLRL 284
Query: 346 SLAAQRNTVVAPKTQEIHTDS 284
+LA++R T P E +T S
Sbjct: 285 NLASERTTSSPPPVVEENTKS 305
Score = 61.6 bits (148), Expect = 7e-07
Identities = 27/90 (30%), Positives = 51/90 (56%)
Frame = -3
Query: 613 PKIRSSNRQAFVDTPYKIYAGNLGWDLTSQGLRDAFTDQSGVLSAKVIYDRDFGKSRGYG 434
P+ + D ++Y GNL + +TS L + F + V+S +++YDR +SRG+
Sbjct: 93 PQQEEEQKVTISDDAGRLYVGNLPFSITSSQLAEIFAEAGTVVSVEIVYDRVTDRSRGFA 152
Query: 433 FISFSSAEEAQSALDAMNGVELEGRPLRLS 344
F++ S EEA+ A+ +G ++ GR +++
Sbjct: 153 FVTMKSVEEAKEAIRMFDGSQIGGRSAKVN 182
>ref|XP_002876141.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
gi|297321979|gb|EFH52400.1| RNA-binding protein cp33
[Arabidopsis lyrata subsp. lyrata]
Length = 330
Score = 273 bits (699), Expect = 9e-71
Identities = 135/210 (64%), Positives = 172/210 (81%), Gaps = 2/210 (0%)
Frame = -3
Query: 886 ETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTEQAKEA 707
E RLYVGNLPYT+T S++ ++F EAG V V+++Y++VTDRSRGF FVTMG+ E+AKEA
Sbjct: 115 EEGRLYVGNLPYTITSSELSQLFGEAGNVVDVQIVYDKVTDRSRGFGFVTMGTIEEAKEA 174
Query: 706 IRMFDGSQIGGRTVKVNFPEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWDLTS 527
I+MF+ SQIGGRTVKVN PEVPRGGERE+M KIR +NR ++VD+P+KIYAGNLGW+LTS
Sbjct: 175 IQMFNSSQIGGRTVKVNLPEVPRGGEREVMRTKIRDNNR-SYVDSPHKIYAGNLGWNLTS 233
Query: 526 QGLRDAFTDQSGVLSAKVIYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRPLRL 347
QGL+DAF DQ GVL AKVIY+R+ G+SRG+GFISF SAE+ QSAL MNGVE+EGR LRL
Sbjct: 234 QGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAEDVQSALATMNGVEVEGRALRL 293
Query: 346 SLAAQRN--TVVAPKTQEIHTDSIQEDATK 263
+LA++R TV P +E T + ++++
Sbjct: 294 NLASERERPTVSPPSVEEGETKDVSLESSE 323
>ref|NP_190806.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
gi|681910|dbj|BAA06522.1| RNA-binding protein cp33
[Arabidopsis thaliana] gi|4886289|emb|CAB43448.1|
RNA-binding protein cp33 precursor [Arabidopsis
thaliana] gi|14517544|gb|AAK62662.1| AT3g52380/F22O6_240
[Arabidopsis thaliana] gi|18700226|gb|AAL77723.1|
AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|21553418|gb|AAM62511.1| RNA-binding protein cp33
[Arabidopsis thaliana] gi|332645419|gb|AEE78940.1|
chloroplast RNA-binding protein 33 [Arabidopsis
thaliana]
Length = 329
Score = 272 bits (696), Expect = 2e-70
Identities = 134/202 (66%), Positives = 167/202 (82%), Gaps = 2/202 (0%)
Frame = -3
Query: 886 ETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTEQAKEA 707
E RLYVGNLPYT+T S++ ++F EAG V V+++Y++VTDRSRGF FVTMGS E+AKEA
Sbjct: 114 EEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEA 173
Query: 706 IRMFDGSQIGGRTVKVNFPEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWDLTS 527
++MF+ SQIGGRTVKVNFPEVPRGGE E+M KIR +NR ++VD+P+K+YAGNLGW+LTS
Sbjct: 174 MQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNR-SYVDSPHKVYAGNLGWNLTS 232
Query: 526 QGLRDAFTDQSGVLSAKVIYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRPLRL 347
QGL+DAF DQ GVL AKVIY+R+ G+SRG+GFISF SAE QSAL MNGVE+EGR LRL
Sbjct: 233 QGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRL 292
Query: 346 SLAAQRN--TVVAPKTQEIHTD 287
+LA++R TV P +E T+
Sbjct: 293 NLASEREKPTVSPPSVEEGETE 314
>ref|XP_002309257.2| hypothetical protein POPTR_0006s21650g [Populus trichocarpa]
gi|550336813|gb|EEE92780.2| hypothetical protein
POPTR_0006s21650g [Populus trichocarpa]
Length = 326
Score = 272 bits (695), Expect = 3e-70
Identities = 133/204 (65%), Positives = 172/204 (84%)
Frame = -3
Query: 895 RLSETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTEQA 716
+ +E +LYVGNLPY+MT S++ EVF EAGRV S EVIY+RVTDRSRGF FVTMGS E+A
Sbjct: 113 KATEEGKLYVGNLPYSMTSSELTEVFEEAGRVFSAEVIYDRVTDRSRGFGFVTMGSVEEA 172
Query: 715 KEAIRMFDGSQIGGRTVKVNFPEVPRGGERELMGPKIRSSNRQAFVDTPYKIYAGNLGWD 536
K+AI+MF+G+Q GGR+V+VNFPEVPRGGERE+MGP+I+S + F+D+ +KIYAGNLGW
Sbjct: 173 KKAIQMFNGTQFGGRSVRVNFPEVPRGGEREVMGPRIQSGYK-GFIDSEHKIYAGNLGWR 231
Query: 535 LTSQGLRDAFTDQSGVLSAKVIYDRDFGKSRGYGFISFSSAEEAQSALDAMNGVELEGRP 356
LTS+GLRDAF +Q GVLSAKVIY+RD +SRG+GF+SF SAE A++AL+AMNG E+EGRP
Sbjct: 232 LTSEGLRDAFANQPGVLSAKVIYERDSRRSRGFGFVSFESAENAEAALEAMNGEEVEGRP 291
Query: 355 LRLSLAAQRNTVVAPKTQEIHTDS 284
+RL+LA +R+ P +E +T++
Sbjct: 292 MRLNLAGERSP--PPSAKENNTEN 313
Score = 62.0 bits (149), Expect = 5e-07
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = -3
Query: 901 KDRLSETSRLYVGNLPYTMTPSQIKEVFAEAGRVASVEVIYNRVTDRSRGFAFVTMGSTE 722
K + ++Y GNL + +T +++ FA V S +VIY R + RSRGF FV+ S E
Sbjct: 214 KGFIDSEHKIYAGNLGWRLTSEGLRDAFANQPGVLSAKVIYERDSRRSRGFGFVSFESAE 273
Query: 721 QAKEAIRMFDGSQIGGRTVKVN 656
A+ A+ +G ++ GR +++N
Sbjct: 274 NAEAALEAMNGEEVEGRPMRLN 295