BLASTX nr result
ID: Cocculus23_contig00025265
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00025265
(257 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003554748.1| PREDICTED: exosome complex component RRP41-l... 47 6e-08
ref|XP_003549686.1| PREDICTED: exosome complex component RRP41 i... 47 6e-08
gb|ACU22892.1| unknown [Glycine max] 47 6e-08
ref|XP_004494789.1| PREDICTED: exosome complex component RRP41-l... 47 1e-07
ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative ... 47 1e-07
ref|XP_002280302.1| PREDICTED: exosome complex component RRP41 [... 47 1e-07
ref|XP_004494791.1| PREDICTED: exosome complex component RRP41-l... 47 1e-07
ref|XP_003626533.1| Exosome complex exonuclease RRP41 [Medicago ... 47 2e-07
gb|AFK39498.1| unknown [Medicago truncatula] 47 2e-07
ref|XP_007051636.1| 3'-5'-exoribonuclease family protein isoform... 47 2e-07
ref|XP_007051637.1| 3'-5'-exoribonuclease family protein isoform... 47 2e-07
ref|XP_006443538.1| hypothetical protein CICLE_v10021944mg [Citr... 47 2e-07
ref|XP_003601084.1| Exosome complex exonuclease RRP41 [Medicago ... 45 4e-07
ref|XP_002320845.1| exonuclease RRP41 family protein [Populus tr... 46 4e-07
ref|XP_007223807.1| hypothetical protein PRUPE_ppa010664mg [Prun... 48 5e-07
ref|XP_007147271.1| hypothetical protein PHAVU_006G109900g [Phas... 44 5e-07
ref|XP_004290319.1| PREDICTED: exosome complex component RRP41-l... 48 8e-07
ref|XP_004299128.1| PREDICTED: exosome complex component RRP41-l... 47 2e-06
ref|XP_004299129.1| PREDICTED: exosome complex component RRP41-l... 47 2e-06
ref|XP_006655159.1| PREDICTED: exosome complex component RRP41-l... 44 2e-06
>ref|XP_003554748.1| PREDICTED: exosome complex component RRP41-like [Glycine max]
Length = 241
Score = 47.4 bits (111), Expect(2) = 6e-08
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = -3
Query: 228 GIPMSDLVTSCSAGYLNSTPLLGISCI 148
GIPM DLVTSCSAGYLNSTPLL ++ +
Sbjct: 146 GIPMRDLVTSCSAGYLNSTPLLDLNYV 172
Score = 35.0 bits (79), Expect(2) = 6e-08
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = -2
Query: 58 DLNFVEDSAGCPDVILGIL 2
DLN+VEDSAG PDV LGIL
Sbjct: 168 DLNYVEDSAGGPDVTLGIL 186
>ref|XP_003549686.1| PREDICTED: exosome complex component RRP41 isoform X1 [Glycine max]
gi|571535380|ref|XP_006600700.1| PREDICTED: exosome
complex component RRP41 isoform X2 [Glycine max]
Length = 241
Score = 47.4 bits (111), Expect(2) = 6e-08
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = -3
Query: 228 GIPMSDLVTSCSAGYLNSTPLLGISCI 148
GIPM DLVTSCSAGYLNSTPLL ++ +
Sbjct: 146 GIPMRDLVTSCSAGYLNSTPLLDLNYV 172
Score = 35.0 bits (79), Expect(2) = 6e-08
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = -2
Query: 58 DLNFVEDSAGCPDVILGIL 2
DLN+VEDSAG PDV LGIL
Sbjct: 168 DLNYVEDSAGGPDVTLGIL 186
>gb|ACU22892.1| unknown [Glycine max]
Length = 190
Score = 47.4 bits (111), Expect(2) = 6e-08
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = -3
Query: 228 GIPMSDLVTSCSAGYLNSTPLLGISCI 148
GIPM DLVTSCSAGYLNSTPLL ++ +
Sbjct: 146 GIPMRDLVTSCSAGYLNSTPLLDLNYV 172
Score = 35.0 bits (79), Expect(2) = 6e-08
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = -2
Query: 58 DLNFVEDSAGCPDVILGIL 2
DLN+VEDSAG PDV LGIL
Sbjct: 168 DLNYVEDSAGGPDVTLGIL 186
>ref|XP_004494789.1| PREDICTED: exosome complex component RRP41-like isoform X1 [Cicer
