BLASTX nr result
ID: Cocculus23_contig00025510
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00025510
(355 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007045271.1| Cleavage and polyadenylation specificity fac... 139 5e-31
ref|XP_006448159.1| hypothetical protein CICLE_v10014563mg [Citr... 134 2e-29
ref|XP_006469322.1| PREDICTED: cleavage and polyadenylation spec... 133 2e-29
ref|XP_004498247.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and... 133 3e-29
ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation spec... 129 3e-28
gb|AAS80153.1| ACT11D09.9 [Cucumis melo] 129 4e-28
ref|XP_004166505.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and... 127 2e-27
ref|XP_007225129.1| hypothetical protein PRUPE_ppa002557mg [Prun... 126 4e-27
ref|XP_006574817.1| PREDICTED: cleavage and polyadenylation spec... 125 5e-27
ref|XP_006574816.1| PREDICTED: cleavage and polyadenylation spec... 125 5e-27
ref|XP_007153236.1| hypothetical protein PHAVU_003G018200g [Phas... 125 6e-27
gb|AFK42005.1| unknown [Medicago truncatula] 125 8e-27
gb|ACJ86282.1| unknown [Medicago truncatula] gi|388517311|gb|AFK... 125 8e-27
ref|XP_002281277.2| PREDICTED: uncharacterized protein LOC100261... 124 1e-26
emb|CBI26829.3| unnamed protein product [Vitis vinifera] 124 1e-26
ref|XP_002526000.1| cleavage and polyadenylation specificity fac... 124 1e-26
emb|CAN61405.1| hypothetical protein VITISV_014259 [Vitis vinifera] 124 1e-26
ref|XP_006661200.1| PREDICTED: cleavage and polyadenylation spec... 119 3e-25
gb|EYU39703.1| hypothetical protein MIMGU_mgv1a002729mg [Mimulus... 119 4e-25
ref|XP_004298504.1| PREDICTED: cleavage and polyadenylation spec... 116 3e-24
>ref|XP_007045271.1| Cleavage and polyadenylation specificity factor 73 kDa subunit-II
[Theobroma cacao] gi|508709206|gb|EOY01103.1| Cleavage
and polyadenylation specificity factor 73 kDa subunit-II
[Theobroma cacao]
Length = 657
Score = 139 bits (349), Expect = 5e-31
Identities = 67/90 (74%), Positives = 75/90 (83%)
Frame = -1
Query: 289 PHTDAKGIMDLVKFLAPKHVMLVHGEKPKMALLKERIQSELGIQCCDPANNATVTIPSTQ 110
PHTDAKGIMDLVKFL+PKH +LVHGEKPKMA LKERIQSELGIQC PANN TVTIP+T
Sbjct: 390 PHTDAKGIMDLVKFLSPKHAILVHGEKPKMATLKERIQSELGIQCYCPANNDTVTIPTTH 449
Query: 109 SVKVDATDTFIQKCLNPNFELLKSVAMTNS 20
VK DA+D FI+ CLNPNF+ KS ++ S
Sbjct: 450 YVKADASDAFIKSCLNPNFKFSKSSSVDKS 479
>ref|XP_006448159.1| hypothetical protein CICLE_v10014563mg [Citrus clementina]
gi|557550770|gb|ESR61399.1| hypothetical protein
