BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00023138
         (1014 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607...   316   8e-84
ref|XP_006478539.1| PREDICTED: uncharacterized protein LOC102614...   316   1e-83
ref|XP_006495009.1| PREDICTED: uncharacterized protein LOC102608...   312   2e-82
ref|XP_006464891.1| PREDICTED: uncharacterized protein LOC102626...   310   8e-82
ref|XP_006492207.1| PREDICTED: uncharacterized protein LOC102617...   300   8e-79
gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...   289   1e-75
gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subc...   287   4e-75
gb|ABA99142.1| retrotransposon protein, putative, Ty3-gypsy subc...   284   4e-74
gb|AAL58173.1|AC093181_19 putative polyprotein [Oryza sativa Jap...   284   5e-74
gb|AAP53331.2| retrotransposon protein, putative, Ty3-gypsy subc...   284   5e-74
gb|AAM01123.1|AC108884_5 Putative retroelement [Oryza sativa Jap...   283   6e-74
emb|CAD40452.2| OSJNBa0041M21.10 [Oryza sativa Japonica Group] g...   283   6e-74
emb|CAH66268.1| OSIGBa0136B09.4 [Oryza sativa Indica Group]           283   6e-74
gb|AAK50400.1|AC021891_1 Putative retroelement [Oryza sativa Jap...   283   6e-74
gb|ABB47013.1| retrotransposon protein, putative, Ty3-gypsy subc...   283   8e-74
ref|XP_006488688.1| PREDICTED: uncharacterized protein LOC102623...   281   2e-73
gb|ABB47092.1| retrotransposon protein, putative, Ty3-gypsy subc...   279   1e-72
dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]                   279   1e-72
gb|AAK51571.1|AC022352_7 Putative retroelement [Oryza sativa Jap...   279   1e-72
gb|ABF97503.1| retrotransposon protein, putative, unclassified [...   278   3e-72

>ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607673 [Citrus sinensis]
          Length = 1866

 Score =  316 bits (810), Expect = 8e-84
 Identities = 163/338 (48%), Positives = 222/338 (65%), Gaps = 1/338 (0%)
 Frame = +2

Query: 2    LVDNGSSIDILHYKAFKEMGYSNNQLVPVTAPLYGFTGVELRPEGSIRLSVTLGSHPKQV 181
            LVD GSS+DIL   A  +MG S+ +L      L GF G  L P G I L +T+G+ P + 
Sbjct: 644  LVDTGSSVDILFKSALDDMGISDLKLERTNTSLKGFGGGRLTPMGVIELPITVGTKPFER 703

Query: 182  THMINFLVVKAPSAYNIIFGRTGLNKFKAISSTYHLKMKFPTPAGVGEVKGDQKIARSCY 361
            T M++F+VV+  S Y +I GR  +   + + ST++L +K+     VG VKGDQ++ARSCY
Sbjct: 704  TMMLDFVVVEERSPYQMILGRPFMRISQCVISTHYLALKYRINGVVGVVKGDQRMARSCY 763

Query: 362  LMTLKSSSGGGQVLPVDSLDVETEGRM-RAEPMEQLVPIKIDEADPEKITYLGSALQSDI 538
                K      + L V SLD   + +  R EP+E+L  + +  +DP K+  +GS L   I
Sbjct: 764  ATAAK------ETLQVTSLDNRGDSKNGRQEPVEKLKEVVVSRSDPSKVVKVGSELGEAI 817

Query: 539  KERLTRFLKENKEVFAWTPEDMPGIDPHVITHHLNVDPAKKPIKQKKRIFAPERQKAINE 718
            K  L + L+ + ++FAW+ EDMPGID  +  H L V    +P++QK+R F  ER +AIN 
Sbjct: 818  KGELVKCLQSHADIFAWSHEDMPGIDRGIACHKLAVKRGARPVRQKRRCFNHERYEAINA 877

Query: 719  EVDKLLKAKIITEIQYPEWLANPVMVRKPSGKWRMCIDFTDLNNACPKDCFPLPRIDILI 898
            EV+KLLKA  I E +YPEW++N V+V+K +GKWRMC+DFTDLN ACPKD FPLP+ID L+
Sbjct: 878  EVEKLLKAGFIREAKYPEWISNVVLVKKANGKWRMCVDFTDLNKACPKDSFPLPKIDQLV 937

Query: 899  DATAGHELLSFMDAFSGYNQIRMDESDTPKVSFITDLG 1012
            D+TAGH LLSFMDAFSGYNQI M+E D    +FIT++G
Sbjct: 938  DSTAGHSLLSFMDAFSGYNQIPMNEQDEESTTFITNMG 975


>ref|XP_006478539.1| PREDICTED: uncharacterized protein LOC102614166 [Citrus sinensis]
          Length = 1089

 Score =  316 bits (809), Expect = 1e-83
 Identities = 164/338 (48%), Positives = 222/338 (65%), Gaps = 1/338 (0%)
 Frame = +2

Query: 2    LVDNGSSIDILHYKAFKEMGYSNNQLVPVTAPLYGFTGVELRPEGSIRLSVTLGSHPKQV 181
            LVD GSS+DIL   A  +MG S+ +L      L GF G  L P G I L +T+G+ P + 
Sbjct: 477  LVDTGSSVDILFKSALDDMGISDLKLERTNTSLKGFGGGRLTPMGVIELPITVGTKPFER 536

Query: 182  THMINFLVVKAPSAYNIIFGRTGLNKFKAISSTYHLKMKFPTPAGVGEVKGDQKIARSCY 361
            T M++F+VV+  S Y +I GR  +   + + ST++L +K+     VG VKGDQ++ARSCY
Sbjct: 537  TMMLDFVVVEERSPYQMILGRPFMRISQCVMSTHYLALKYRINGVVGVVKGDQRMARSCY 596

Query: 362  LMTLKSSSGGGQVLPVDSLDVETEGRM-RAEPMEQLVPIKIDEADPEKITYLGSALQSDI 538
                K      + L V SLD   + +  R EP+E+L  + I  +DP ++  +GS L   I
Sbjct: 597  ATAAK------ETLQVTSLDNRGDSKNGRQEPVEKLEEVVISRSDPSRVVKVGSELGEAI 650

Query: 539  KERLTRFLKENKEVFAWTPEDMPGIDPHVITHHLNVDPAKKPIKQKKRIFAPERQKAINE 718
            K  L + L+ + +VFAW+ EDMPGID  +  H L V    +P++QK+R F  ER +AIN 
Sbjct: 651  KAELVKCLQSHADVFAWSHEDMPGIDRGIACHKLAVKRGARPVRQKRRCFNHERYEAINA 710

Query: 719  EVDKLLKAKIITEIQYPEWLANPVMVRKPSGKWRMCIDFTDLNNACPKDCFPLPRIDILI 898
            EV+KLLKA  I E +YPEW++N V+V+K +GKWRMC+DFTDLN ACPKD FPLP+ID L+
Sbjct: 711  EVEKLLKAGFIREAKYPEWISNVVLVKKANGKWRMCVDFTDLNKACPKDSFPLPKIDQLV 770

