BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00025674
         (1399 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vi...   536   e-149
ref|XP_007041228.1| Pseudouridine synthase family protein isofor...   510   e-142
ref|XP_007041230.1| Pseudouridine synthase family protein isofor...   503   e-140
ref|XP_006349329.1| PREDICTED: tRNA pseudouridine synthase-like ...   501   e-139
ref|XP_004230453.1| PREDICTED: tRNA pseudouridine synthase A-lik...   500   e-139
ref|XP_004485453.1| PREDICTED: tRNA pseudouridine synthase A-lik...   493   e-136
ref|XP_006389535.1| hypothetical protein POPTR_0022s00690g [Popu...   492   e-136
ref|XP_004161929.1| PREDICTED: tRNA pseudouridine synthase A-lik...   486   e-135
ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase-like ...   485   e-134
ref|XP_004309887.1| PREDICTED: tRNA pseudouridine synthase A-lik...   483   e-133
ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus ...   481   e-133
ref|XP_006663893.1| PREDICTED: tRNA pseudouridine synthase-like ...   481   e-133
ref|XP_007148561.1| hypothetical protein PHAVU_006G218900g [Phas...   478   e-132
ref|XP_004977156.1| PREDICTED: tRNA pseudouridine synthase-like ...   478   e-132
gb|EEC68990.1| hypothetical protein OsI_37759 [Oryza sativa Indi...   477   e-132
ref|NP_001066352.1| Os12g0194800 [Oryza sativa Japonica Group] g...   477   e-132
ref|XP_006417534.1| hypothetical protein EUTSA_v10007981mg [Eutr...   477   e-132
ref|NP_001242177.1| uncharacterized protein LOC100799818 [Glycin...   476   e-131
gb|EYU26478.1| hypothetical protein MIMGU_mgv1a018737mg [Mimulus...   475   e-131
ref|XP_007148560.1| hypothetical protein PHAVU_006G218900g [Phas...   472   e-130

>ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vitis vinifera]
            gi|297739525|emb|CBI29707.3| unnamed protein product
            [Vitis vinifera]
          Length = 380

 Score =  536 bits (1380), Expect = e-149
 Identities = 267/380 (70%), Positives = 313/380 (82%)
 Frame = +1

Query: 58   SNMQTSRNPGDPKRFLESPTELPIEKPSKIAKTDSDNLSDEEKEELKNQQVMNQNPRLQR 237
            +++  S     PK  L   +E P ++PSKIA+TD  +LSD E+++    + M QNPR+QR
Sbjct: 7    TSISESARSDSPKHLLNRRSESP-QRPSKIARTD--DLSDGEQQDSVASKTMTQNPRVQR 63

Query: 238  YLVAIEYIGTRFSGSQKQPNFRTVVGVLEEAFHKFIGQPVSILCSSRTDAGVHALSNVCH 417
            YLVA+EYIGTRFSGSQ+Q N RTV G L+EAFHKFIGQPVSI CSSRTDAGVHALSNVCH
Sbjct: 64   YLVAVEYIGTRFSGSQQQLNCRTVAGALQEAFHKFIGQPVSIFCSSRTDAGVHALSNVCH 123

Query: 418  VDIERISKRKPGELLPPHEPGVVRRAVNHFLQKNEGDIVVIDVRCIPADFHARHKARERI 597
            VD+ERISKRKPGE+LPPHEP VVRRAVNHFLQKNEGD++VIDVRC+P DFHAR+KARER 
Sbjct: 124  VDVERISKRKPGEVLPPHEPAVVRRAVNHFLQKNEGDVMVIDVRCVPPDFHARYKARERT 183

Query: 598  YFYRLLSGPESLSTFEKDRAWHIPEEVDVVAMQKACKILMGQHDFSSFRAAGCQAKSPIR 777
            YFYRLLSGPE LS+FEKDRAWH+PE++D++AMQKAC++L+G HDFSSFRAAGCQAKSPIR
Sbjct: 184  YFYRLLSGPEPLSSFEKDRAWHVPEDLDLLAMQKACRVLVGCHDFSSFRAAGCQAKSPIR 243

Query: 778  TLDELNVTEVLPTPYFPSSVERGQFDSLQQAPLLNSCTSRVELPIKSSIADHCVADSSNY 957
            TLDEL V+EVLPTPYFPS  ER Q +  ++ PL  +C++  E+P   S A+H   D  N 
Sbjct: 244  TLDELCVSEVLPTPYFPSITERAQNNFTEENPL--ACSNNAEVPDSPSTANHDRLDGFNG 301

Query: 958  ISGVEFGQRRRHRCYVITARARSFLYHQVRLLVGVLKSVGTGDLTPDDVQRILEAKNVAA 1137
             +G  FG RRRHRC+++TARARSFLYHQVRLLVGV+K VGTGDLT  DV+RIL AK V A
Sbjct: 302  -AGQGFGVRRRHRCFLVTARARSFLYHQVRLLVGVIKCVGTGDLTVSDVERILNAKTVTA 360

Query: 1138 ASPMAPACGLYLGRVKYDLP 1197
            ASPMAPACGLYLG V YDLP
Sbjct: 361  ASPMAPACGLYLGNVNYDLP 380


>ref|XP_007041228.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
            gi|508705163|gb|EOX97059.1| Pseudouridine synthase family
            protein isoform 1 [Theobroma cacao]
          Length = 374

 Score =  510 bits (1313), Expect = e-142
 Identities = 268/373 (71%), Positives = 304/373 (81%), Gaps = 3/373 (0%)
 Frame = +1

Query: 88   DPKRFLESPTELPIEKPSKIAKTDSDNLSDEEKEELKNQQV--MNQNPRLQRYLVAIEYI 261
            +PK  L +  E    +PSKI KT  D+   EE+EE K QQ   M++NPR+QRYLVAIEYI
Sbjct: 4    NPKHSLSTTPES--SRPSKIPKTQ-DHSDQEEEEEDKQQQESSMSKNPRIQRYLVAIEYI 60

Query: 262  GTRFSGSQKQPNFRTVVGVLEEAFHKFIGQPVSILCSSRTDAGVHALSNVCHVDIERISK 441
            GTRFSGSQ+QPN RTVVGVLEEAF KFIGQPVSI CSSRTDAGVHALSNVCHVD+ERISK
Sbjct: 61   GTRFSGSQQQPNCRTVVGVLEEAFLKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISK 120

Query: 442  RKPGELLPPHEPGVVRRAVNHFLQKNEGDIVVIDVRCIPADFHARHKARERIYFYRLLSG 621
            RKPGE+LPPHEP VVRRAVNHFLQK+EGDI VIDVRC+P DFHAR+KA+ER YFYRLLSG
Sbjct: 121  RKPGEVLPPHEPSVVRRAVNHFLQKSEGDITVIDVRCVPNDFHARYKAQERTYFYRLLSG 180

Query: 622  PESLSTFEKDRAWHIPEEVDVVAMQKACKILMGQHDFSSFRAAGCQAKSPIRTLDELNVT 801
             E LSTFEK+RAWH+PE++D+ AMQ+ACK+L+G HDFSSFRAAGCQAKSPIRTLDEL+V+
Sbjct: 181  SEPLSTFEKERAWHVPEKLDLYAMQEACKVLVGHHDFSSFRAAGCQAKSPIRTLDELHVS 240

Query: 802  EVLPTPYFPSSVERGQFDSLQQAPLLNSCTSRVELPIKS-SIADHCVADSSNYISGVEFG 978
            E  PTPYFPS  E+ Q +S  +     S    ++LPI S S +D  V   SN I+ + FG
Sbjct: 241  EAPPTPYFPSISEKKQNNSSTEDSHACSREPEIDLPIDSFSNSDDEV--GSNGITDLGFG 298

Query: 979  QRRRHRCYVITARARSFLYHQVRLLVGVLKSVGTGDLTPDDVQRILEAKNVAAASPMAPA 1158
             RRRH CYV+TARARSFLYHQVRLLVGVLK VGTG+LT  DV+RIL AK V AASPMAPA
Sbjct: 299  IRRRHHCYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERILNAKTVTAASPMAPA 358

Query: 1159 CGLYLGRVKYDLP 1197
             GLYLG VKYDLP
Sbjct: 359  YGLYLGCVKYDLP 371


>ref|XP_007041230.1| Pseudouridine synthase family protein isoform 3 [Theobroma cacao]
            gi|508705165|gb|EOX97061.1| Pseudouridine synthase family
            protein isoform 3 [Theobroma cacao]
          Length = 373

 Score =  503 bits (1296), Expect = e-140
 Identities = 267/373 (71%), Positives = 303/373 (81%), Gaps = 3/373 (0%)
 Frame = +1

Query: 88   DPKRFLESPTELPIEKPSKIAKTDSDNLSDEEKEELKNQQV--MNQNPRLQRYLVAIEYI 261
            +PK  L +  E    +PSKI KT  D+   EE+EE K QQ   M++NPR+QRYLVAIEYI
Sbjct: 4    NPKHSLSTTPES--SRPSKIPKTQ-DHSDQEEEEEDKQQQESSMSKNPRIQRYLVAIEYI 60

Query: 262  GTRFSGSQKQPNFRTVVGVLEEAFHKFIGQPVSILCSSRTDAGVHALSNVCHVDIERISK 441
            GTRFSGSQ+QPN RTVVGVLEEAF KFIGQPVSI CSSRTDAGVHALSNVCHVD+ERISK
Sbjct: 61   GTRFSGSQQQPNCRTVVGVLEEAFLKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISK 120

Query: 442  RKPGELLPPHEPGVVRRAVNHFLQKNEGDIVVIDVRCIPADFHARHKARERIYFYRLLSG 621
            RKPGE+LPPHEP VVRRAVNHFLQ +EGDI VIDVRC+P DFHAR+KA+ER YFYRLLSG
Sbjct: 121  RKPGEVLPPHEPSVVRRAVNHFLQ-SEGDITVIDVRCVPNDFHARYKAQERTYFYRLLSG 179

Query: 622  PESLSTFEKDRAWHIPEEVDVVAMQKACKILMGQHDFSSFRAAGCQAKSPIRTLDELNVT 801
             E LSTFEK+RAWH+PE++D+ AMQ+ACK+L+G HDFSSFRAAGCQAKSPIRTLDEL+V+
Sbjct: 180  SEPLSTFEKERAWHVPEKLDLYAMQEACKVLVGHHDFSSFRAAGCQAKSPIRTLDELHVS 239

Query: 802  EVLPTPYFPSSVERGQFDSLQQAPLLNSCTSRVELPIKS-SIADHCVADSSNYISGVEFG 978
            E  PTPYFPS  E+ Q +S  +     S    ++LPI S S +D  V   SN I+ + FG
Sbjct: 240  EAPPTPYFPSISEKKQNNSSTEDSHACSREPEIDLPIDSFSNSDDEV--GSNGITDLGFG 297

Query: 979  QRRRHRCYVITARARSFLYHQVRLLVGVLKSVGTGDLTPDDVQRILEAKNVAAASPMAPA 1158
             RRRH CYV+TARARSFLYHQVRLLVGVLK VGTG+LT  DV+RIL AK V AASPMAPA
Sbjct: 298  IRRRHHCYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERILNAKTVTAASPMAPA 357

Query: 1159 CGLYLGRVKYDLP 1197
             GLYLG VKYDLP
Sbjct: 358  YGLYLGCVKYDLP 370


>ref|XP_006349329.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Solanum
            tuberosum]
          Length = 389

 Score =  501 bits (1289), Expect = e-139
 Identities = 255/373 (68%), Positives = 303/373 (81%), Gaps = 5/373 (1%)
 Frame = +1

Query: 94   KRFLESPTELPIEKPSKIAKTDSDNLSDE-EKEELKNQ--QVMNQNPRLQRYLVAIEYIG 264
            K  L+   E P ++PSK  K + D  +D  E EE K    + MN NPRLQRYL+AIEYIG
Sbjct: 15   KHSLDQRPESP-QRPSKFPKVNDDAGNDVLEGEEQKESVTRTMNPNPRLQRYLIAIEYIG 73

Query: 265  TRFSGSQKQPNFRTVVGVLEEAFHKFIGQPVSILCSSRTDAGVHALSNVCHVDIERISKR 444
            TRF+G+Q+QPN RTVVGVL+EAF KF+GQPVS+ CSSRTDAGVHALSNVCHVD+ERISKR
Sbjct: 74   TRFAGAQQQPNCRTVVGVLQEAFQKFVGQPVSVFCSSRTDAGVHALSNVCHVDVERISKR 133

Query: 445  KPGELLPPHEPGVVRRAVNHFLQKNEGDIVVIDVRCIPADFHARHKARERIYFYRLLSGP 624
            KPG++LPPHEP VV+RAVNHFLQKNEGDI+VIDVRC+PADFHAR+KA+ER YFYRLLSGP
Sbjct: 134  KPGDVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRCVPADFHARYKAQERTYFYRLLSGP 193

Query: 625  ESLSTFEKDRAWHIPEEVDVVAMQKACKILMGQHDFSSFRAAGCQAKSPIRTLDELNVTE 804
            ES+S+FE+DRAWH+PE +D++AMQKAC IL+G+HDFSSFRAA CQA SPIRTLDELNV E
Sbjct: 194  ESVSSFERDRAWHVPENLDLLAMQKACNILIGRHDFSSFRAAACQANSPIRTLDELNVIE 253

Query: 805  VLPTPYFPSSVERGQFDSLQQAPL--LNSCTSRVELPIKSSIADHCVADSSNYISGVEFG 978
            V+ TP+FPS  ER +  S+ + P   L S T+  ++ + ++       + SN  +  EFG
Sbjct: 254  VVSTPFFPSISERLKSSSVMEDPTVSLGSDTNHSQISLNTNEEK---LEGSNGEACQEFG 310

Query: 979  QRRRHRCYVITARARSFLYHQVRLLVGVLKSVGTGDLTPDDVQRILEAKNVAAASPMAPA 1158
             RRRHRC+V+TARARSFLYHQVRLLVGVLKSVG G LT  DV+RILEAK++ AA PMAPA
Sbjct: 311  LRRRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGVLTDPDVKRILEAKSITAAPPMAPA 370

Query: 1159 CGLYLGRVKYDLP 1197
            CGLYLG VKYDLP
Sbjct: 371  CGLYLGHVKYDLP 383


>ref|XP_004230453.1| PREDICTED: tRNA pseudouridine synthase A-like [Solanum lycopersicum]
          Length = 389

 Score =  500 bits (1287), Expect = e-139
 Identities = 253/373 (67%), Positives = 302/373 (80%), Gaps = 5/373 (1%)
 Frame = +1

Query: 94   KRFLESPTELPIEKPSKIAKTDSDNLSDEEKEELKNQQV---MNQNPRLQRYLVAIEYIG 264
            K  L+   E P ++PSK+ K + D  +D  + E + + V   MN NPRLQRYL+AIEYIG
Sbjct: 15   KHSLDQRPESP-QRPSKLPKVNDDGGNDVVEGEEQKESVTRTMNPNPRLQRYLLAIEYIG 73

Query: 265  TRFSGSQKQPNFRTVVGVLEEAFHKFIGQPVSILCSSRTDAGVHALSNVCHVDIERISKR 444
            TRF+G+Q+QPN RTVVGVL+EAF KFIGQPVS+ CSSRTDAGVHALSNVCHVD+ERISKR
Sbjct: 74   TRFAGAQQQPNCRTVVGVLQEAFQKFIGQPVSVFCSSRTDAGVHALSNVCHVDVERISKR 133

Query: 445  KPGELLPPHEPGVVRRAVNHFLQKNEGDIVVIDVRCIPADFHARHKARERIYFYRLLSGP 624
            KPG++LPPHEP VV+RAVNHFLQKN GDI+VIDVRC+P DFHAR+KA+ER YFYRLLSGP
Sbjct: 134  KPGDVLPPHEPLVVKRAVNHFLQKNAGDIMVIDVRCVPDDFHARYKAQERTYFYRLLSGP 193