CICLE_v10014563mg [Citrus clementina]
Length = 646
Score = 134 bits (336), Expect = 2e-29
Identities = 62/84 (73%), Positives = 72/84 (85%)
Frame = -1
Query: 289 PHTDAKGIMDLVKFLAPKHVMLVHGEKPKMALLKERIQSELGIQCCDPANNATVTIPSTQ 110
PHTD KGIMDLVKFL+P+HV+LVHGEKPKMA LKERIQSELGI+C DPANN ++ IPST
Sbjct: 386 PHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTH 445
Query: 109 SVKVDATDTFIQKCLNPNFELLKS 38
VK A+D FI+ C+NPNF+ LKS
Sbjct: 446 YVKAGASDAFIRSCMNPNFQFLKS 469
>ref|XP_006469322.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Citrus sinensis]
Length = 1019
Score = 133 bits (335), Expect = 2e-29
Identities = 62/84 (73%), Positives = 72/84 (85%)
Frame = -1
Query: 289 PHTDAKGIMDLVKFLAPKHVMLVHGEKPKMALLKERIQSELGIQCCDPANNATVTIPSTQ 110
PHTD KGIMDLVKFL+P+HV+LVHGEKPKMA LKERIQSELGI+C DPANN ++ IPST
Sbjct: 386 PHTDGKGIMDLVKFLSPQHVILVHGEKPKMATLKERIQSELGIKCYDPANNESMCIPSTH 445
Query: 109 SVKVDATDTFIQKCLNPNFELLKS 38
VK A+D FI+ C+NPNF+ LKS
Sbjct: 446 YVKAGASDAFIRSCMNPNFQYLKS 469
>ref|XP_004498247.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-II-like [Cicer arietinum]
Length = 532
Score = 133 bits (334), Expect = 3e-29
Identities = 63/83 (75%), Positives = 71/83 (85%)
Frame = -1
Query: 289 PHTDAKGIMDLVKFLAPKHVMLVHGEKPKMALLKERIQSELGIQCCDPANNATVTIPSTQ 110
PHTD+KGIMDLVKFL+PKHV+LVHGEKPKMA LKERI SELGIQC +PANN TV IPSTQ
Sbjct: 391 PHTDSKGIMDLVKFLSPKHVILVHGEKPKMASLKERIHSELGIQCYNPANNETVCIPSTQ 450
Query: 109 SVKVDATDTFIQKCLNPNFELLK 41
V +A+ TFI+ CLNPNF+ K
Sbjct: 451 YVNAEASGTFIRNCLNPNFQFQK 473
>ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Cucumis sativus]
Length = 649
Score = 129 bits (325), Expect = 3e-28
Identities = 62/83 (74%), Positives = 70/83 (84%)
Frame = -1
Query: 289 PHTDAKGIMDLVKFLAPKHVMLVHGEKPKMALLKERIQSELGIQCCDPANNATVTIPSTQ 110
PHTD+KGIMDLVKFL+PKHV+LVHGEKPKMA+LKERI SELGI C DPANN TV+I ST
Sbjct: 391 PHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTL 450
Query: 109 SVKVDATDTFIQKCLNPNFELLK 41
SVK +A+ FIQ C PNF+ LK
Sbjct: 451 SVKAEASSMFIQSCSTPNFKFLK 473
>gb|AAS80153.1| ACT11D09.9 [Cucumis melo]
Length = 708
Score = 129 bits (324), Expect = 4e-28
Identities = 61/83 (73%), Positives = 70/83 (84%)
Frame = -1
Query: 289 PHTDAKGIMDLVKFLAPKHVMLVHGEKPKMALLKERIQSELGIQCCDPANNATVTIPSTQ 110
PHTD+KGIMDLVKFL+PKHV+LVHGEKPKMA+LKERI SELGI C DPANN TV+I ST
Sbjct: 420 PHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTL 479
Query: 109 SVKVDATDTFIQKCLNPNFELLK 41
S+K +A+ FIQ C PNF+ LK
Sbjct: 480 SIKAEASSMFIQSCSTPNFKFLK 502