Query: 899  DATAGHELLSFMDAFSGYNQIRMDESDTPKVSFITDLG 1012
            D+TAGH LLSFMDAFSGYNQI M+E D    +FIT++G
Sbjct: 771  DSTAGHGLLSFMDAFSGYNQIPMNEQDEENTTFITNMG 808


>ref|XP_006495009.1| PREDICTED: uncharacterized protein LOC102608416 [Citrus sinensis]
          Length = 1313

 Score =  312 bits (799), Expect = 2e-82
 Identities = 159/338 (47%), Positives = 221/338 (65%), Gaps = 1/338 (0%)
 Frame = +2

Query: 2    LVDNGSSIDILHYKAFKEMGYSNNQLVPVTAPLYGFTGVELRPEGSIRLSVTLGSHPKQV 181
            LVD GSS+DIL   A  +MG S+ +L      L GF G  L P G I L +T+G+ P + 
Sbjct: 489  LVDTGSSVDILFKSALDDMGISDLKLERTNTSLKGFGGGRLTPMGVIELPITVGTKPFER 548

Query: 182  THMINFLVVKAPSAYNIIFGRTGLNKFKAISSTYHLKMKFPTPAGVGEVKGDQKIARSCY 361
            T M++F+VV+  S Y +I GR  +   + + ST++L +K+     VG VKGDQ++ARSCY
Sbjct: 549  TMMLDFVVVEERSPYQMILGRPFMRISQCVMSTHYLALKYRINGVVGVVKGDQRMARSCY 608

Query: 362  LMTLKSSSGGGQVLPVDSLDVETEGRM-RAEPMEQLVPIKIDEADPEKITYLGSALQSDI 538
                K      + L V SLD   + +  R EP+E+L  + +  +DP ++  +GS L  +I
Sbjct: 609  ATAAK------ETLQVTSLDNRGDSKNGRQEPVEKLEEVVVSRSDPSRVVKVGSELGREI 662

Query: 539  KERLTRFLKENKEVFAWTPEDMPGIDPHVITHHLNVDPAKKPIKQKKRIFAPERQKAINE 718
            K  L + L+ + ++FAW+ EDMPGID  +  H L V    +P++QK+R F  +R + IN 
Sbjct: 663  KTELVKCLQSHADIFAWSHEDMPGIDRRIACHKLAVKKGARPVRQKRRCFNHKRYETINA 722

Query: 719  EVDKLLKAKIITEIQYPEWLANPVMVRKPSGKWRMCIDFTDLNNACPKDCFPLPRIDILI 898
            EV+KLLKA  I E +YPEW++N V+V+K +GKWRMC+DFTDLN ACPKD FPL +ID L+
Sbjct: 723  EVEKLLKAGFIREAKYPEWISNVVLVKKANGKWRMCVDFTDLNKACPKDSFPLQKIDQLV 782

Query: 899  DATAGHELLSFMDAFSGYNQIRMDESDTPKVSFITDLG 1012
            D+TAGH LLSFMDAFSGYNQI M+E D    +FIT++G
Sbjct: 783  DSTAGHSLLSFMDAFSGYNQIPMNEQDEESTTFITNMG 820


>ref|XP_006464891.1| PREDICTED: uncharacterized protein LOC102626228 [Citrus sinensis]
          Length = 1189

 Score =  310 bits (793), Expect = 8e-82
 Identities = 157/338 (46%), Positives = 217/338 (64%), Gaps = 1/338 (0%)
 Frame = +2

Query: 2    LVDNGSSIDILHYKAFKEMGYSNNQLVPVTAPLYGFTGVELRPEGSIRLSVTLGSHPKQV 181
            L+D GSS+D+L     +EMG ++ +L      L GF G +L P G + L +T+GS P + 
Sbjct: 579  LIDTGSSVDVLFKSTLEEMGIADRKLEYTNTSLKGFGGGKLVPLGVVELPITIGSSPTER 638

Query: 182  THMINFLVVKAPSAYNIIFGRTGLNKFKAISSTYHLKMKFPTPAGVGEVKGDQKIARSCY 361
            T +++F+VV     Y +I GR  L   KA+ S ++L +K+     VG V+G Q+IAR CY
Sbjct: 639  TMILDFVVVDEEGPYQMILGRPFLRMSKAVLSNHYLALKYRVNGIVGVVRGGQRIARGCY 698

Query: 362  LMTLKSSSGGGQVLPVDSLDVETEGRM-RAEPMEQLVPIKIDEADPEKITYLGSALQSDI 538
                  SS   + + + SLD   E +  R EP+E L  + +   +P K   +GS L+ + 
Sbjct: 699  ------SSAVREAMQITSLDTRVENKKGRQEPVEDLETVSLGPENPGKTIRIGSRLEGEQ 752

Query: 539  KERLTRFLKENKEVFAWTPEDMPGIDPHVITHHLNVDPAKKPIKQKKRIFAPERQKAINE 718
            K+ L + L+ + +VFAWT EDMPGIDP V  H L +    + ++QK+R F  ER +AIN 
Sbjct: 753  KQELVKCLQAHADVFAWTHEDMPGIDPEVACHRLAIKKGARAVRQKRRCFNQERYEAING 812

Query: 719  EVDKLLKAKIITEIQYPEWLANPVMVRKPSGKWRMCIDFTDLNNACPKDCFPLPRIDILI 898
            EV+KLL+A  I E+ YPEW++N V+V+K +GKWRMC+DFTDLN ACPKD FPLP+ID L+
Sbjct: 813  EVEKLLRAGFIREVSYPEWISNVVLVKKANGKWRMCVDFTDLNKACPKDSFPLPKIDQLV 872

Query: 899  DATAGHELLSFMDAFSGYNQIRMDESDTPKVSFITDLG 1012
            D+TAGH LLSFMDAFSGYNQI M E D    +FIT+ G
Sbjct: 873  DSTAGHGLLSFMDAFSGYNQIPMYEPDEESTAFITNQG 910


>ref|XP_006492207.1| PREDICTED: uncharacterized protein LOC102617447 [Citrus sinensis]
          Length = 1100

 Score =  300 bits (767), Expect = 8e-79
 Identities = 151/338 (44%), Positives = 219/338 (64%), Gaps = 1/338 (0%)
 Frame = +2

Query: 2    LVDNGSSIDILHYKAFKEMGYSNNQLVPVTAPLYGFTGVELRPEGSIRLSVTLGSHPKQV 181
            L++ GSS+DI+      +MG ++ +L      L GF G  L P G I L +T+G+ P + 
Sbjct: 343  LIEMGSSVDIVFKSTLDDMGIADLKLERTNTSLKGFGGGRLTPIGIIELPITVGTKPFER 402

Query: 182  THMINFLVVKAPSAYNIIFGRTGLNKFKAISSTYHLKMKFPTPAGVGEVKGDQKIARSCY 361
            T M++F+VV+  S Y II GR  +   + + ST++L +K+     VG VKGDQ++ARSCY
Sbjct: 403  TMMLDFVVVEERSPYEIILGRPFMRISQCVVSTHYLPLKYRVNGVVGVVKGDQRMARSCY 462