Query: 625  ESLSTFEKDRAWHIPEEVDVVAMQKACKILMGQHDFSSFRAAGCQAKSPIRTLDELNVTE 804
            E +S+FE+DRAWH+PE +D++AMQKAC IL+G+HDFSSFRAA CQA SPIRTLDELNV E
Sbjct: 194  EPVSSFERDRAWHVPENLDLLAMQKACNILIGRHDFSSFRAAACQANSPIRTLDELNVIE 253

Query: 805  VLPTPYFPSSVERGQFDSLQQAP--LLNSCTSRVELPIKSSIADHCVADSSNYISGVEFG 978
            V+ TP+FPS  ER +  S+ + P   L S T+  ++   ++       + SN  +  EFG
Sbjct: 254  VVSTPFFPSISERLKSSSVMEDPTVYLGSDTNHSQISFNTNEGK---LEGSNGEACQEFG 310

Query: 979  QRRRHRCYVITARARSFLYHQVRLLVGVLKSVGTGDLTPDDVQRILEAKNVAAASPMAPA 1158
             RRRHRC+V+TARARSFLYHQVRLLVGVLKSVG GDLT  DV+RILEAK++AAA PMAPA
Sbjct: 311  LRRRHRCFVVTARARSFLYHQVRLLVGVLKSVGAGDLTDPDVKRILEAKSIAAAPPMAPA 370

Query: 1159 CGLYLGRVKYDLP 1197
            CGLYLG VKYDLP
Sbjct: 371  CGLYLGHVKYDLP 383


>ref|XP_004485453.1| PREDICTED: tRNA pseudouridine synthase A-like isoform X1 [Cicer
            arietinum]
          Length = 374

 Score =  493 bits (1268), Expect = e-136
 Identities = 254/375 (67%), Positives = 302/375 (80%), Gaps = 5/375 (1%)
 Frame = +1

Query: 88   DPKRFLESPTELPIEKPSKIAKTDSDNLS---DEEKEELKNQQVMNQNPRLQRYLVAIEY 258
            +PK  +E        +PSKI+K +  N S    E++EE + ++ MNQ+ R+QRYLVAIEY
Sbjct: 4    NPKHTVEIDECSDNNRPSKISKIEYPNPSYHDGEQEEEEEQKEGMNQHRRIQRYLVAIEY 63

Query: 259  IGTRFSGSQKQPNFRTVVGVLEEAFHKFIGQPVSILCSSRTDAGVHALSNVCHVDIERIS 438
            IGT FSGSQKQ   RTVVGVLEEAF KF+GQPVS++CSSRTDAGVHALSNVCHVDIERIS
Sbjct: 64   IGTHFSGSQKQLTDRTVVGVLEEAFCKFVGQPVSVICSSRTDAGVHALSNVCHVDIERIS 123

Query: 439  KRKPGELLPPHEPGVVRRAVNHFLQKNEGDIVVIDVRCIPADFHARHKARERIYFYRLLS 618
            KRKPGE+LPPHEP VVRRAVNHFLQK  GD++VIDVRC+P+DFHAR+KA+ER YFYRLLS
Sbjct: 124  KRKPGEVLPPHEPVVVRRAVNHFLQKQNGDLMVIDVRCVPSDFHARYKAQERTYFYRLLS 183

Query: 619  GPESLSTFEKDRAWHIPEEVDVVAMQKACKILMGQHDFSSFRAAGCQAKSPIRTLDELNV 798
            G E LST EKDRAWH+PEE+++ AMQ+AC++L+G HDFSSFRAAGCQAKSPIRTLDEL+V
Sbjct: 184  GSEPLSTLEKDRAWHVPEELNLPAMQEACRVLVGHHDFSSFRAAGCQAKSPIRTLDELSV 243

Query: 799  TEVLPTPYFPSSVERGQFDSLQQAPLLNSCTSRVE--LPIKSSIADHCVADSSNYISGVE 972
             EV+ +PYFPS ++R +   ++ A  L+ C S  E  +P+ SS     V  S+    GV 
Sbjct: 244  VEVIQSPYFPSVMDRER--QIKVADDLHGCGSNAEAVIPVSSSARIDKVRASN---EGVG 298

Query: 973  FGQRRRHRCYVITARARSFLYHQVRLLVGVLKSVGTGDLTPDDVQRILEAKNVAAASPMA 1152
            FG+RR HRC V+TARAR+FLYHQVRLLVGVLK+VGTG+LT  DV+RIL AK V AASPMA
Sbjct: 299  FGKRRYHRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTIPDVERILNAKTVTAASPMA 358

Query: 1153 PACGLYLGRVKYDLP 1197
            PACGLYLG VKYDLP
Sbjct: 359  PACGLYLGEVKYDLP 373


>ref|XP_006389535.1| hypothetical protein POPTR_0022s00690g [Populus trichocarpa]
            gi|550312358|gb|ERP48449.1| hypothetical protein
            POPTR_0022s00690g [Populus trichocarpa]
          Length = 370

 Score =  492 bits (1267), Expect = e-136
 Identities = 250/361 (69%), Positives = 289/361 (80%)
 Frame = +1

Query: 109  SPTELPIEKPSKIAKTDSDNLSDEEKEELKNQQVMNQNPRLQRYLVAIEYIGTRFSGSQK 288
            SP E P E+PSKI+KT  +     E+EE K     +  P LQRYLVA+EYIGTRF GSQ+
Sbjct: 9    SPEESPNERPSKISKTLQEEGDSSEEEEEKEAVDKSMKPGLQRYLVAVEYIGTRFCGSQQ 68

Query: 289  QPNFRTVVGVLEEAFHKFIGQPVSILCSSRTDAGVHALSNVCHVDIERISKRKPGELLPP 468
            Q N RTVVGVL+EAFHKFIGQPV+I  SSRTDAGVHALSNVCHVD+ERISKRKPGE+LPP
Sbjct: 69   QLNHRTVVGVLQEAFHKFIGQPVTICLSSRTDAGVHALSNVCHVDVERISKRKPGEVLPP 128

Query: 469  HEPGVVRRAVNHFLQKNEGDIVVIDVRCIPADFHARHKARERIYFYRLLSGPESLSTFEK 648
            HEP VVR+AVNHFLQK EGDI+V DVR +PA FHAR KA+ER YFYRLL GPE LSTFEK
Sbjct: 129  HEPAVVRKAVNHFLQKKEGDIMVTDVRSVPAHFHARFKAQERTYFYRLLIGPELLSTFEK 188

Query: 649  DRAWHIPEEVDVVAMQKACKILMGQHDFSSFRAAGCQAKSPIRTLDELNVTEVLPTPYFP 828
            DRAWH+ EE+D+V+MQ+ACK+L+G HDFSSFRA+GCQAKSP RTL+EL+V EV+ TPYFP
Sbjct: 189  DRAWHVSEELDLVSMQEACKVLVGHHDFSSFRASGCQAKSPFRTLEELSVLEVVSTPYFP 248

Query: 829  SSVERGQFDSLQQAPLLNSCTSRVELPIKSSIADHCVADSSNYISGVEFGQRRRHRCYVI 1008
            S  ER Q  S  + P       +  LP   SI++  +A  SN  + + FG RRRHRCYVI
Sbjct: 249  SITEREQNSSNGEGPHSFHNKCKTGLP-TGSISNGFMAGGSNSGTDLGFGIRRRHRCYVI 307

Query: 1009 TARARSFLYHQVRLLVGVLKSVGTGDLTPDDVQRILEAKNVAAASPMAPACGLYLGRVKY 1188
            TAR+RSFLYHQVRLLVGVLKSVGTGDLT  DV+RIL A+++ AASPMAPACGLYLG VKY
Sbjct: 308  TARSRSFLYHQVRLLVGVLKSVGTGDLTVSDVERILNARSITAASPMAPACGLYLGHVKY 367

Query: 1189 D 1191
            +
Sbjct: 368  E 368


>ref|XP_004161929.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 352

 Score =  486 bits (1252), Expect = e-135
 Identities = 242/368 (65%), Positives = 286/368 (77%)
 Frame = +1