>ref|XP_004166505.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-II-like, partial [Cucumis
sativus]
Length = 472
Score = 127 bits (319), Expect = 2e-27
Identities = 61/81 (75%), Positives = 68/81 (83%)
Frame = -1
Query: 289 PHTDAKGIMDLVKFLAPKHVMLVHGEKPKMALLKERIQSELGIQCCDPANNATVTIPSTQ 110
PHTD+KGIMDLVKFL+PKHV+LVHGEKPKMA+LKERI SELGI C DPANN TV+I ST
Sbjct: 235 PHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTL 294
Query: 109 SVKVDATDTFIQKCLNPNFEL 47
SVK +A+ FIQ C PNF L
Sbjct: 295 SVKAEASSMFIQSCSTPNFNL 315
>ref|XP_007225129.1| hypothetical protein PRUPE_ppa002557mg [Prunus persica]
gi|462422065|gb|EMJ26328.1| hypothetical protein
PRUPE_ppa002557mg [Prunus persica]
Length = 658
Score = 126 bits (316), Expect = 4e-27
Identities = 61/84 (72%), Positives = 70/84 (83%)
Frame = -1
Query: 289 PHTDAKGIMDLVKFLAPKHVMLVHGEKPKMALLKERIQSELGIQCCDPANNATVTIPSTQ 110
PHTDAKGIMDL+KFL+PK+V+LVHGEKPKMA LK +IQSELGIQC DPANN TV+I ST
Sbjct: 394 PHTDAKGIMDLIKFLSPKNVILVHGEKPKMATLKGKIQSELGIQCHDPANNETVSISSTH 453
Query: 109 SVKVDATDTFIQKCLNPNFELLKS 38
VK A+D FI+ C NPNF+ KS
Sbjct: 454 YVKALASDAFIRSCSNPNFKFSKS 477
>ref|XP_006574817.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like isoform X2 [Glycine max]
Length = 528
Score = 125 bits (315), Expect = 5e-27
Identities = 63/92 (68%), Positives = 72/92 (78%), Gaps = 2/92 (2%)
Frame = -1
Query: 289 PHTDAKGIMDLVKFLAPKHVMLVHGEKPKMALLKERIQSELGIQCCDPANNATVTIPSTQ 110
PHTD+KGIMDLV FL+PKHV+LVHGEK KMA LKE+I SELGIQC DPANN TVTIPS
Sbjct: 387 PHTDSKGIMDLVNFLSPKHVILVHGEKHKMASLKEKIHSELGIQCYDPANNETVTIPSAN 446
Query: 109 SVKVDATDTFIQKCLNPNFELLK--SVAMTNS 20
V + +DTFI+ CL+PNF K SV + NS
Sbjct: 447 YVYAETSDTFIRSCLSPNFTFQKCSSVDLCNS 478
>ref|XP_006574816.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like isoform X1 [Glycine max]
Length = 532
Score = 125 bits (315), Expect = 5e-27
Identities = 63/92 (68%), Positives = 72/92 (78%), Gaps = 2/92 (2%)
Frame = -1
Query: 289 PHTDAKGIMDLVKFLAPKHVMLVHGEKPKMALLKERIQSELGIQCCDPANNATVTIPSTQ 110
PHTD+KGIMDLV FL+PKHV+LVHGEK KMA LKE+I SELGIQC DPANN TVTIPS
Sbjct: 391 PHTDSKGIMDLVNFLSPKHVILVHGEKHKMASLKEKIHSELGIQCYDPANNETVTIPSAN 450
Query: 109 SVKVDATDTFIQKCLNPNFELLK--SVAMTNS 20
V + +DTFI+ CL+PNF K SV + NS
Sbjct: 451 YVYAETSDTFIRSCLSPNFTFQKCSSVDLCNS 482
>ref|XP_007153236.1| hypothetical protein PHAVU_003G018200g [Phaseolus vulgaris]
gi|561026590|gb|ESW25230.1| hypothetical protein
PHAVU_003G018200g [Phaseolus vulgaris]
Length = 537
Score = 125 bits (314), Expect = 6e-27
Identities = 59/83 (71%), Positives = 67/83 (80%)
Frame = -1
