BLASTX nr result
ID: Cocculus23_contig00021663
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00021663
(297 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007201172.1| hypothetical protein PRUPE_ppa003481mg [Prun... 107 1e-21
ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250... 105 9e-21
emb|CBI36868.3| unnamed protein product [Vitis vinifera] 105 9e-21
ref|XP_007050939.1| Pentatricopeptide repeat (PPR) superfamily p... 103 2e-20
ref|XP_004292662.1| PREDICTED: uncharacterized protein LOC101314... 100 4e-19
ref|XP_002523091.1| magnesium/proton exchanger, putative [Ricinu... 97 2e-18
ref|XP_006359847.1| PREDICTED: pentatricopeptide repeat-containi... 90 3e-16
ref|XP_006588587.1| PREDICTED: pentatricopeptide repeat-containi... 87 2e-15
ref|XP_007144329.1| hypothetical protein PHAVU_007G146900g [Phas... 85 9e-15
ref|XP_004495951.1| PREDICTED: pentatricopeptide repeat-containi... 83 5e-14
ref|XP_006292469.1| hypothetical protein CARUB_v10018699mg [Caps... 70 4e-10
ref|NP_191848.2| pentatricopeptide repeat-containing protein [Ar... 70 4e-10
emb|CAB83139.1| putative protein [Arabidopsis thaliana] 70 4e-10
ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp.... 69 5e-10
ref|XP_006402330.1| hypothetical protein EUTSA_v10006495mg [Eutr... 65 1e-08
ref|XP_007050855.1| Pentatricopeptide repeat superfamily protein... 57 3e-06
ref|XP_003577636.1| PREDICTED: pentatricopeptide repeat-containi... 56 6e-06
ref|NP_001170485.1| hypothetical protein [Zea mays] gi|238005588... 55 8e-06
>ref|XP_007201172.1| hypothetical protein PRUPE_ppa003481mg [Prunus persica]
gi|462396572|gb|EMJ02371.1| hypothetical protein
PRUPE_ppa003481mg [Prunus persica]
Length = 571
Score = 107 bits (268), Expect = 1e-21
Identities = 50/71 (70%), Positives = 57/71 (80%)
Frame = -2
Query: 218 MRTTSKLISSAHPTLHLSHPTPDSLIWNTLIRAHSQSLTRPTASPLSIYLRMRFHGVYPD 39
MR ++KLISS HPTLHLSHPTP+S +WNTLIRAH Q+ SPLS++LRMR HGV PD
Sbjct: 3 MRASAKLISSTHPTLHLSHPTPESFVWNTLIRAHVQATVPNPYSPLSVFLRMRLHGVVPD 62
Query: 38 FYTFPFLLQSF 6
TFPFLLQSF
Sbjct: 63 NRTFPFLLQSF 73
>ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 105 bits (261), Expect = 9e-21
Identities = 49/75 (65%), Positives = 60/75 (80%), Gaps = 3/75 (4%)
Frame = -2
Query: 218 MRTTSKLISSAHPTLHLSHPTPDSLIWNTLIRAHSQSLTRPTA---SPLSIYLRMRFHGV 48
M ++LISS HPTLH SHPT +S +WNTLIRAH Q+ +PT SP+SI++RMRFHGV
Sbjct: 1 MLLPTRLISSTHPTLHFSHPTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGV 60
Query: 47 YPDFYTFPFLLQSFS 3
PDF+TFPFLLQSF+
Sbjct: 61 QPDFHTFPFLLQSFA 75
>emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 105 bits (261), Expect = 9e-21