Query: 94   KRFLESPTELPIEKPSKIAKTDSDNLSDEEKEELKNQQVMNQNPRLQRYLVAIEYIGTRF 273
            K  LE   +   ++P KI KT  +    +E+E     + MN  P +QRYLVA+EYIGTRF
Sbjct: 6    KHGLELSIDSSSQRPLKIGKTTDELFHGDEEEA----ETMNPKPGIQRYLVAVEYIGTRF 61

Query: 274  SGSQKQPNFRTVVGVLEEAFHKFIGQPVSILCSSRTDAGVHALSNVCHVDIERISKRKPG 453
             GSQ+QPN RTVVG LEEAF KFIGQPVS+ CSSRTDAGVHALSNVCHVD+ERISKRKPG
Sbjct: 62   YGSQQQPNCRTVVGALEEAFQKFIGQPVSVFCSSRTDAGVHALSNVCHVDVERISKRKPG 121

Query: 454  ELLPPHEPGVVRRAVNHFLQKNEGDIVVIDVRCIPADFHARHKARERIYFYRLLSGPESL 633
            E+LPPHEPGVV +AVNHFLQK+EGD+ V+DVR +P DFHAR+KA+ER YFYRL+SGPE+L
Sbjct: 122  EVLPPHEPGVVHKAVNHFLQKHEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPEAL 181

Query: 634  STFEKDRAWHIPEEVDVVAMQKACKILMGQHDFSSFRAAGCQAKSPIRTLDELNVTEVLP 813
            S+FEKDRAWH+PE +++ AMQ+ACK+L+G HDFSSFRAAGCQA SPIRTLDELNV EV  
Sbjct: 182  SSFEKDRAWHVPETLNIGAMQEACKVLVGHHDFSSFRAAGCQANSPIRTLDELNVCEVAS 241

Query: 814  TPYFPSSVERGQFDSLQQAPLLNSCTSRVELPIKSSIADHCVADSSNYISGVEFGQRRRH 993
            TPYFP+S+ER Q    +++ +   C+   E                     V FG RRRH
Sbjct: 242  TPYFPTSMERKQRQGKEESEIEVPCSETCE---------------------VGFGIRRRH 280

Query: 994  RCYVITARARSFLYHQVRLLVGVLKSVGTGDLTPDDVQRILEAKNVAAASPMAPACGLYL 1173
            RC+V+TARARSFLYHQVRL+VGVLK+VG+GDLT  DV RILEAKNV++A PMAPACGLYL
Sbjct: 281  RCFVVTARARSFLYHQVRLMVGVLKAVGSGDLTVGDVGRILEAKNVSSARPMAPACGLYL 340

Query: 1174 GRVKYDLP 1197
            G VKYDLP
Sbjct: 341  GHVKYDLP 348


>ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Glycine max]
          Length = 369

 Score =  485 bits (1248), Expect = e-134
 Identities = 247/360 (68%), Positives = 292/360 (81%), Gaps = 5/360 (1%)
 Frame = +1

Query: 133  KPSKIAKTDSDNLSDEEKEELKNQQVMNQNPR--LQRYLVAIEYIGTRFSGSQKQPNFRT 306
            +PSKI+K +  + SD ++EE    + M+QNPR  +QRYLVAIEYIGT FSGSQKQ N RT
Sbjct: 18   RPSKISKIEYPSDSDIDEEE----EGMSQNPRNGIQRYLVAIEYIGTLFSGSQKQLNVRT 73

Query: 307  VVGVLEEAFHKFIGQPVSILCSSRTDAGVHALSNVCHVDIERISKRKPGELLPPHEPGVV 486
            VVG LEEAF KF+GQPVS+ CSSRTDAGVHALSNVCHVDI+RISKR+PGE+LPPHEP VV
Sbjct: 74   VVGALEEAFSKFVGQPVSVSCSSRTDAGVHALSNVCHVDIQRISKRRPGEVLPPHEPAVV 133

Query: 487  RRAVNHFLQKNEGDIVVIDVRCIPADFHARHKARERIYFYRLLSGPESLSTFEKDRAWHI 666
             RAVNHFLQK++ D++VIDVRC+P+DFHAR KA+ER YFYRLLSGPE LSTFEKDRAWH+
Sbjct: 134  GRAVNHFLQKHDSDLMVIDVRCVPSDFHARFKAQERTYFYRLLSGPEPLSTFEKDRAWHV 193

Query: 667  PEEVDVVAMQKACKILMGQHDFSSFRAAGCQAKSPIRTLDELNVTEVLPTPYFPSSVERG 846
            PEE+ + AMQ+AC++L+G HDFSSFRAAGCQAKSPIRTLDEL+V EV+ +PYFPS ++R 
Sbjct: 194  PEELSLPAMQEACRVLVGCHDFSSFRAAGCQAKSPIRTLDELSVNEVIESPYFPSLMDRE 253

Query: 847  QFDSLQQAPLLNSCTSRVEL---PIKSSIADHCVADSSNYISGVEFGQRRRHRCYVITAR 1017
            Q + +     L SC++  E    PI +   D  +  S +      FG+RRRHRC V+TAR
Sbjct: 254  QHNKVSGD--LRSCSNNTETDIPPISNPSIDKVITSSQD----AGFGKRRRHRCLVVTAR 307

Query: 1018 ARSFLYHQVRLLVGVLKSVGTGDLTPDDVQRILEAKNVAAASPMAPACGLYLGRVKYDLP 1197
            ARSFLYHQVRLLVGVLK+ GTG+LT  DV+RIL AK V AASPMAPACGLYLG VKYDLP
Sbjct: 308  ARSFLYHQVRLLVGVLKAAGTGNLTIPDVERILNAKTVTAASPMAPACGLYLGEVKYDLP 367


>ref|XP_004309887.1| PREDICTED: tRNA pseudouridine synthase A-like [Fragaria vesca subsp.
            vesca]
          Length = 350

 Score =  483 bits (1242), Expect = e-133
 Identities = 254/368 (69%), Positives = 291/368 (79%)
 Frame = +1

Query: 94   KRFLESPTELPIEKPSKIAKTDSDNLSDEEKEELKNQQVMNQNPRLQRYLVAIEYIGTRF 273
            K  LES ++ P ++PSKI+KT S+    E          M++   +QRYL+AIEYIGTRF
Sbjct: 6    KHSLESRSQSP-KRPSKISKTTSEEAEAES---------MSKPQGIQRYLIAIEYIGTRF 55

Query: 274  SGSQKQPNFRTVVGVLEEAFHKFIGQPVSILCSSRTDAGVHALSNVCHVDIERISKRKPG 453
            SGSQ+Q N RTVVGVLEEAF KFIGQPVSI CSSRTDAGVHALSNVCHVDIERISKRKPG
Sbjct: 56   SGSQQQSNCRTVVGVLEEAFRKFIGQPVSIFCSSRTDAGVHALSNVCHVDIERISKRKPG 115

Query: 454  ELLPPHEPGVVRRAVNHFLQKNEGDIVVIDVRCIPADFHARHKARERIYFYRLLSGPESL 633
            E+LPPHEP VV+RAVNHFLQKNEGD++V+DVR +PADFHAR KA+ER YFYRLLSGPE L
Sbjct: 116  EVLPPHEPIVVQRAVNHFLQKNEGDVMVVDVRSVPADFHARFKAQERTYFYRLLSGPEPL 175

Query: 634  STFEKDRAWHIPEEVDVVAMQKACKILMGQHDFSSFRAAGCQAKSPIRTLDELNVTEVLP 813
            STFEKDRAWHIPEE+DV+AMQ+ACKIL+G HDFSSFRAAGCQAKSPIRTLDELNV+EV+ 
Sbjct: 176  STFEKDRAWHIPEELDVLAMQEACKILVGHHDFSSFRAAGCQAKSPIRTLDELNVSEVVS 235