Query: 289 PHTDAKGIMDLVKFLAPKHVMLVHGEKPKMALLKERIQSELGIQCCDPANNATVTIPSTQ 110
PHTD+KGIMDLV FLAPKHV+LVHGEK KMA LKE+I SE GIQC DPANN T+ IPST
Sbjct: 391 PHTDSKGIMDLVNFLAPKHVILVHGEKHKMASLKEKIHSEFGIQCYDPANNETICIPSTH 450
Query: 109 SVKVDATDTFIQKCLNPNFELLK 41
V +A+DTFI+ CL+PNF K
Sbjct: 451 YVNAEASDTFIRSCLSPNFTFQK 473
>gb|AFK42005.1| unknown [Medicago truncatula]
Length = 534
Score = 125 bits (313), Expect = 8e-27
Identities = 60/86 (69%), Positives = 68/86 (79%)
Frame = -1
Query: 286 HTDAKGIMDLVKFLAPKHVMLVHGEKPKMALLKERIQSELGIQCCDPANNATVTIPSTQS 107
HTD+KGIMDLVKFL+PKHVMLVHG+KPKM LKERI SELGI C PANN VTI STQ
Sbjct: 392 HTDSKGIMDLVKFLSPKHVMLVHGDKPKMVSLKERIDSELGIPCSHPANNEIVTISSTQY 451
Query: 106 VKVDATDTFIQKCLNPNFELLKSVAM 29
V +A+DTF + CLNPNF+ K +M
Sbjct: 452 VNAEASDTFTKNCLNPNFKFQKCSSM 477
>gb|ACJ86282.1| unknown [Medicago truncatula] gi|388517311|gb|AFK46717.1| unknown
[Medicago truncatula]
Length = 277
Score = 125 bits (313), Expect = 8e-27
Identities = 60/86 (69%), Positives = 68/86 (79%)
Frame = -1
Query: 286 HTDAKGIMDLVKFLAPKHVMLVHGEKPKMALLKERIQSELGIQCCDPANNATVTIPSTQS 107
HTD+KGIMDLVKFL+PKHVMLVHG+KPKM LKERI SELGI C PANN VTI STQ
Sbjct: 135 HTDSKGIMDLVKFLSPKHVMLVHGDKPKMVSLKERIDSELGIPCSHPANNEIVTISSTQY 194
Query: 106 VKVDATDTFIQKCLNPNFELLKSVAM 29
V +A+DTF + CLNPNF+ K +M
Sbjct: 195 VNAEASDTFTKNCLNPNFKFQKCSSM 220
>ref|XP_002281277.2| PREDICTED: uncharacterized protein LOC100261060 [Vitis vinifera]
Length = 2299
Score = 124 bits (312), Expect = 1e-26
Identities = 60/90 (66%), Positives = 73/90 (81%)
Frame = -1
Query: 289 PHTDAKGIMDLVKFLAPKHVMLVHGEKPKMALLKERIQSELGIQCCDPANNATVTIPSTQ 110
PHTDAKGIMDLVKFL+PKHV+LVHGEKPKMA LK +I+S+LGIQC PANN TV IPST
Sbjct: 1640 PHTDAKGIMDLVKFLSPKHVILVHGEKPKMASLKGKIESDLGIQCYYPANNDTVCIPSTC 1699
Query: 109 SVKVDATDTFIQKCLNPNFELLKSVAMTNS 20
+K D + TFI+ LNPNF+ +K+++ S
Sbjct: 1700 WLKADTSKTFIRSSLNPNFKFVKTISEDKS 1729
>emb|CBI26829.3| unnamed protein product [Vitis vinifera]
Length = 686
Score = 124 bits (312), Expect = 1e-26
Identities = 60/90 (66%), Positives = 73/90 (81%)
Frame = -1
Query: 289 PHTDAKGIMDLVKFLAPKHVMLVHGEKPKMALLKERIQSELGIQCCDPANNATVTIPSTQ 110
PHTDAKGIMDLVKFL+PKHV+LVHGEKPKMA LK +I+S+LGIQC PANN TV IPST
Sbjct: 446 PHTDAKGIMDLVKFLSPKHVILVHGEKPKMASLKGKIESDLGIQCYYPANNDTVCIPSTC 505
Query: 109 SVKVDATDTFIQKCLNPNFELLKSVAMTNS 20
+K D + TFI+ LNPNF+ +K+++ S
Sbjct: 506 WLKADTSKTFIRSSLNPNFKFVKTISEDKS 535
>ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis] gi|223534732|gb|EEF36424.1| cleavage and