Query: 362  LMTLKSSSGGGQVLPVDSLDVETEGRM-RAEPMEQLVPIKIDEADPEKITYLGSALQSDI 538
                K      + L V SLD   + +  R EP+E+L  + + +++P ++  +GS L   +
Sbjct: 463  ATAAK------ETLQVTSLDNRGDSKKGRQEPVEKLEEVAVSKSNPSRVVKIGSGLVGAV 516

Query: 539  KERLTRFLKENKEVFAWTPEDMPGIDPHVITHHLNVDPAKKPIKQKKRIFAPERQKAINE 718
            + +L + L+   ++FAW+ ED PGI+  V  H L +    +P++QK+R F  ER +AIN 
Sbjct: 517  RGKLVKCLQSRADIFAWSHEDTPGINRGVACHKLAIKKEARPVRQKRRCFNQERYEAINA 576

Query: 719  EVDKLLKAKIITEIQYPEWLANPVMVRKPSGKWRMCIDFTDLNNACPKDCFPLPRIDILI 898
            EV+KLLKA  I E +YPEW++N V+V+K +GKWRMC+DFTDLN AC KD FPLP ID L+
Sbjct: 577  EVEKLLKAGFIREAKYPEWISNVVLVKKANGKWRMCVDFTDLNKACQKDSFPLPMIDQLV 636

Query: 899  DATAGHELLSFMDAFSGYNQIRMDESDTPKVSFITDLG 1012
            D+TAGH LLSF+DAFSGYNQI MDE D    ++IT++G
Sbjct: 637  DSTAGHSLLSFIDAFSGYNQIPMDEQDEENTTYITNMG 674


>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1980

 Score =  289 bits (739), Expect = 1e-75
 Identities = 155/337 (45%), Positives = 207/337 (61%)
 Frame = +2

Query: 2    LVDNGSSIDILHYKAFKEMGYSNNQLVPVTAPLYGFTGVELRPEGSIRLSVTLGSHPKQV 181
            L+D GSS D+L Y AFK+M    ++L     PL GF G ++   G I L V  G      
Sbjct: 770  LIDGGSSADVLFYDAFKKMQIPEDRLTNAGVPLQGFGGQQVHAIGKISLQVVFGKGTNVR 829

Query: 182  THMINFLVVKAPSAYNIIFGRTGLNKFKAISSTYHLKMKFPTPAGVGEVKGDQKIARSCY 361
               I F VV  P  YN I GR+ +N F+AI    ++ MK P P GV  V+G+Q +AR   
Sbjct: 830  KEEIVFDVVDMPYQYNAILGRSTINIFEAIIHHNYICMKLPGPRGVITVRGEQLVARKYE 889

Query: 362  LMTLKSSSGGGQVLPVDSLDVETEGRMRAEPMEQLVPIKIDEADPEKITYLGSALQSDIK 541
            L    S  G   V  VD    E     +  P  +   +++DE DP K   +G  L+  I+
Sbjct: 890  LQGTPSVKG---VHVVDQKQGEYIKIQKPIPEGKTKKVQLDEHDPGKFILIGENLEKHIE 946

Query: 542  ERLTRFLKENKEVFAWTPEDMPGIDPHVITHHLNVDPAKKPIKQKKRIFAPERQKAINEE 721
            E + + +KEN  VFAW+P+++ G+D  +I H+L +    KP KQK R  + +RQ+A   E
Sbjct: 947  EEILKVVKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRRMSTDRQQAAKIE 1006

Query: 722  VDKLLKAKIITEIQYPEWLANPVMVRKPSGKWRMCIDFTDLNNACPKDCFPLPRIDILID 901
            ++KLLKAK+I E+ +PEWLANPV+V+K +GKWRMCIDFTDLN ACPKD FPLPRID L+D
Sbjct: 1007 LEKLLKAKVIREVMHPEWLANPVLVKKANGKWRMCIDFTDLNKACPKDDFPLPRIDQLVD 1066

Query: 902  ATAGHELLSFMDAFSGYNQIRMDESDTPKVSFITDLG 1012
            ATAG EL+SF+DA+SGY+Q+ M + D  K SFIT  G
Sbjct: 1067 ATAGCELMSFLDAYSGYHQVFMVKEDEEKTSFITPFG 1103


>gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1889

 Score =  287 bits (735), Expect = 4e-75
 Identities = 155/337 (45%), Positives = 206/337 (61%)
 Frame = +2

Query: 2    LVDNGSSIDILHYKAFKEMGYSNNQLVPVTAPLYGFTGVELRPEGSIRLSVTLGSHPKQV 181
            L+D GSS D+L Y AFK+M    ++L     PL GF G ++   G I L V  G      
Sbjct: 770  LIDGGSSADVLFYDAFKKMQIPEDRLTNAGVPLQGFGGQQVHAIGKISLQVVFGKGTNVR 829

Query: 182  THMINFLVVKAPSAYNIIFGRTGLNKFKAISSTYHLKMKFPTPAGVGEVKGDQKIARSCY 361
               I F VV  P  YN I GR+ +N F+AI    ++ MK P P GV  V+G+Q  AR   
Sbjct: 830  KEEIVFDVVDMPYQYNAILGRSTINIFEAIIHHNYICMKLPGPRGVITVRGEQLAARKYE 889

Query: 362  LMTLKSSSGGGQVLPVDSLDVETEGRMRAEPMEQLVPIKIDEADPEKITYLGSALQSDIK 541
            L    S  G   V  VD    E     +  P  +   +++DE DP K   +G  L+  I+
Sbjct: 890  LQGTPSVKG---VHVVDQKQGEYIKIQKPIPEGKTKKVQLDEHDPGKFILIGENLEKHIE 946

Query: 542  ERLTRFLKENKEVFAWTPEDMPGIDPHVITHHLNVDPAKKPIKQKKRIFAPERQKAINEE 721
            E + + +KEN  VFAW+P+++ G+D  +I H+L +    KP KQK R  + +RQ+A   E
Sbjct: 947  EEILKVVKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRRMSTDRQQAAKIE 1006

Query: 722  VDKLLKAKIITEIQYPEWLANPVMVRKPSGKWRMCIDFTDLNNACPKDCFPLPRIDILID 901
            ++KLLKAK+I E+ +PEWLANPV+V+K +GKWRMCIDFTDLN ACPKD FPLPRID L+D
Sbjct: 1007 LEKLLKAKVIREVMHPEWLANPVLVKKANGKWRMCIDFTDLNKACPKDDFPLPRIDQLVD 1066

Query: 902  ATAGHELLSFMDAFSGYNQIRMDESDTPKVSFITDLG 1012
            ATAG EL+SF+DA+SGY+Q+ M + D  K SFIT  G
Sbjct: 1067 ATAGCELMSFLDAYSGYHQVFMVKEDEEKTSFITPFG 1103