Query: 814  TPYFPSSVERGQFDSLQQAPLLNSCTSRVELPIKSSIADHCVADSSNYISGVEFGQRRRH 993
            +P FP+  ER +  +L Q  +   CT+  E    SS          N  +   FG R++H
Sbjct: 236  SPNFPTIAERTR--NLVQKDI--QCTNNPEADCHSSF---------NGGTDQGFGLRKKH 282

Query: 994  RCYVITARARSFLYHQVRLLVGVLKSVGTGDLTPDDVQRILEAKNVAAASPMAPACGLYL 1173
            RC V+TARAR+FLYHQVRLLVGVLK VGTGDL   DV+RIL AK V AASPMAPACGLYL
Sbjct: 283  RCIVVTARARAFLYHQVRLLVGVLKCVGTGDLKIPDVERILNAKTVTAASPMAPACGLYL 342

Query: 1174 GRVKYDLP 1197
            G V+YDLP
Sbjct: 343  GHVRYDLP 350


>ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223534233|gb|EEF35948.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 372

 Score =  481 bits (1239), Expect = e-133
 Identities = 255/377 (67%), Positives = 302/377 (80%), Gaps = 7/377 (1%)
 Frame = +1

Query: 88   DPKRFLESPTELPIEKPSKIAKT-DSDNLSDEEKEELKNQ----QVMNQNPRLQRYLVAI 252
            +PK  L++ +     +PSKI KT D  + ++E +EEL+      + M+ NP+LQRYL+A+
Sbjct: 4    NPKHSLDTESR---NRPSKILKTQDFVDDNEEGEEELQESSFVAESMSSNPKLQRYLIAV 60

Query: 253  EYIGTRFSGSQKQPNFRTVVGVLEEAFHKFIGQPVSILCSSRTDAGVHALSNVCHVDIER 432
            EYIGT+F+GSQKQ N RTVVGVLEEAF KFIGQ VS+  SSRTDAGVHALSNVCHVDIER
Sbjct: 61   EYIGTKFAGSQKQLNGRTVVGVLEEAFCKFIGQQVSVSLSSRTDAGVHALSNVCHVDIER 120

Query: 433  ISKRKPGELLPPHEPGVVRRAVNHFLQKNEGDIVVIDVRCIPADFHARHKARERIYFYRL 612
            ISKRKPGE+LPPHEP VVRRAVNHFLQKNEGDI+V DVRC+P+DFHAR KA+ER YFYR 
Sbjct: 121  ISKRKPGEVLPPHEPAVVRRAVNHFLQKNEGDIMVTDVRCVPSDFHARFKAQERTYFYRF 180

Query: 613  LSGPESLSTFEKDRAWHIPEEVDVVAMQKACKILMGQHDFSSFRAAGCQAKSPIRTLDEL 792
            LSGPE LSTFEKDRAWH+ E++D+VAMQ+ACK+L+G HDFSSFRA+GCQAKSPIRTL E+
Sbjct: 181  LSGPEPLSTFEKDRAWHVLEDLDIVAMQEACKVLVGHHDFSSFRASGCQAKSPIRTLAEI 240

Query: 793  NVTEVLPTPYFPSSVERGQFDSLQQAPLLNSCTS--RVELPIKSSIADHCVADSSNYISG 966
            +V+EV  T YFPS  ER Q     +    NSC    + +LP+  S ++  VA+SS   + 
Sbjct: 241  SVSEVASTLYFPSITEREQNCENGE----NSCCKKFKTDLPM-GSHSNTNVAESSFGETD 295

Query: 967  VEFGQRRRHRCYVITARARSFLYHQVRLLVGVLKSVGTGDLTPDDVQRILEAKNVAAASP 1146
            + FG RRRHRC+V+TARARSFLYHQVRLLVGVLKSVG GDLT  DV+RIL AK+V AASP
Sbjct: 296  LGFGIRRRHRCFVVTARARSFLYHQVRLLVGVLKSVGIGDLTTSDVERILSAKSVTAASP 355

Query: 1147 MAPACGLYLGRVKYDLP 1197
            MAPA GLYLG VKYDLP
Sbjct: 356  MAPARGLYLGHVKYDLP 372


>ref|XP_006663893.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Oryza
            brachyantha]
          Length = 397

 Score =  481 bits (1238), Expect = e-133
 Identities = 251/371 (67%), Positives = 287/371 (77%)
 Frame = +1

Query: 82   PGDPKRFLESPTELPIEKPSKIAKTDSDNLSDEEKEELKNQQVMNQNPRLQRYLVAIEYI 261
            P  P +   S    P   P++ A+ D+ N   E  E  + +     NPR QRYLVA+EYI
Sbjct: 29   PSPPAKVPRSSQPDPCPSPAE-ARGDAAN-GGEVAEGSREEMAGAWNPRAQRYLVAVEYI 86

Query: 262  GTRFSGSQKQPNFRTVVGVLEEAFHKFIGQPVSILCSSRTDAGVHALSNVCHVDIERISK 441
            GTRFSGSQ+QPN RTVVGVLEEAFHKFIGQPVSI CSSRTDAGVHALSNVCHVD+ERISK
Sbjct: 87   GTRFSGSQQQPNQRTVVGVLEEAFHKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISK 146

Query: 442  RKPGELLPPHEPGVVRRAVNHFLQKNEGDIVVIDVRCIPADFHARHKARERIYFYRLLSG 621
            RKPGE+LPPHEPGVV+RAVNHFLQKNEGDI+V DV C+  DFHAR+KA ER Y YRLLSG
Sbjct: 147  RKPGEVLPPHEPGVVKRAVNHFLQKNEGDIMVTDVCCVAPDFHARYKALERTYHYRLLSG 206

Query: 622  PESLSTFEKDRAWHIPEEVDVVAMQKACKILMGQHDFSSFRAAGCQAKSPIRTLDELNVT 801
             E LS FEK  AWHI E+++V AM+KAC IL+G HDFSSFRAAGCQA SP+RTLDEL VT
Sbjct: 207  SEPLSVFEKSSAWHIAEDLNVQAMKKACSILVGHHDFSSFRAAGCQANSPMRTLDELTVT 266

Query: 802  EVLPTPYFPSSVERGQFDSLQQAPLLNSCTSRVELPIKSSIADHCVADSSNYISGVEFGQ 981
            EV P+ +FPSS+ER   + L   PL+ S TS VE   K S A +  ++ S   SG EFG+
Sbjct: 267  EVFPSMFFPSSLERSDMEPL-DGPLIYSRTSVVESSGKGSDASNTTSE-SRCESGGEFGK 324

Query: 982  RRRHRCYVITARARSFLYHQVRLLVGVLKSVGTGDLTPDDVQRILEAKNVAAASPMAPAC 1161
            R RHRC+V+TARARSFLYHQVRL+VG+LKSVGTGDLT  DV+RIL +K V AA PMAPAC
Sbjct: 325  RLRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVERILNSKTVTAAPPMAPAC 384

Query: 1162 GLYLGRVKYDL 1194
            GLYL  VKYDL
Sbjct: 385  GLYLANVKYDL 395


>ref|XP_007148561.1| hypothetical protein PHAVU_006G218900g [Phaseolus vulgaris]
            gi|561021784|gb|ESW20555.1| hypothetical protein
            PHAVU_006G218900g [Phaseolus vulgaris]
          Length = 373

 Score =  478 bits (1231), Expect = e-132
 Identities = 238/357 (66%), Positives = 284/357 (79%), Gaps = 2/357 (0%)
 Frame = +1

Query: 133  KPSKIAKTDSDNLSDEEKEELKNQQVMNQNPR--LQRYLVAIEYIGTRFSGSQKQPNFRT 306
            +PSK++K +       E +E + ++ M QNPR  +QRY +AIEYIGTRFSGSQKQ   RT
Sbjct: 18   RPSKLSKIEHSTHIAHEDDEEEEEKEMTQNPRNGIQRYFLAIEYIGTRFSGSQKQLTCRT 77