arietinum] gi|502113882|ref|XP_004494790.1| PREDICTED:
exosome complex component RRP41-like isoform X2 [Cicer
arietinum]
Length = 241
Score = 47.4 bits (111), Expect(2) = 1e-07
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = -3
Query: 228 GIPMSDLVTSCSAGYLNSTPLLGISCI 148
GIPM DLVTSCSAGYLNSTPLL ++ +
Sbjct: 146 GIPMRDLVTSCSAGYLNSTPLLDLNYV 172
Score = 33.9 bits (76), Expect(2) = 1e-07
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -2
Query: 58 DLNFVEDSAGCPDVILGIL 2
DLN+VEDSAG PDV +GIL
Sbjct: 168 DLNYVEDSAGGPDVTVGIL 186
>ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
gi|223529966|gb|EEF31893.1| Exosome complex exonuclease
RRP41, putative [Ricinus communis]
Length = 241
Score = 47.4 bits (111), Expect(2) = 1e-07
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = -3
Query: 228 GIPMSDLVTSCSAGYLNSTPLLGISCI 148
GIPM DLVTSCSAGYLNSTPLL ++ +
Sbjct: 146 GIPMRDLVTSCSAGYLNSTPLLDLNYV 172
Score = 33.9 bits (76), Expect(2) = 1e-07
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -2
Query: 58 DLNFVEDSAGCPDVILGIL 2
DLN+VEDSAG PDV +GIL
Sbjct: 168 DLNYVEDSAGGPDVTVGIL 186
>ref|XP_002280302.1| PREDICTED: exosome complex component RRP41 [Vitis vinifera]
gi|147867252|emb|CAN81194.1| hypothetical protein
VITISV_022853 [Vitis vinifera]
gi|297745390|emb|CBI40470.3| unnamed protein product
[Vitis vinifera]
Length = 241
Score = 47.4 bits (111), Expect(2) = 1e-07
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = -3
Query: 228 GIPMSDLVTSCSAGYLNSTPLLGISCI 148
GIPM DLVTSCSAGYLNSTPLL ++ +
Sbjct: 146 GIPMRDLVTSCSAGYLNSTPLLDLNYV 172
Score = 33.9 bits (76), Expect(2) = 1e-07
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -2
Query: 58 DLNFVEDSAGCPDVILGIL 2
DLN+VEDSAG PDV +GIL
Sbjct: 168 DLNYVEDSAGGPDVTVGIL 186
>ref|XP_004494791.1| PREDICTED: exosome complex component RRP41-like isoform X3 [Cicer
arietinum]
Length = 223
Score = 47.4 bits (111), Expect(2) = 1e-07
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = -3
Query: 228 GIPMSDLVTSCSAGYLNSTPLLGISCI 148
GIPM DLVTSCSAGYLNSTPLL ++ +
Sbjct: 128 GIPMRDLVTSCSAGYLNSTPLLDLNYV 154
Score = 33.9 bits (76), Expect(2) = 1e-07
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -2
Query: 58 DLNFVEDSAGCPDVILGIL 2
DLN+VEDSAG PDV +GIL
Sbjct: 150 DLNYVEDSAGGPDVTVGIL 168
>ref|XP_003626533.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
gi|355501548|gb|AES82751.1| Exosome complex exonuclease
RRP41 [Medicago truncatula]
Length = 241
Score = 47.0 bits (110), Expect(2) = 2e-07
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = -3
Query: 228 GIPMSDLVTSCSAGYLNSTPLLGISCI 148
GIPM DLVTSCSAGYLNSTPLL ++ +
Sbjct: 146 GIPMLDLVTSCSAGYLNSTPLLDLNYV 172
Score = 33.9 bits (76), Expect(2) = 2e-07
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -2
Query: 58 DLNFVEDSAGCPDVILGIL 2
DLN+VEDSAG PDV +GIL
Sbjct: 168 DLNYVEDSAGGPDVTVGIL 186
>gb|AFK39498.1| unknown [Medicago truncatula]
Length = 180
Score = 47.0 bits (110), Expect(2) = 2e-07
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = -3
Query: 228 GIPMSDLVTSCSAGYLNSTPLLGISCI 148
GIPM DLVTSCSAGYLNSTPLL ++ +
Sbjct: 85 GIPMLDLVTSCSAGYLNSTPLLDLNYV 111
Score = 33.9 bits (76), Expect(2) = 2e-07
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -2
Query: 58 DLNFVEDSAGCPDVILGIL 2