>gb|ABA99142.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1342

 Score =  284 bits (727), Expect = 4e-74
 Identities = 153/343 (44%), Positives = 209/343 (60%), Gaps = 6/343 (1%)
 Frame = +2

Query: 2    LVDNGSSIDILHYKAFKEMGYSNNQLVPVTAPLYGFTGVELRPEGSIRLSVTLGSHPKQV 181
            LVD GSS D++  +A+ +MG+    L P  A L GF G  ++  G     +  GS   + 
Sbjct: 586  LVDGGSSADVIFAEAYAKMGFPTQALTPAPASLCGFGGEAVQVLGQALSMIAFGSGENRR 645

Query: 182  THMINFLVVKAPSAYNIIFGRTGLNKFKAISSTYHLKMKFPTPAGVGEVKGDQKIARSCY 361
               + F VV  P  YN IFGR  LNKF+AIS   +LK+K P PAGV  VKG Q  A    
Sbjct: 646  EEQVLFDVVDIPYNYNGIFGRATLNKFEAISHHNYLKLKMPGPAGVIVVKGLQPSA---- 701

Query: 362  LMTLKSSSGGGQVLPVDSLDVETEGR------MRAEPMEQLVPIKIDEADPEKITYLGSA 523
                 +S G   ++     +VE E         +  P  +++ +++D+ADP K+  LG  
Sbjct: 702  -----ASKGDLAIINRAVHNVEAEPHDLPKHVPKPTPHGKIIKVQMDDADPTKLVSLGGN 756

Query: 524  LQSDIKERLTRFLKENKEVFAWTPEDMPGIDPHVITHHLNVDPAKKPIKQKKRIFAPERQ 703
            +  +  E +   LK+N  +FAW+P ++ G+   +I HHL V P  KP KQK R  + +RQ
Sbjct: 757  MGEEEAESILEVLKKNIGIFAWSPVEVGGVSTDLIMHHLAVKPEAKPRKQKLRKMSADRQ 816

Query: 704  KAINEEVDKLLKAKIITEIQYPEWLANPVMVRKPSGKWRMCIDFTDLNNACPKDCFPLPR 883
            +A   EV KLL+A++I EI +PEWLANPV+VRK +GKWR+C+DFTDLN  CPKD FPLPR
Sbjct: 817  EAAKAEVQKLLRARVIQEIDHPEWLANPVLVRKSNGKWRICVDFTDLNKVCPKDDFPLPR 876

Query: 884  IDILIDATAGHELLSFMDAFSGYNQIRMDESDTPKVSFITDLG 1012
            ID L+D+TAG EL+SF+DA+SGY+QI M+  D PK +FIT  G
Sbjct: 877  IDQLVDSTAGCELMSFLDAYSGYHQIHMNPPDIPKTAFITPFG 919


>gb|AAL58173.1|AC093181_19 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1931

 Score =  284 bits (726), Expect = 5e-74
 Identities = 156/343 (45%), Positives = 206/343 (60%), Gaps = 6/343 (1%)
 Frame = +2

Query: 2    LVDNGSSIDILHYKAFKEMGYSNNQLVPVTAPLYGFTGVELRPEGSIRLSVTLGSHPKQV 181
            LVD GSS D++  +A+  MG     L P    L+GF G  ++  G   L +  GS   + 
Sbjct: 805  LVDGGSSADVIFAEAYATMGLPTQSLTPAPTSLHGFGGEAVQVLGQALLLIAFGSGENRR 864

Query: 182  THMINFLVVKAPSAYNIIFGRTGLNKFKAISSTYHLKMKFPTPAGVGEVKGDQKIARSCY 361
               I F VV  P  YN IFGR  LNKF+AI    +LK+K P P  V  VKG Q  A    
Sbjct: 865  EEQILFDVVDIPYNYNAIFGRATLNKFEAICHHNYLKLKMPGPTWVIVVKGLQPSA---- 920

Query: 362  LMTLKSSSGGGQVLPVDSLDVETEGRMRAEPMEQ------LVPIKIDEADPEKITYLGSA 523
                 +S G   ++      VETE   R + M +      +  ++ID+ADP K+  LG  
Sbjct: 921  -----ASKGDLAIINRAVYSVETEPHERPKHMPKPTRHGKITKMQIDDADPIKLVSLGGD 975

Query: 524  LQSDIKERLTRFLKENKEVFAWTPEDMPGIDPHVITHHLNVDPAKKPIKQKKRIFAPERQ 703
            +  +  E +   LK+N ++FAW+P ++ G+   +I HHL V P  KP KQK R  + +RQ
Sbjct: 976  MGEEEVESILEVLKKNIDIFAWSPNEVGGVPTDLIMHHLAVKPDIKPRKQKLRKMSADRQ 1035

Query: 704  KAINEEVDKLLKAKIITEIQYPEWLANPVMVRKPSGKWRMCIDFTDLNNACPKDCFPLPR 883
            +A   E+ KLL+A +I EI +PEWLANPV+VRK +GKWRMC+DFTDLN ACPKD FPLPR
Sbjct: 1036 EAAKAEIQKLLRAGVIQEIDHPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKDDFPLPR 1095

Query: 884  IDILIDATAGHELLSFMDAFSGYNQIRMDESDTPKVSFITDLG 1012
            ID L+D+TAG EL+SF+DA+SGY+QI M+  D PK SFIT  G
Sbjct: 1096 IDQLVDSTAGCELMSFLDAYSGYHQIHMNPLDIPKTSFITPFG 1138


>gb|AAP53331.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 2035

 Score =  284 bits (726), Expect = 5e-74
 Identities = 156/343 (45%), Positives = 206/343 (60%), Gaps = 6/343 (1%)
 Frame = +2

Query: 2    LVDNGSSIDILHYKAFKEMGYSNNQLVPVTAPLYGFTGVELRPEGSIRLSVTLGSHPKQV 181
            LVD GSS D++  +A+  MG     L P    L+GF G  ++  G   L +  GS   + 
Sbjct: 882  LVDGGSSADVIFAEAYATMGLPTQSLTPAPTSLHGFGGEAVQVLGQALLLIAFGSGENRR 941

Query: 182  THMINFLVVKAPSAYNIIFGRTGLNKFKAISSTYHLKMKFPTPAGVGEVKGDQKIARSCY 361
               I F VV  P  YN IFGR  LNKF+AI    +LK+K P P  V  VKG Q  A    
Sbjct: 942  EEQILFDVVDIPYNYNAIFGRATLNKFEAICHHNYLKLKMPGPTWVIVVKGLQPSA---- 997

Query: 362  LMTLKSSSGGGQVLPVDSLDVETEGRMRAEPMEQ------LVPIKIDEADPEKITYLGSA 523
                 +S G   ++      VETE   R + M +      +  ++ID+ADP K+  LG  
Sbjct: 998  -----ASKGDLAIINRAVYSVETEPHERPKHMPKPTRHGKITKMQIDDADPIKLVSLGGD 1052