Query: 307  VVGVLEEAFHKFIGQPVSILCSSRTDAGVHALSNVCHVDIERISKRKPGELLPPHEPGVV 486
            VVG LEEAF KF+G PVS+ CSSRTDAGVHALSNVCHVDI+R SKRKPGE+LPPHEP VV
Sbjct: 78   VVGALEEAFAKFVGHPVSVSCSSRTDAGVHALSNVCHVDIQRTSKRKPGEVLPPHEPAVV 137

Query: 487  RRAVNHFLQKNEGDIVVIDVRCIPADFHARHKARERIYFYRLLSGPESLSTFEKDRAWHI 666
             RAVNHFLQK++ D+ VIDVRC+P+DFHAR+KA ER YFYRLLSGPE LSTFEKDRAWH+
Sbjct: 138  GRAVNHFLQKHDSDLTVIDVRCVPSDFHARYKALERTYFYRLLSGPEPLSTFEKDRAWHV 197

Query: 667  PEEVDVVAMQKACKILMGQHDFSSFRAAGCQAKSPIRTLDELNVTEVLPTPYFPSSVERG 846
             EE+++ AMQ+AC++L+G HDFSSFRAAGCQAKSPIRTLDELNV+EV+ + +FPS ++R 
Sbjct: 198  SEELNLPAMQEACRVLVGSHDFSSFRAAGCQAKSPIRTLDELNVSEVIESLHFPSVMDRE 257

Query: 847  QFDSLQQAPLLNSCTSRVELPIKSSIADHCVADSSNYISGVEFGQRRRHRCYVITARARS 1026
              D +   P      S  ++P  SS    C+   +     V FG+RRRHRC V+TARARS
Sbjct: 258  GHDKVSSDPRSYPSNSETDIPPSSS---PCIDKVTTSSEDVGFGKRRRHRCLVVTARARS 314

Query: 1027 FLYHQVRLLVGVLKSVGTGDLTPDDVQRILEAKNVAAASPMAPACGLYLGRVKYDLP 1197
            FLYHQVRLLVGVLK+VGTG+LT  DV+RIL AK+V +ASPMAPACGLYLG VKYDLP
Sbjct: 315  FLYHQVRLLVGVLKAVGTGNLTIPDVERILNAKSVTSASPMAPACGLYLGEVKYDLP 371


>ref|XP_004977156.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Setaria italica]
          Length = 385

 Score =  478 bits (1230), Expect = e-132
 Identities = 237/327 (72%), Positives = 270/327 (82%), Gaps = 1/327 (0%)
 Frame = +1

Query: 217  QNPRLQRYLVAIEYIGTRFSGSQKQPNFRTVVGVLEEAFHKFIGQPVSILCSSRTDAGVH 396
            +NPR QRYLVA+EY+GTRFSGSQ+QPN RTVVGVLEEAFHKFIGQPVSI CSSRTDAGVH
Sbjct: 59   RNPRAQRYLVAVEYVGTRFSGSQQQPNQRTVVGVLEEAFHKFIGQPVSIFCSSRTDAGVH 118

Query: 397  ALSNVCHVDIERISKRKPGELLPPHEPGVVRRAVNHFLQKNEGDIVVIDVRCIPADFHAR 576
            ALSN+CHVD+ERISKRKPGE+L PHEPGVV+RAVNHFLQ+NEGDI+V DVRC+  DFHAR
Sbjct: 119  ALSNICHVDVERISKRKPGEVLTPHEPGVVKRAVNHFLQRNEGDIMVTDVRCVAPDFHAR 178

Query: 577  HKARERIYFYRLLSGPESLSTFEKDRAWHIPEEVDVVAMQKACKILMGQHDFSSFRAAGC 756
            +KA ER Y YRLLSGPES S FEK+ AWHI E++D+ AM+KAC IL+G HDFSSFRAAGC
Sbjct: 179  YKALERTYHYRLLSGPESTSVFEKNSAWHISEDLDIQAMKKACSILVGHHDFSSFRAAGC 238

Query: 757  QAKSPIRTLDELNVTEVLPTPYFPSSVERGQFDSLQQAPLLNSCTSRVELPIKSSIADHC 936
            QA SP+RTLDELNVTEV P  +FPSS+ER + +S     L+ S T  +E P +    D C
Sbjct: 239  QANSPMRTLDELNVTEVFPFMFFPSSIERSEMES-SDGSLIYSRTPALE-PSRKESDDSC 296

Query: 937  VAD-SSNYISGVEFGQRRRHRCYVITARARSFLYHQVRLLVGVLKSVGTGDLTPDDVQRI 1113
             +   S   +G EFG R RHRC+V+TARARSFLYHQVRL+VG+LKSVGTGDLT  DV+RI
Sbjct: 297  TSSGKSESENGKEFGSRLRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVERI 356

Query: 1114 LEAKNVAAASPMAPACGLYLGRVKYDL 1194
            L AK V AA PMAPACGLYL  VKYDL
Sbjct: 357  LNAKKVTAAPPMAPACGLYLANVKYDL 383


>gb|EEC68990.1| hypothetical protein OsI_37759 [Oryza sativa Indica Group]
          Length = 391

 Score =  477 bits (1228), Expect = e-132
 Identities = 247/380 (65%), Positives = 289/380 (76%), Gaps = 6/380 (1%)
 Frame = +1

Query: 73   SRNPGDPKRFLESP------TELPIEKPSKIAKTDSDNLSDEEKEELKNQQVMNQNPRLQ 234
            ++ P DP     SP      +  P   P   A+ D+ +   E       +    +NP+ Q
Sbjct: 12   AKRPIDPSHADPSPAAKLQRSSPPDPSPPAEAQGDTTDGGGEVAGVRSGEMAGARNPQAQ 71

Query: 235  RYLVAIEYIGTRFSGSQKQPNFRTVVGVLEEAFHKFIGQPVSILCSSRTDAGVHALSNVC 414
            RYLVA+EY+GTRFSGSQ+Q N RTVVGVLEEAFHKFIGQPVSI CSSRTD GVHALSNVC
Sbjct: 72   RYLVAVEYVGTRFSGSQQQLNQRTVVGVLEEAFHKFIGQPVSIFCSSRTDTGVHALSNVC 131

Query: 415  HVDIERISKRKPGELLPPHEPGVVRRAVNHFLQKNEGDIVVIDVRCIPADFHARHKARER 594
            HVD+ERISKRKPGE+LPPHEPGVV+RAVNHFLQKNEGDI+V DVRC+  DFHAR+KA ER
Sbjct: 132  HVDVERISKRKPGEMLPPHEPGVVKRAVNHFLQKNEGDIMVTDVRCVAPDFHARYKALER 191

Query: 595  IYFYRLLSGPESLSTFEKDRAWHIPEEVDVVAMQKACKILMGQHDFSSFRAAGCQAKSPI 774
             Y YRLLSG E LS FEK  AWHIPE+++V AM+KAC IL+G HDFSSFRA GCQA SP+
Sbjct: 192  TYHYRLLSGSEPLSVFEKTSAWHIPEDLNVQAMKKACSILVGHHDFSSFRATGCQANSPM 251

Query: 775  RTLDELNVTEVLPTPYFPSSVERGQFDSLQQAPLLNSCTSRVELPIKSSIADHCVADSSN 954
            RTLDEL+VTEV P+ +FPSS+ER + +SL    L+ S TS VE   K S A    ++ S 
Sbjct: 252  RTLDELSVTEVFPSMFFPSSMERSEMESL-DGHLVYSRTSVVESSGKGSDAS-STSEQSR 309

Query: 955  YISGVEFGQRRRHRCYVITARARSFLYHQVRLLVGVLKSVGTGDLTPDDVQRILEAKNVA 1134
            + +G EFG+R RHRC+V+TARARSFLYHQVRL+VG+LKSVGTGDLT +DV+RIL  K V 
Sbjct: 310  FENGEEFGKRLRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTEDVERILNLKAVT 369