DLN+VEDSAG PDV +GIL
Sbjct: 107 DLNYVEDSAGGPDVTVGIL 125
>ref|XP_007051636.1| 3'-5'-exoribonuclease family protein isoform 1 [Theobroma cacao]
gi|508703897|gb|EOX95793.1| 3'-5'-exoribonuclease family
protein isoform 1 [Theobroma cacao]
Length = 316
Score = 47.0 bits (110), Expect(2) = 2e-07
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = -3
Query: 228 GIPMSDLVTSCSAGYLNSTPLLGISCI 148
GIPM D+VTSCSAGYLNSTPLL ++ I
Sbjct: 221 GIPMRDIVTSCSAGYLNSTPLLDLNYI 247
Score = 33.5 bits (75), Expect(2) = 2e-07
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = -2
Query: 58 DLNFVEDSAGCPDVILGIL 2
DLN++EDSAG PDV +GIL
Sbjct: 243 DLNYIEDSAGGPDVTVGIL 261
>ref|XP_007051637.1| 3'-5'-exoribonuclease family protein isoform 2 [Theobroma cacao]
gi|508703898|gb|EOX95794.1| 3'-5'-exoribonuclease family
protein isoform 2 [Theobroma cacao]
Length = 241
Score = 47.0 bits (110), Expect(2) = 2e-07
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = -3
Query: 228 GIPMSDLVTSCSAGYLNSTPLLGISCI 148
GIPM D+VTSCSAGYLNSTPLL ++ I
Sbjct: 146 GIPMRDIVTSCSAGYLNSTPLLDLNYI 172
Score = 33.5 bits (75), Expect(2) = 2e-07
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = -2
Query: 58 DLNFVEDSAGCPDVILGIL 2
DLN++EDSAG PDV +GIL
Sbjct: 168 DLNYIEDSAGGPDVTVGIL 186
>ref|XP_006443538.1| hypothetical protein CICLE_v10021944mg [Citrus clementina]
gi|568851047|ref|XP_006479205.1| PREDICTED: exosome
complex component RRP41-like isoform X1 [Citrus
sinensis] gi|568851049|ref|XP_006479206.1| PREDICTED:
exosome complex component RRP41-like isoform X2 [Citrus
sinensis] gi|557545800|gb|ESR56778.1| hypothetical
protein CICLE_v10021944mg [Citrus clementina]
Length = 241
Score = 46.6 bits (109), Expect(2) = 2e-07
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = -3
Query: 228 GIPMSDLVTSCSAGYLNSTPLLGISCI 148
GIPM D+VTSCSAGYLNSTPLL ++ +
Sbjct: 146 GIPMRDIVTSCSAGYLNSTPLLDLNYV 172
Score = 33.9 bits (76), Expect(2) = 2e-07
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -2
Query: 58 DLNFVEDSAGCPDVILGIL 2
DLN+VEDSAG PDV +GIL
Sbjct: 168 DLNYVEDSAGGPDVTVGIL 186
>ref|XP_003601084.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
gi|355490132|gb|AES71335.1| Exosome complex exonuclease
RRP41 [Medicago truncatula]
Length = 276
Score = 45.4 bits (106), Expect(2) = 4e-07
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -3
Query: 228 GIPMSDLVTSCSAGYLNSTPLLGI 157
GIP+ DLVTSCSAGYLNST LLGI
Sbjct: 144 GIPVRDLVTSCSAGYLNSTALLGI 167
Score = 34.3 bits (77), Expect(2) = 4e-07
Identities = 17/28 (60%), Positives = 22/28 (78%), Gaps = 2/28 (7%)
Frame = -2
Query: 82 LLKIF--LMSDLNFVEDSAGCPDVILGI 5
LLK+ + +DLN+VEDSAG PDV +GI
Sbjct: 183 LLKVSESIWTDLNYVEDSAGVPDVTVGI 210
>ref|XP_002320845.1| exonuclease RRP41 family protein [Populus trichocarpa]
gi|118489833|gb|ABK96716.1| unknown [Populus trichocarpa
x Populus deltoides] gi|222861618|gb|EEE99160.1|
exonuclease RRP41 family protein [Populus trichocarpa]
Length = 241
Score = 45.8 bits (107), Expect(2) = 4e-07
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = -3
Query: 228 GIPMSDLVTSCSAGYLNSTPLLGISCI 148
GIPM DLVTSCSAG+LNSTPLL ++ +
Sbjct: 146 GIPMRDLVTSCSAGFLNSTPLLDLNYV 172
Score = 33.9 bits (76), Expect(2) = 4e-07
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -2
Query: 58 DLNFVEDSAGCPDVILGIL 2
DLN+VEDSAG PDV +GIL