Query: 524  LQSDIKERLTRFLKENKEVFAWTPEDMPGIDPHVITHHLNVDPAKKPIKQKKRIFAPERQ 703
            +  +  E +   LK+N ++FAW+P ++ G+   +I HHL V P  KP KQK R  + +RQ
Sbjct: 1053 MGEEEVESILEVLKKNIDIFAWSPNEVGGVPTDLIMHHLAVKPDIKPRKQKLRKMSADRQ 1112

Query: 704  KAINEEVDKLLKAKIITEIQYPEWLANPVMVRKPSGKWRMCIDFTDLNNACPKDCFPLPR 883
            +A   E+ KLL+A +I EI +PEWLANPV+VRK +GKWRMC+DFTDLN ACPKD FPLPR
Sbjct: 1113 EAAKAEIQKLLRAGVIQEIDHPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKDDFPLPR 1172

Query: 884  IDILIDATAGHELLSFMDAFSGYNQIRMDESDTPKVSFITDLG 1012
            ID L+D+TAG EL+SF+DA+SGY+QI M+  D PK SFIT  G
Sbjct: 1173 IDQLVDSTAGCELMSFLDAYSGYHQIHMNPLDIPKTSFITPFG 1215


>gb|AAM01123.1|AC108884_5 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431922|gb|AAP53628.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1292

 Score =  283 bits (725), Expect = 6e-74
 Identities = 157/343 (45%), Positives = 206/343 (60%), Gaps = 6/343 (1%)
 Frame = +2

Query: 2    LVDNGSSIDILHYKAFKEMGYSNNQLVPVTAPLYGFTGVELRPEGSIRLSVTLGSHPKQV 181
            LVD GSS D++  +A+ +MG     L P    L GF G  ++  G   L +  GS   + 
Sbjct: 378  LVDGGSSADVIFAEAYAKMGLPTQALTPAPVSLRGFGGEAVQVLGQTLLLIAFGSGENRR 437

Query: 182  THMINFLVVKAPSAYNIIFGRTGLNKFKAISSTYHLKMKFPTPAGVGEVKGDQKIARSCY 361
               I F VV  P  YN IFGR  LNKF+AIS   +LK+K P P  V  VKG Q  A    
Sbjct: 438  EEQILFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMPGPTAVIVVKGLQPSA---- 493

Query: 362  LMTLKSSSGGGQVLPVDSLDVETEGRMRAEPMEQLVP------IKIDEADPEKITYLGSA 523
                 +S G   ++      VETE   R + M +  P      ++ID+ DP K+  LG  
Sbjct: 494  -----TSKGDLAIIHRAVHSVETEPHERLKHMPKPTPHSKMTTVQIDDVDPTKLVSLGGD 548

Query: 524  LQSDIKERLTRFLKENKEVFAWTPEDMPGIDPHVITHHLNVDPAKKPIKQKKRIFAPERQ 703
            +     E +   LK+N ++FAW+P+++ G+  ++I HHL V P  KP KQK R  + +RQ
Sbjct: 549  MGEGELESILEVLKKNIDIFAWSPDEVGGVPANLIMHHLAVKPDIKPRKQKLRKMSADRQ 608

Query: 704  KAINEEVDKLLKAKIITEIQYPEWLANPVMVRKPSGKWRMCIDFTDLNNACPKDCFPLPR 883
            +A   EV KLL+A +I EI +PEWLANPV+VRK +GKWRMC+DFTDLN ACPKD FPLPR
Sbjct: 609  EAAKAEVQKLLRAGVIQEINHPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKDDFPLPR 668

Query: 884  IDILIDATAGHELLSFMDAFSGYNQIRMDESDTPKVSFITDLG 1012
            ID L+D+TA  EL+SF+DA+SGY+QI M+  D PK SFIT  G
Sbjct: 669  IDQLVDSTARCELMSFLDAYSGYHQIHMNPLDIPKTSFITPFG 711


>emb|CAD40452.2| OSJNBa0041M21.10 [Oryza sativa Japonica Group]
            gi|38343994|emb|CAD40359.2| OSJNBa0093P23.5 [Oryza sativa
            Japonica Group]
          Length = 2074

 Score =  283 bits (725), Expect = 6e-74
 Identities = 153/338 (45%), Positives = 207/338 (61%), Gaps = 1/338 (0%)
 Frame = +2

Query: 2    LVDNGSSIDILHYKAFKEMGYSNNQLVPVTAPLYGFTGVELRPEGSIRLSVTLGSHPKQV 181
            LVD GSS D+++ +A+ +MG     L P    L GF+G  ++  G   L +  GS   + 
Sbjct: 1483 LVDGGSSADVIYAEAYAKMGLPTQALTPALTSLRGFSGEAVQVLGQALLLIAFGSGENRR 1542

Query: 182  THMINFLVVKAPSAYNIIFGRTGLNKFKAISSTYHLKMKFPTPAGVGEVKGDQKIARS-C 358
               I F VV  P  YN IFGR  LNK +AIS   +LK+K P P GV  VKG Q  A S C
Sbjct: 1543 EEQILFDVVNIPYNYNAIFGRATLNKLEAISHHNYLKLKMPGPTGVIVVKGLQPSAASKC 1602

Query: 359  YLMTLKSSSGGGQVLPVDSLDVETEGRMRAEPMEQLVPIKIDEADPEKITYLGSALQSDI 538
             L  +  +    +  P +      +   +  P  ++  ++I++ADP K+  LG  +  + 
Sbjct: 1603 DLAIINRAVHNVKTEPHE----RPKHTPKPTPHGKVTKVQINDADPTKLVSLGGDMGEEE 1658

Query: 539  KERLTRFLKENKEVFAWTPEDMPGIDPHVITHHLNVDPAKKPIKQKKRIFAPERQKAINE 718
             E +   LK+N ++FAW+P+++ G+   +I HHL V P  KP KQK R  + +RQ+A   
Sbjct: 1659 VESILEVLKKNIDIFAWSPDEVGGVPADLIMHHLAVKPNIKPRKQKLRKMSADRQEATKT 1718

Query: 719  EVDKLLKAKIITEIQYPEWLANPVMVRKPSGKWRMCIDFTDLNNACPKDCFPLPRIDILI 898
            EV KLL+A +I EI +PEWLANPV+VRK +GKWRMC+DFTDLN ACPK  FPLPRID L+
Sbjct: 1719 EVQKLLRAGVIQEIDHPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKHDFPLPRIDQLV 1778

Query: 899  DATAGHELLSFMDAFSGYNQIRMDESDTPKVSFITDLG 1012
            D TAG EL+SF+DA+SGY+QI M+  D PK SFIT  G
Sbjct: 1779 DLTAGCELMSFLDAYSGYHQIHMNPLDIPKTSFITPFG 1816


>emb|CAH66268.1| OSIGBa0136B09.4 [Oryza sativa Indica Group]
          Length = 1348

 Score =  283 bits (725), Expect = 6e-74
 Identities = 153/338 (45%), Positives = 207/338 (61%), Gaps = 1/338 (0%)
 Frame = +2