Query: 1135 AASPMAPACGLYLGRVKYDL 1194
            AA PMAPACGLYL  VKYDL
Sbjct: 370  AAPPMAPACGLYLANVKYDL 389


>ref|NP_001066352.1| Os12g0194800 [Oryza sativa Japonica Group]
            gi|108862288|gb|ABA96079.2| tRNA pseudouridine synthase
            family protein, putative, expressed [Oryza sativa
            Japonica Group] gi|113648859|dbj|BAF29371.1| Os12g0194800
            [Oryza sativa Japonica Group]
            gi|215678805|dbj|BAG95242.1| unnamed protein product
            [Oryza sativa Japonica Group] gi|222616774|gb|EEE52906.1|
            hypothetical protein OsJ_35509 [Oryza sativa Japonica
            Group]
          Length = 391

 Score =  477 bits (1228), Expect = e-132
 Identities = 247/380 (65%), Positives = 289/380 (76%), Gaps = 6/380 (1%)
 Frame = +1

Query: 73   SRNPGDPKRFLESP------TELPIEKPSKIAKTDSDNLSDEEKEELKNQQVMNQNPRLQ 234
            ++ P DP     SP      +  P   P   A+ D+ +   E       +    +NP+ Q
Sbjct: 12   AKRPIDPSHADPSPAAKLQRSSPPDPSPPAEAQGDATDGGGEVAGVRSGEMAGARNPQAQ 71

Query: 235  RYLVAIEYIGTRFSGSQKQPNFRTVVGVLEEAFHKFIGQPVSILCSSRTDAGVHALSNVC 414
            RYLVA+EY+GTRFSGSQ+Q N RTVVGVLEEAFHKFIGQPVSI CSSRTD GVHALSNVC
Sbjct: 72   RYLVAVEYVGTRFSGSQQQLNQRTVVGVLEEAFHKFIGQPVSIFCSSRTDTGVHALSNVC 131

Query: 415  HVDIERISKRKPGELLPPHEPGVVRRAVNHFLQKNEGDIVVIDVRCIPADFHARHKARER 594
            HVD+ERISKRKPGE+LPPHEPGVV+RAVNHFLQKNEGDI+V DVRC+  DFHAR+KA ER
Sbjct: 132  HVDVERISKRKPGEMLPPHEPGVVKRAVNHFLQKNEGDIMVTDVRCVAPDFHARYKALER 191

Query: 595  IYFYRLLSGPESLSTFEKDRAWHIPEEVDVVAMQKACKILMGQHDFSSFRAAGCQAKSPI 774
             Y YRLLSG E LS FEK  AWHIPE+++V AM+KAC IL+G HDFSSFRA GCQA SP+
Sbjct: 192  TYHYRLLSGSEPLSVFEKTSAWHIPEDLNVQAMKKACSILVGHHDFSSFRATGCQANSPM 251

Query: 775  RTLDELNVTEVLPTPYFPSSVERGQFDSLQQAPLLNSCTSRVELPIKSSIADHCVADSSN 954
            RTLDEL+VTEV P+ +FPSS+ER + +SL    L+ S TS VE   K S A    ++ S 
Sbjct: 252  RTLDELSVTEVFPSMFFPSSMERSEMESL-DGHLVYSRTSVVESSGKGSDAS-STSEQSR 309

Query: 955  YISGVEFGQRRRHRCYVITARARSFLYHQVRLLVGVLKSVGTGDLTPDDVQRILEAKNVA 1134
            + +G EFG+R RHRC+V+TARARSFLYHQVRL+VG+LKSVGTGDLT +DV+RIL  K V 
Sbjct: 310  FENGEEFGKRLRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTEDVERILNLKAVT 369

Query: 1135 AASPMAPACGLYLGRVKYDL 1194
            AA PMAPACGLYL  VKYDL
Sbjct: 370  AAPPMAPACGLYLANVKYDL 389


>ref|XP_006417534.1| hypothetical protein EUTSA_v10007981mg [Eutrema salsugineum]
            gi|557095305|gb|ESQ35887.1| hypothetical protein
            EUTSA_v10007981mg [Eutrema salsugineum]
          Length = 368

 Score =  477 bits (1227), Expect = e-132
 Identities = 243/369 (65%), Positives = 287/369 (77%), Gaps = 6/369 (1%)
 Frame = +1

Query: 109  SPTELPIEKPSKIAKTD--SDNLSDEEKEELKNQQV----MNQNPRLQRYLVAIEYIGTR 270
            S ++  +E+ SK+A+ D  SD    EE EE +   V    ++ NPR+QRYLVAIEYIGTR
Sbjct: 12   SASQESLERLSKVARFDGFSDEEEGEEAEERQGLVVSEPELSMNPRVQRYLVAIEYIGTR 71

Query: 271  FSGSQKQPNFRTVVGVLEEAFHKFIGQPVSILCSSRTDAGVHALSNVCHVDIERISKRKP 450
            FSGSQ+Q   RTVVGVL+EAFHKFIGQPV I CSSRTDAGVHALSNVCHVD+ERISKRKP
Sbjct: 72   FSGSQQQATDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNVCHVDVERISKRKP 131

Query: 451  GELLPPHEPGVVRRAVNHFLQKNEGDIVVIDVRCIPADFHARHKARERIYFYRLLSGPES 630
            GE+LPPHEPGVV+RAVNHFLQ+N+GD++VIDVRC+P+++HAR+KARER YFYRLLSG + 
Sbjct: 132  GEVLPPHEPGVVQRAVNHFLQRNDGDVMVIDVRCVPSNYHARYKARERTYFYRLLSGSDP 191

Query: 631  LSTFEKDRAWHIPEEVDVVAMQKACKILMGQHDFSSFRAAGCQAKSPIRTLDELNVTEVL 810
            LS  EKDRAWH+PEE+D+ +MQ+AC++L+G HDFSSFRAAGCQAKSPIR+LDELNVTEV 
Sbjct: 192  LSILEKDRAWHVPEELDLRSMQEACRVLVGTHDFSSFRAAGCQAKSPIRSLDELNVTEVP 251

Query: 811  PTPYFPSSVERGQFDSLQQAPLLNSCTSRVELPIKSSIADHCVADSSNYISGVEFGQRRR 990
             TPYFPS  ER         PL  +C+S+ +        D           G  FG RRR
Sbjct: 252  STPYFPSITERTPSYLNNGDPL--ACSSQAKTETAGVSTD----------GGDTFGVRRR 299

Query: 991  HRCYVITARARSFLYHQVRLLVGVLKSVGTGDLTPDDVQRILEAKNVAAASPMAPACGLY 1170
            HRCYV+TAR R+FLYHQVRLLV  LK VGTG+LT  DV+RIL+AK V AA PMAPACGLY
Sbjct: 300  HRCYVVTARGRAFLYHQVRLLVAALKCVGTGELTVSDVERILKAKTVTAAKPMAPACGLY 359

Query: 1171 LGRVKYDLP 1197
            L RVKY+ P
Sbjct: 360  LARVKYEFP 368


>ref|NP_001242177.1| uncharacterized protein LOC100799818 [Glycine max]
            gi|255637177|gb|ACU18919.1| unknown [Glycine max]
          Length = 370

 Score =  476 bits (1224), Expect = e-131
 Identities = 244/360 (67%), Positives = 288/360 (80%), Gaps = 3/360 (0%)
 Frame = +1

Query: 127  IEKPSKIAKTDSDNLSDEEKEELKNQQVMNQNPRLQRYLVAIEYIGTRFSGSQKQPNFRT 306
            I +PSKI+  +    SD ++EE   + + N    +QRYLVAIEYIGTRFSGSQKQ N RT
Sbjct: 18   INRPSKISIIEYPIDSDIDEEE---EMIKNPRNGIQRYLVAIEYIGTRFSGSQKQLNVRT 74

Query: 307  VVGVLEEAFHKFIGQPVSILCSSRTDAGVHALSNVCHVDIERISKRKPGELLPPHEPGVV 486
            VVGVLEEAF KF+GQPVS+ CSSRT AGVHALSNVCHVDI+RISKR+PGE+L PHEP VV
Sbjct: 75   VVGVLEEAFSKFVGQPVSVSCSSRTVAGVHALSNVCHVDIQRISKRRPGEVLTPHEPAVV 134

