BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00023130
         (282 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ...    64   2e-08
ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,...    62   1e-07
ref|XP_006376620.1| RNA polymerase sigma subunit SigE family pro...    56   6e-06

>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|302143685|emb|CBI22546.3| unnamed protein product
           [Vitis vinifera]
          Length = 518

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 27/60 (45%), Positives = 41/60 (68%)
 Frame = -3

Query: 181 PLGLSARFSTHRSPAQRSVILAFKTDKSKNKGLVATNEPVSLSTDTGKEKTRRIRATKSP 2
           P GL+A+FS H++P +R ++LAFK DK+KN  LV  +EP+ L  +T K+  +R+R    P
Sbjct: 16  PFGLNAKFSNHQTPLRRPLVLAFKADKAKNIALVTPHEPIPLPIETSKDHKKRLRRASKP 75


>ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 516

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 30/55 (54%), Positives = 39/55 (70%)
 Frame = -3

Query: 181 PLGLSARFSTHRSPAQRSVILAFKTDKSKNKGLVATNEPVSLSTDTGKEKTRRIR 17
           PLGLS+RFST   P +R VI++FK DK+KN  L+A  E +SLS +T KE  +R R
Sbjct: 14  PLGLSSRFSTRLCPLKRPVIVSFKKDKTKNTTLIAPKESISLSIETSKENEKRSR 68


>ref|XP_006376620.1| RNA polymerase sigma subunit SigE family protein [Populus
           trichocarpa] gi|550326141|gb|ERP54417.1| RNA polymerase
           sigma subunit SigE family protein [Populus trichocarpa]
          Length = 512

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 29/59 (49%), Positives = 40/59 (67%)
 Frame = -3

Query: 181 PLGLSARFSTHRSPAQRSVILAFKTDKSKNKGLVATNEPVSLSTDTGKEKTRRIRATKS 5
           PLGLS +FST+ S A+R +I+AFK +KS N  LVA +E + L  +T K K R  ++ KS
Sbjct: 14  PLGLSTKFSTYGSTAKRPLIVAFKANKSNNTSLVAPHEQIPLPVETTKGKKRLGKSKKS 72