Query: 2    LVDNGSSIDILHYKAFKEMGYSNNQLVPVTAPLYGFTGVELRPEGSIRLSVTLGSHPKQV 181
            LVD GSS D+++ +A+ +MG     L P    L GF+G  ++  G   L +  GS   + 
Sbjct: 757  LVDGGSSADVIYAEAYAKMGLPTQALTPALTSLRGFSGEAVQVLGQALLLIAFGSGENRR 816

Query: 182  THMINFLVVKAPSAYNIIFGRTGLNKFKAISSTYHLKMKFPTPAGVGEVKGDQKIARS-C 358
               I F VV  P  YN IFGR  LNK +AIS   +LK+K P P GV  VKG Q  A S C
Sbjct: 817  EEQILFDVVNIPYNYNAIFGRATLNKLEAISHHNYLKLKMPGPTGVIVVKGLQPSAASKC 876

Query: 359  YLMTLKSSSGGGQVLPVDSLDVETEGRMRAEPMEQLVPIKIDEADPEKITYLGSALQSDI 538
             L  +  +    +  P +      +   +  P  ++  ++I++ADP K+  LG  +  + 
Sbjct: 877  DLAIINRAVHNVKTEPHE----RPKHTPKPTPHGKVTKVQINDADPTKLVSLGGDMGEEE 932

Query: 539  KERLTRFLKENKEVFAWTPEDMPGIDPHVITHHLNVDPAKKPIKQKKRIFAPERQKAINE 718
             E +   LK+N ++FAW+P+++ G+   +I HHL V P  KP KQK R  + +RQ+A   
Sbjct: 933  VESILEVLKKNIDIFAWSPDEVGGVPADLIMHHLAVKPNIKPRKQKLRKMSADRQEATKT 992

Query: 719  EVDKLLKAKIITEIQYPEWLANPVMVRKPSGKWRMCIDFTDLNNACPKDCFPLPRIDILI 898
            EV KLL+A +I EI +PEWLANPV+VRK +GKWRMC+DFTDLN ACPK  FPLPRID L+
Sbjct: 993  EVQKLLRAGVIQEIDHPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKHDFPLPRIDQLV 1052

Query: 899  DATAGHELLSFMDAFSGYNQIRMDESDTPKVSFITDLG 1012
            D TAG EL+SF+DA+SGY+QI M+  D PK SFIT  G
Sbjct: 1053 DLTAGCELMSFLDAYSGYHQIHMNPLDIPKTSFITPFG 1090


>gb|AAK50400.1|AC021891_1 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1291

 Score =  283 bits (725), Expect = 6e-74
 Identities = 157/343 (45%), Positives = 206/343 (60%), Gaps = 6/343 (1%)
 Frame = +2

Query: 2    LVDNGSSIDILHYKAFKEMGYSNNQLVPVTAPLYGFTGVELRPEGSIRLSVTLGSHPKQV 181
            LVD GSS D++  +A+ +MG     L P    L GF G  ++  G   L +  GS   + 
Sbjct: 445  LVDGGSSADVIFAEAYAKMGLPTQALTPAPVSLRGFGGEAVQVLGQTLLLIAFGSGENRR 504

Query: 182  THMINFLVVKAPSAYNIIFGRTGLNKFKAISSTYHLKMKFPTPAGVGEVKGDQKIARSCY 361
               I F VV  P  YN IFGR  LNKF+AIS   +LK+K P P  V  VKG Q  A    
Sbjct: 505  EEQILFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMPGPTAVIVVKGLQPSA---- 560

Query: 362  LMTLKSSSGGGQVLPVDSLDVETEGRMRAEPMEQLVP------IKIDEADPEKITYLGSA 523
                 +S G   ++      VETE   R + M +  P      ++ID+ DP K+  LG  
Sbjct: 561  -----TSKGDLAIIHRAVHSVETEPHERLKHMPKPTPHSKMTTVQIDDVDPTKLVSLGGD 615

Query: 524  LQSDIKERLTRFLKENKEVFAWTPEDMPGIDPHVITHHLNVDPAKKPIKQKKRIFAPERQ 703
            +     E +   LK+N ++FAW+P+++ G+  ++I HHL V P  KP KQK R  + +RQ
Sbjct: 616  MGEGELESILEVLKKNIDIFAWSPDEVGGVPANLIMHHLAVKPDIKPRKQKLRKMSADRQ 675

Query: 704  KAINEEVDKLLKAKIITEIQYPEWLANPVMVRKPSGKWRMCIDFTDLNNACPKDCFPLPR 883
            +A   EV KLL+A +I EI +PEWLANPV+VRK +GKWRMC+DFTDLN ACPKD FPLPR
Sbjct: 676  EAAKAEVQKLLRAGVIQEINHPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKDDFPLPR 735

Query: 884  IDILIDATAGHELLSFMDAFSGYNQIRMDESDTPKVSFITDLG 1012
            ID L+D+TA  EL+SF+DA+SGY+QI M+  D PK SFIT  G
Sbjct: 736  IDQLVDSTARCELMSFLDAYSGYHQIHMNPLDIPKTSFITPFG 778


>gb|ABB47013.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1475

 Score =  283 bits (724), Expect = 8e-74
 Identities = 152/340 (44%), Positives = 210/340 (61%), Gaps = 4/340 (1%)
 Frame = +2

Query: 5    VDNGSSIDILHYKAFKEMGYSNNQLVPVTAPLYGFTGVELRPEGSIRLSVTLGSHPKQVT 184
            VD GSS D++  +A+ +MG     L P  A L GF    ++  G   L +  GS   +  
Sbjct: 441  VDGGSSADVIFAEAYAKMGLPTQALTPAPASLRGFGREAVQVLGQALLLIAFGSGESRRE 500

Query: 185  HMINFLVVKAPSAYNIIFGRTGLNKFKAISSTYHLKMKFPTPAGVGEVKGDQKIARSCYL 364
              + F VV  P  YN I GR  LNKF+AIS   +L +K P P GV  VKG Q +A S   
Sbjct: 501  EQVLFDVVDIPYNYNAILGRATLNKFEAISHHNYLMLKMPGPVGVIVVKGLQPLAASKGD 560

Query: 365  MTLKSSSGGGQVLPVDSLDVETEGRMRAEPME----QLVPIKIDEADPEKITYLGSALQS 532
            + + + +       V +L+ E   R++  P      ++V ++ID+ADP K+  LG  +  
Sbjct: 561  LAIINRA-------VHNLEAELHSRLKHAPKPTPHGKIVKVQIDDADPAKLISLGDGMGE 613

Query: 533  DIKERLTRFLKENKEVFAWTPEDMPGIDPHVITHHLNVDPAKKPIKQKKRIFAPERQKAI 712
               E +   LK+N ++FAW+P+++ G+   +I HHL V P  KP KQK R  + +RQ+A 
Sbjct: 614  QEAEGILAVLKKNIDIFAWSPDEVGGVLTDLIMHHLAVKPDAKPRKQKLRKMSADRQEAA 673