Query: 487  RRAVNHFLQKNEGDIVVIDVRCIPADFHARHKARERIYFYRLLSGPESLSTFEKDRAWHI 666
             RAVNHFLQK + D++VIDVRC+P+DFHAR KA+ERIYFYRLLSGPE LSTFEKDRAWH+
Sbjct: 135  GRAVNHFLQKQDSDLMVIDVRCVPSDFHARFKAQERIYFYRLLSGPEPLSTFEKDRAWHV 194

Query: 667  PEEVDVVAMQKACKILMGQHDFSSFRAAGCQAKSPIRTLDELNVTEVLPTPYFPSSVERG 846
            PEE+ + AMQ+AC++L+G HDFSSFRAAGCQAKSPIRTLDEL+V EV+ +PYFPS ++R 
Sbjct: 195  PEELSLPAMQEACRVLVGFHDFSSFRAAGCQAKSPIRTLDELSVNEVIESPYFPSLMDRE 254

Query: 847  QFDSLQQAPLLNSCTSRVEL---PIKSSIADHCVADSSNYISGVEFGQRRRHRCYVITAR 1017
            Q + +     L SC +  E    P  +   D  +A S +    V FG+RRRHRC V+TAR
Sbjct: 255  QHNKVSGD--LRSCPNNSETDIPPTSNPSIDKVMASSQD----VGFGKRRRHRCLVVTAR 308

Query: 1018 ARSFLYHQVRLLVGVLKSVGTGDLTPDDVQRILEAKNVAAASPMAPACGLYLGRVKYDLP 1197
            AR+FLYHQVRLLVGVLK+VGTG+LT  DV+RIL A+ V AASPMAPACGLYLG VKYDLP
Sbjct: 309  ARAFLYHQVRLLVGVLKAVGTGNLTIPDVERILNARTVTAASPMAPACGLYLGEVKYDLP 368


>gb|EYU26478.1| hypothetical protein MIMGU_mgv1a018737mg [Mimulus guttatus]
          Length = 374

 Score =  475 bits (1222), Expect = e-131
 Identities = 242/363 (66%), Positives = 294/363 (80%), Gaps = 7/363 (1%)
 Frame = +1

Query: 130  EKPSKIAKTDSDNLSDEEKEELKNQQV-------MNQNPRLQRYLVAIEYIGTRFSGSQK 288
            ++PSK+AK D  + S + +EE + ++        M  NPR+QRYLVAIEY+GTRFSG+Q+
Sbjct: 19   QRPSKLAKFDGVDFSGDGEEEEEEEEAGEFAEKSMVPNPRIQRYLVAIEYLGTRFSGAQQ 78

Query: 289  QPNFRTVVGVLEEAFHKFIGQPVSILCSSRTDAGVHALSNVCHVDIERISKRKPGELLPP 468
            QP  RTVVGVLE+AF KFIGQPVSI CSSRTDAGVHALSNVCHVDIER SKRKPGE+LPP
Sbjct: 79   QPTGRTVVGVLEDAFQKFIGQPVSIFCSSRTDAGVHALSNVCHVDIERTSKRKPGEVLPP 138

Query: 469  HEPGVVRRAVNHFLQKNEGDIVVIDVRCIPADFHARHKARERIYFYRLLSGPESLSTFEK 648
            HEP VV+ AVNHFLQKNEGD++VIDV+C+PADFH+R+KA+ER YFYRLLSG E LSTFEK
Sbjct: 139  HEPSVVKSAVNHFLQKNEGDMMVIDVKCVPADFHSRYKAQERTYFYRLLSGMEPLSTFEK 198

Query: 649  DRAWHIPEEVDVVAMQKACKILMGQHDFSSFRAAGCQAKSPIRTLDELNVTEVLPTPYFP 828
            +RAWH+PEE+D+++MQKAC++L+G+HDFSSFRA+ CQAKSPI+TLDEL+VTEV    YFP
Sbjct: 199  NRAWHVPEELDILSMQKACQVLIGRHDFSSFRASACQAKSPIKTLDELSVTEVASGTYFP 258

Query: 829  SSVERGQFDSLQQAPLLNSCTSRVELPIKSSIADHCVADSSNYISGVEFGQRRRHRCYVI 1008
            S  ER Q +   +   L S +++ E     S+  + V ++   I G  FG R+RHRC V+
Sbjct: 259  SPAERKQSNYTTEG--LVSISNKSE---TDSVNGNSVGEA---IQG--FGIRKRHRCIVV 308

Query: 1009 TARARSFLYHQVRLLVGVLKSVGTGDLTPDDVQRILEAKNVAAASPMAPACGLYLGRVKY 1188
            TAR RSFLYHQVRLLVGVLKSVGTGDLT  DV+RIL+AK++  ASPMAPA GLYLG+VKY
Sbjct: 309  TARGRSFLYHQVRLLVGVLKSVGTGDLTVSDVERILKAKDIRTASPMAPAGGLYLGQVKY 368

Query: 1189 DLP 1197
            DLP
Sbjct: 369  DLP 371


>ref|XP_007148560.1| hypothetical protein PHAVU_006G218900g [Phaseolus vulgaris]
            gi|561021783|gb|ESW20554.1| hypothetical protein
            PHAVU_006G218900g [Phaseolus vulgaris]
          Length = 372

 Score =  472 bits (1214), Expect = e-130
 Identities = 237/357 (66%), Positives = 283/357 (79%), Gaps = 2/357 (0%)
 Frame = +1

Query: 133  KPSKIAKTDSDNLSDEEKEELKNQQVMNQNPR--LQRYLVAIEYIGTRFSGSQKQPNFRT 306
            +PSK++K +       E +E + ++ M QNPR  +QRY +AIEYIGTRFSGSQKQ   RT
Sbjct: 18   RPSKLSKIEHSTHIAHEDDEEEEEKEMTQNPRNGIQRYFLAIEYIGTRFSGSQKQLTCRT 77

Query: 307  VVGVLEEAFHKFIGQPVSILCSSRTDAGVHALSNVCHVDIERISKRKPGELLPPHEPGVV 486
            VVG LEEAF KF+G PVS+ CSSRTDAGVHALSNVCHVDI+R SKRKPGE+LPPHEP VV
Sbjct: 78   VVGALEEAFAKFVGHPVSVSCSSRTDAGVHALSNVCHVDIQRTSKRKPGEVLPPHEPAVV 137

Query: 487  RRAVNHFLQKNEGDIVVIDVRCIPADFHARHKARERIYFYRLLSGPESLSTFEKDRAWHI 666
             RAVNHFLQ ++ D+ VIDVRC+P+DFHAR+KA ER YFYRLLSGPE LSTFEKDRAWH+
Sbjct: 138  GRAVNHFLQ-HDSDLTVIDVRCVPSDFHARYKALERTYFYRLLSGPEPLSTFEKDRAWHV 196

Query: 667  PEEVDVVAMQKACKILMGQHDFSSFRAAGCQAKSPIRTLDELNVTEVLPTPYFPSSVERG 846
             EE+++ AMQ+AC++L+G HDFSSFRAAGCQAKSPIRTLDELNV+EV+ + +FPS ++R 
Sbjct: 197  SEELNLPAMQEACRVLVGSHDFSSFRAAGCQAKSPIRTLDELNVSEVIESLHFPSVMDRE 256

Query: 847  QFDSLQQAPLLNSCTSRVELPIKSSIADHCVADSSNYISGVEFGQRRRHRCYVITARARS 1026
              D +   P      S  ++P  SS    C+   +     V FG+RRRHRC V+TARARS
Sbjct: 257  GHDKVSSDPRSYPSNSETDIPPSSS---PCIDKVTTSSEDVGFGKRRRHRCLVVTARARS 313

Query: 1027 FLYHQVRLLVGVLKSVGTGDLTPDDVQRILEAKNVAAASPMAPACGLYLGRVKYDLP 1197
            FLYHQVRLLVGVLK+VGTG+LT  DV+RIL AK+V +ASPMAPACGLYLG VKYDLP
Sbjct: 314  FLYHQVRLLVGVLKAVGTGNLTIPDVERILNAKSVTSASPMAPACGLYLGEVKYDLP 370