Sbjct: 168 DLNYVEDSAGGPDVTVGIL 186
>ref|XP_007223807.1| hypothetical protein PRUPE_ppa010664mg [Prunus persica]
gi|462420743|gb|EMJ25006.1| hypothetical protein
PRUPE_ppa010664mg [Prunus persica]
Length = 241
Score = 47.8 bits (112), Expect(2) = 5e-07
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = -3
Query: 228 GIPMSDLVTSCSAGYLNSTPLLGISCI 148
GIPM DLVTSCSAGYLNSTPLL ++ I
Sbjct: 146 GIPMRDLVTSCSAGYLNSTPLLDLNYI 172
Score = 31.6 bits (70), Expect(2) = 5e-07
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -2
Query: 58 DLNFVEDSAGCPDVILGIL 2
DLN++EDSAG DV LGIL
Sbjct: 168 DLNYIEDSAGGADVTLGIL 186
>ref|XP_007147271.1| hypothetical protein PHAVU_006G109900g [Phaseolus vulgaris]
gi|561020494|gb|ESW19265.1| hypothetical protein
PHAVU_006G109900g [Phaseolus vulgaris]
Length = 240
Score = 44.3 bits (103), Expect(2) = 5e-07
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = -3
Query: 228 GIPMSDLVTSCSAGYLNSTPLLGISCI 148
GIPM DLVTSCSAGYLNST LL ++ +
Sbjct: 145 GIPMRDLVTSCSAGYLNSTSLLDLNYV 171
Score = 35.0 bits (79), Expect(2) = 5e-07
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = -2
Query: 58 DLNFVEDSAGCPDVILGIL 2
DLN+VEDSAG PDV LGIL
Sbjct: 167 DLNYVEDSAGGPDVTLGIL 185
>ref|XP_004290319.1| PREDICTED: exosome complex component RRP41-like [Fragaria vesca
subsp. vesca]
Length = 241
Score = 47.8 bits (112), Expect(2) = 8e-07
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = -3
Query: 228 GIPMSDLVTSCSAGYLNSTPLLGISCI 148
GIPM DLVTSCSAGYLNSTPLL ++ I
Sbjct: 146 GIPMRDLVTSCSAGYLNSTPLLDLNYI 172
Score = 30.8 bits (68), Expect(2) = 8e-07
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -2
Query: 58 DLNFVEDSAGCPDVILGIL 2
DLN++EDSAG DV LGI+
Sbjct: 168 DLNYIEDSAGGADVTLGIM 186
>ref|XP_004299128.1| PREDICTED: exosome complex component RRP41-like isoform 1 [Fragaria
vesca subsp. vesca]
Length = 248
Score = 46.6 bits (109), Expect(2) = 2e-06
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = -3
Query: 228 GIPMSDLVTSCSAGYLNSTPLLGISCI 148
GIPM DLVTSCSAGYLN+TPLL ++ I
Sbjct: 166 GIPMRDLVTSCSAGYLNNTPLLDLNYI 192
Score = 30.8 bits (68), Expect(2) = 2e-06
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -2
Query: 58 DLNFVEDSAGCPDVILGIL 2
DLN++EDSAG DV LGI+
Sbjct: 188 DLNYIEDSAGGADVTLGIM 206
>ref|XP_004299129.1| PREDICTED: exosome complex component RRP41-like isoform 2 [Fragaria
vesca subsp. vesca]
Length = 241
Score = 46.6 bits (109), Expect(2) = 2e-06
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = -3
Query: 228 GIPMSDLVTSCSAGYLNSTPLLGISCI 148
GIPM DLVTSCSAGYLN+TPLL ++ I
Sbjct: 146 GIPMRDLVTSCSAGYLNNTPLLDLNYI 172
Score = 30.8 bits (68), Expect(2) = 2e-06
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -2
Query: 58 DLNFVEDSAGCPDVILGIL 2
DLN++EDSAG DV LGI+
Sbjct: 168 DLNYIEDSAGGADVTLGIM 186
>ref|XP_006655159.1| PREDICTED: exosome complex component RRP41-like [Oryza brachyantha]
Length = 266
Score = 43.5 bits (101), Expect(2) = 2e-06
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = -3
Query: 228 GIPMSDLVTSCSAGYLNSTPLLGISCI 148
GIPM D+VTSCSAGYL STPLL ++ I
Sbjct: 172 GIPMRDIVTSCSAGYLCSTPLLDLNYI 198
Score = 33.5 bits (75), Expect(2) = 2e-06
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = -2
Query: 58 DLNFVEDSAGCPDVILGIL 2
DLN++EDSAG PDV +GIL
Sbjct: 194 DLNYIEDSAGGPDVTVGIL 212