Query: 713  NEEVDKLLKAKIITEIQYPEWLANPVMVRKPSGKWRMCIDFTDLNNACPKDCFPLPRIDI 892
              EV KLL+A +I EI +PEWLANPV+VRK + KWRMC+DFTDLN ACPKD FPLPRID 
Sbjct: 674  KAEVQKLLRAGVIQEIDHPEWLANPVLVRKSNDKWRMCVDFTDLNKACPKDDFPLPRIDQ 733

Query: 893  LIDATAGHELLSFMDAFSGYNQIRMDESDTPKVSFITDLG 1012
            L+D+TAG EL+SF+DA+SGY+QI+M+  D PK++FIT  G
Sbjct: 734  LVDSTAGCELMSFLDAYSGYHQIQMNPPDIPKIAFITPFG 773


>ref|XP_006488688.1| PREDICTED: uncharacterized protein LOC102623105 [Citrus sinensis]
          Length = 1407

 Score =  281 bits (720), Expect = 2e-73
 Identities = 151/338 (44%), Positives = 202/338 (59%), Gaps = 1/338 (0%)
 Frame = +2

Query: 2    LVDNGSSIDILHYKAFKEMGYSNNQLVPVTAPLYGFTGVELRPEGSIRLSVTLGSHPKQV 181
            LVD  SS+D+L     +EMG ++ +L      L GF G +L P G ++L +T+GS P + 
Sbjct: 688  LVDTWSSVDVLFKSTLEEMGIADRKLEYTNTSLKGFGGGKLVPLGVVKLPITVGSPPTER 747

Query: 182  THMINFLVVKAPSAYNIIFGRTGLNKFKAISSTYHLKMKFPTPAGVGEVKGDQKIARSCY 361
            T +++F+VV     Y +I GR  L   KA+ S ++L +K+     VG V+GDQ+IARSCY
Sbjct: 748  TMILDFVVVDEEGPYQMILGRPFLRMSKAVLSNHYLALKYRVNGVVGVVRGDQRIARSCY 807

Query: 362  LMTLKSSSGGGQVLPVDSLDVETEGRM-RAEPMEQLVPIKIDEADPEKITYLGSALQSDI 538
                  SS   + + + SLD   E +  R EP+E L     D                  
Sbjct: 808  ------SSAAREAMQITSLDTRVENKTGRQEPVEDLETAHAD------------------ 843

Query: 539  KERLTRFLKENKEVFAWTPEDMPGIDPHVITHHLNVDPAKKPIKQKKRIFAPERQKAINE 718
                         VFAWT EDMPGIDP V  H L +    + ++QK+R F  ER +A+N+
Sbjct: 844  -------------VFAWTHEDMPGIDPEVACHKLAMKKGARAVRQKRRCFNQERYEAVND 890

Query: 719  EVDKLLKAKIITEIQYPEWLANPVMVRKPSGKWRMCIDFTDLNNACPKDCFPLPRIDILI 898
            EV+KLL+A  I E+ YPEW++N V+V+K +GKWRMC+DFTDLN ACPKD FPLP+ID L+
Sbjct: 891  EVEKLLRAGFIREVNYPEWISNVVLVKKANGKWRMCVDFTDLNKACPKDSFPLPKIDQLV 950

Query: 899  DATAGHELLSFMDAFSGYNQIRMDESDTPKVSFITDLG 1012
            D+TAGH LLSFMDAFSGYNQI M E D    +FIT+ G
Sbjct: 951  DSTAGHGLLSFMDAFSGYNQIPMYEPDEESTAFITNQG 988


>gb|ABB47092.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1064

 Score =  279 bits (714), Expect = 1e-72
 Identities = 155/343 (45%), Positives = 205/343 (59%), Gaps = 6/343 (1%)
 Frame = +2

Query: 2    LVDNGSSIDILHYKAFKEMGYSNNQLVPVTAPLYGFTGVELRPEGSIRLSVTLGSHPKQV 181
            LVD GSS DI+  +A+ +MG     L P  A L GF G  ++  G   L +  GS   + 
Sbjct: 57   LVDEGSSADIIFAEAYAKMGLPTQALTPAPASLRGFGGEPVQVLGQALLLIAFGSGDNRR 116

Query: 182  THMINFLVVKAPSAYNIIFGRTGLNKFKAISSTYHLKMKFPTPAGVGEVKGDQKIARSCY 361
               I F VV  P  YN IFGR  LNKF+AIS   +LK+K P P GV  VKG Q  A    
Sbjct: 117  EEQILFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMPGPTGVIVVKGLQPSA---- 172

Query: 362  LMTLKSSSGGGQVLPVDSLDVETE------GRMRAEPMEQLVPIKIDEADPEKITYLGSA 523
                 S  G   ++      VETE         +  P  ++  ++ID+A+P K+  LG  
Sbjct: 173  -----SPKGDLAIINRAVHSVETELHEWSKHTPKPTPHAKITKMQIDDANPTKLVSLGDD 227

Query: 524  LQSDIKERLTRFLKENKEVFAWTPEDMPGIDPHVITHHLNVDPAKKPIKQKKRIFAPERQ 703
            +  +  E   + LK+N ++FAW+P+++ G+   +I HHL V P  KP KQK    + +RQ
Sbjct: 228  MGEEEVESTLQVLKKNIDIFAWSPDEVGGVLADLIMHHLAVKPDIKPRKQKLHKMSADRQ 287

Query: 704  KAINEEVDKLLKAKIITEIQYPEWLANPVMVRKPSGKWRMCIDFTDLNNACPKDCFPLPR 883
            +A   EV KLL+  +I EI +PEWLANP++VRK +GKWRMC+DFTDLN ACPKD FPLPR
Sbjct: 288  EAAKAEVQKLLRVGVIQEIDHPEWLANPILVRKSNGKWRMCVDFTDLNKACPKDDFPLPR 347

Query: 884  IDILIDATAGHELLSFMDAFSGYNQIRMDESDTPKVSFITDLG 1012
            ID L+D+TAG EL+SF+DA+ GY+QI M+  D PK SFIT  G
Sbjct: 348  IDQLVDSTAGCELMSFLDAYPGYHQIHMNPPDIPKTSFITPFG 390


>dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]
          Length = 1542

 Score =  279 bits (714), Expect = 1e-72
 Identities = 150/338 (44%), Positives = 211/338 (62%), Gaps = 1/338 (0%)
 Frame = +2

Query: 2    LVDNGSSIDILHYKAFKEMGYSNNQLVPVTAPLYGFTGVELRPEGSIRLSVTLGSHPKQV 181
            LVD GSS+DIL   A  +MG S+ +L      L GF G  L P G   L +T+GS P + 
Sbjct: 567  LVDTGSSVDILFKSALDDMGISDLKLERTNTSLKGFGGGRLTPMGINELPITVGSKPFER 626

Query: 182  THMINFLVVKAPSAYNIIFGRTGLNKFKAISSTYHLKMKFPTPAGVGEVKGDQKIARSCY 361
              M+ F+VV+  S Y +I GR  +   + + ST++L +K+     VG VKG QK+ RSCY
Sbjct: 627  IVMLYFVVVEERSPYQMILGRPFIRISQCVISTHYLALKYRVNGVVGVVKGVQKMTRSCY 686