polyadenylation specificity factor, putative [Ricinus
communis]
Length = 963
Score = 124 bits (312), Expect = 1e-26
Identities = 61/82 (74%), Positives = 68/82 (82%)
Frame = -1
Query: 289 PHTDAKGIMDLVKFLAPKHVMLVHGEKPKMALLKERIQSELGIQCCDPANNATVTIPSTQ 110
PHTDAKGIMDLVKFL+PKHV+LVHGEKPKMA LKERIQSEL IQC PAN T+ IPST
Sbjct: 391 PHTDAKGIMDLVKFLSPKHVILVHGEKPKMASLKERIQSELEIQCYVPANCETLCIPSTL 450
Query: 109 SVKVDATDTFIQKCLNPNFELL 44
VK DA++ FI+ CL+PNF L
Sbjct: 451 FVKADASEAFIRSCLSPNFRFL 472
>emb|CAN61405.1| hypothetical protein VITISV_014259 [Vitis vinifera]
Length = 328
Score = 124 bits (312), Expect = 1e-26
Identities = 60/90 (66%), Positives = 73/90 (81%)
Frame = -1
Query: 289 PHTDAKGIMDLVKFLAPKHVMLVHGEKPKMALLKERIQSELGIQCCDPANNATVTIPSTQ 110
PHTDAKGIMDLVKFL+PKHV+LVHGEKPKMA LK +I+S+LGIQC PANN TV IPST
Sbjct: 70 PHTDAKGIMDLVKFLSPKHVILVHGEKPKMASLKGKIESDLGIQCYYPANNDTVCIPSTC 129
Query: 109 SVKVDATDTFIQKCLNPNFELLKSVAMTNS 20
+K D + TFI+ LNPNF+ +K+++ S
Sbjct: 130 WLKADTSKTFIRSSLNPNFKFVKTISEDKS 159
>ref|XP_006661200.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Oryza brachyantha]
Length = 545
Score = 119 bits (299), Expect = 3e-25
Identities = 53/74 (71%), Positives = 66/74 (89%)
Frame = -1
Query: 289 PHTDAKGIMDLVKFLAPKHVMLVHGEKPKMALLKERIQSELGIQCCDPANNATVTIPSTQ 110
PHTD+KGIMDL +FL+P HV+LVHGEKP+MA LKERI+SELGIQCC PANN +VTIP+TQ
Sbjct: 393 PHTDSKGIMDLTEFLSPNHVILVHGEKPQMAFLKERIESELGIQCCYPANNESVTIPTTQ 452
Query: 109 SVKVDATDTFIQKC 68
++K++AT+ FI C
Sbjct: 453 NLKINATEKFITSC 466
>gb|EYU39703.1| hypothetical protein MIMGU_mgv1a002729mg [Mimulus guttatus]
Length = 643
Score = 119 bits (298), Expect = 4e-25
Identities = 56/84 (66%), Positives = 68/84 (80%)
Frame = -1
Query: 289 PHTDAKGIMDLVKFLAPKHVMLVHGEKPKMALLKERIQSELGIQCCDPANNATVTIPSTQ 110
PHTDAKGIMDLVKFL+PKHV+LVHGEKPKM LKE I+SEL I C PAN+ T+ IPST+
Sbjct: 392 PHTDAKGIMDLVKFLSPKHVILVHGEKPKMVKLKEIIESELEIPCYHPANHETLHIPSTR 451
Query: 109 SVKVDATDTFIQKCLNPNFELLKS 38
++ A+D F+Q CL PNF+ LK+
Sbjct: 452 RIEASASDAFLQSCLCPNFKFLKT 475
>ref|XP_004298504.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Fragaria vesca subsp. vesca]
Length = 1009
Score = 116 bits (291), Expect = 3e-24
Identities = 56/84 (66%), Positives = 65/84 (77%)
Frame = -1
Query: 289 PHTDAKGIMDLVKFLAPKHVMLVHGEKPKMALLKERIQSELGIQCCDPANNATVTIPSTQ 110
PHTDAKGIMDLVKFL+PKHV+LVHGEKPKMA LK RI++ELGIQC PA N TV+IPST
Sbjct: 386 PHTDAKGIMDLVKFLSPKHVILVHGEKPKMATLKGRIETELGIQCYYPAINETVSIPSTH 445
Query: 109 SVKVDATDTFIQKCLNPNFELLKS 38
+D F+Q C +PNF+ S
Sbjct: 446 YATAVTSDAFVQSCSSPNFKFSTS 469