Query: 362  LMTLKSSSGGGQVLPVDSLDVETEGRM-RAEPMEQLVPIKIDEADPEKITYLGSALQSDI 538
                K      + L V SLD   + +  R EP+E+L  + +++++P ++  +GS L   I
Sbjct: 687  ATAAK------ETLQVTSLDNRGDSKKGRQEPVEKLDEVFVNKSNPSRMVKIGSGLGETI 740

Query: 539  KERLTRFLKENKEVFAWTPEDMPGIDPHVITHHLNVDPAKKPIKQKKRIFAPERQKAINE 718
            K  L ++L+   ++FAW+ EDMP ID  +  H L +     P++QK+R F  ER +AIN 
Sbjct: 741  KGELVKYLQSYADIFAWSHEDMPRIDHGIAYHKLAIRKGAMPVRQKRRCFNQERYEAINA 800

Query: 719  EVDKLLKAKIITEIQYPEWLANPVMVRKPSGKWRMCIDFTDLNNACPKDCFPLPRIDILI 898
            EV++LLKA  I + +Y EW++N ++V+K S   RMC+DFTDLN ACPKD FPL +ID L+
Sbjct: 801  EVEQLLKAGFIRKTKYSEWISNVILVKKAS---RMCVDFTDLNKACPKDSFPLQKIDQLV 857

Query: 899  DATAGHELLSFMDAFSGYNQIRMDESDTPKVSFITDLG 1012
            D+TAGH LLSFMD FSGYNQI MDE D    +FIT++G
Sbjct: 858  DSTAGHSLLSFMDTFSGYNQIPMDEQDEESTTFITNIG 895


>gb|AAK51571.1|AC022352_7 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1497

 Score =  279 bits (714), Expect = 1e-72
 Identities = 155/343 (45%), Positives = 205/343 (59%), Gaps = 6/343 (1%)
 Frame = +2

Query: 2    LVDNGSSIDILHYKAFKEMGYSNNQLVPVTAPLYGFTGVELRPEGSIRLSVTLGSHPKQV 181
            LVD GSS DI+  +A+ +MG     L P  A L GF G  ++  G   L +  GS   + 
Sbjct: 458  LVDEGSSADIIFAEAYAKMGLPTQALTPAPASLRGFGGEPVQVLGQALLLIAFGSGDNRR 517

Query: 182  THMINFLVVKAPSAYNIIFGRTGLNKFKAISSTYHLKMKFPTPAGVGEVKGDQKIARSCY 361
               I F VV  P  YN IFGR  LNKF+AIS   +LK+K P P GV  VKG Q  A    
Sbjct: 518  EEQILFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMPGPTGVIVVKGLQPSA---- 573

Query: 362  LMTLKSSSGGGQVLPVDSLDVETE------GRMRAEPMEQLVPIKIDEADPEKITYLGSA 523
                 S  G   ++      VETE         +  P  ++  ++ID+A+P K+  LG  
Sbjct: 574  -----SPKGDLAIINRAVHSVETELHEWSKHTPKPTPHAKITKMQIDDANPTKLVSLGDD 628

Query: 524  LQSDIKERLTRFLKENKEVFAWTPEDMPGIDPHVITHHLNVDPAKKPIKQKKRIFAPERQ 703
            +  +  E   + LK+N ++FAW+P+++ G+   +I HHL V P  KP KQK    + +RQ
Sbjct: 629  MGEEEVESTLQVLKKNIDIFAWSPDEVGGVLADLIMHHLAVKPDIKPRKQKLHKMSADRQ 688

Query: 704  KAINEEVDKLLKAKIITEIQYPEWLANPVMVRKPSGKWRMCIDFTDLNNACPKDCFPLPR 883
            +A   EV KLL+  +I EI +PEWLANP++VRK +GKWRMC+DFTDLN ACPKD FPLPR
Sbjct: 689  EAAKAEVQKLLRVGVIQEIDHPEWLANPILVRKSNGKWRMCVDFTDLNKACPKDDFPLPR 748

Query: 884  IDILIDATAGHELLSFMDAFSGYNQIRMDESDTPKVSFITDLG 1012
            ID L+D+TAG EL+SF+DA+ GY+QI M+  D PK SFIT  G
Sbjct: 749  IDQLVDSTAGCELMSFLDAYPGYHQIHMNPPDIPKTSFITPFG 791


>gb|ABF97503.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1172

 Score =  278 bits (711), Expect = 3e-72
 Identities = 153/344 (44%), Positives = 210/344 (61%), Gaps = 7/344 (2%)
 Frame = +2

Query: 2    LVDNGSSIDILHYKAFKEMGYSNNQLVPVTAPLYGFTGVELRPEGSIRLSVTLGSHPKQV 181
            LVD GSS D++  +A+ +MG +   L P    L GF G  ++  G  +L V  G+   + 
Sbjct: 390  LVDGGSSTDVIFAEAYAKMGLTTQALTPAPTSLRGFGGEAVQVLGQAQLIVAFGTGENRR 449

Query: 182  THMINFLVVKAPSAYNIIFGRTGLNKFKAISSTYHLKMKFPTPAGVGEVKGDQKIARSCY 361
               + F VV  P  YN IFGR  LNKF+ IS   +LK+K   PAGV  +KG         
Sbjct: 450  EEQVLFDVVDIPYNYNAIFGRATLNKFEVISHHNYLKLKMSGPAGVIVIKG--------- 500

Query: 362  LMTLKSSSGGGQVLPVDSLDVETEGRMRAE------PMEQLVPIKIDEADPEKITYLGSA 523
            L    +S G   ++     +VE E   RA+      P  +++ ++ID+ADP K+  LG  
Sbjct: 501  LHPSAASKGDLAIINKAVHNVEAEPHDRAKHVPKPAPHGKIIKMQIDDADPIKLVSLGGG 560

Query: 524  -LQSDIKERLTRFLKENKEVFAWTPEDMPGIDPHVITHHLNVDPAKKPIKQKKRIFAPER 700
             +  +  + +   LK+N ++FAW P+++ G+   +I HHL V P  KP KQK    + +R
Sbjct: 561  DMGEEEAKNILEVLKKNIDIFAWGPDEVGGVSADLIMHHLAVKPDAKPRKQKLCKMSADR 620

Query: 701  QKAINEEVDKLLKAKIITEIQYPEWLANPVMVRKPSGKWRMCIDFTDLNNACPKDCFPLP 880
            Q+A   EV KLLKA +I EI +PEWLAN V+VRK +GKWRMC+DFTDLN ACPKD FPLP
Sbjct: 621  QEAAKAEVQKLLKAGVIQEIDHPEWLANSVLVRKSNGKWRMCVDFTDLNKACPKDDFPLP 680

Query: 881  RIDILIDATAGHELLSFMDAFSGYNQIRMDESDTPKVSFITDLG 1012
            RID L+D+TAG EL+SF+DA+SGY+QIRM+ +D PK +FIT  G
Sbjct: 681  RIDRLVDSTAGCELMSFLDAYSGYHQIRMNPADIPKTAFITPFG 724