Identities = 49/75 (65%), Positives = 60/75 (80%), Gaps = 3/75 (4%)
Frame = -2
Query: 218 MRTTSKLISSAHPTLHLSHPTPDSLIWNTLIRAHSQSLTRPTA---SPLSIYLRMRFHGV 48
M ++LISS HPTLH SHPT +S +WNTLIRAH Q+ +PT SP+SI++RMRFHGV
Sbjct: 1 MLLPTRLISSTHPTLHFSHPTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGV 60
Query: 47 YPDFYTFPFLLQSFS 3
PDF+TFPFLLQSF+
Sbjct: 61 QPDFHTFPFLLQSFA 75
>ref|XP_007050939.1| Pentatricopeptide repeat (PPR) superfamily protein isoform 1
[Theobroma cacao] gi|590718992|ref|XP_007050940.1|
Pentatricopeptide repeat (PPR) superfamily protein
isoform 1 [Theobroma cacao] gi|508703200|gb|EOX95096.1|
Pentatricopeptide repeat (PPR) superfamily protein
isoform 1 [Theobroma cacao] gi|508703201|gb|EOX95097.1|
Pentatricopeptide repeat (PPR) superfamily protein
isoform 1 [Theobroma cacao]
Length = 525
Score = 103 bits (258), Expect = 2e-20
Identities = 46/72 (63%), Positives = 58/72 (80%)
Frame = -2
Query: 218 MRTTSKLISSAHPTLHLSHPTPDSLIWNTLIRAHSQSLTRPTASPLSIYLRMRFHGVYPD 39
MR +++ IS HPTLH +HPT +S IWNTLIR ++Q+ RPT +SIY+RMRFHGV PD
Sbjct: 1 MRASARHISPTHPTLHFAHPTLESFIWNTLIRGNAQATARPTFPTISIYIRMRFHGVSPD 60
Query: 38 FYTFPFLLQSFS 3
F+TFPFLLQSF+
Sbjct: 61 FHTFPFLLQSFN 72
>ref|XP_004292662.1| PREDICTED: uncharacterized protein LOC101314253 [Fragaria vesca
subsp. vesca]
Length = 1082
Score = 99.8 bits (247), Expect = 4e-19
Identities = 48/72 (66%), Positives = 57/72 (79%)
Frame = -2
Query: 218 MRTTSKLISSAHPTLHLSHPTPDSLIWNTLIRAHSQSLTRPTASPLSIYLRMRFHGVYPD 39
MR +SKLIS HP+L+LSHPTP+ +WNTLIRAH QS PT SP+S++ RMR HGV PD
Sbjct: 1 MRASSKLISLTHPSLNLSHPTPEPFVWNTLIRAHVQS-KPPTHSPISVFNRMRLHGVQPD 59
Query: 38 FYTFPFLLQSFS 3
TFPFLLQSF+
Sbjct: 60 NRTFPFLLQSFN 71
>ref|XP_002523091.1| magnesium/proton exchanger, putative [Ricinus communis]
gi|223537653|gb|EEF39276.1| magnesium/proton exchanger,
putative [Ricinus communis]
Length = 1015
Score = 97.4 bits (241), Expect = 2e-18
Identities = 46/79 (58%), Positives = 59/79 (74%)
Frame = -2
Query: 242 TSQPKHQTMRTTSKLISSAHPTLHLSHPTPDSLIWNTLIRAHSQSLTRPTASPLSIYLRM 63
T + MR ++KLISSAHPTL+ +H T +S WNT++R H Q+ R T P+S+YLRM
Sbjct: 14 TKSRQSAIMRASTKLISSAHPTLNFAHQTLESFTWNTILRFHVQASVR-THPPISVYLRM 72
Query: 62 RFHGVYPDFYTFPFLLQSF 6
R+HGV PDF+TFPFLLQSF
Sbjct: 73 RYHGVKPDFHTFPFLLQSF 91
>ref|XP_006359847.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like isoform X1 [Solanum tuberosum]
gi|565388163|ref|XP_006359848.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g62890-like isoform X2 [Solanum tuberosum]
Length = 449
Score = 90.1 bits (222), Expect = 3e-16
Identities = 44/71 (61%), Positives = 55/71 (77%), Gaps = 3/71 (4%)
Frame = -2
Query: 212 TTSKLISSAHPTLHLSHPTPDSLIWNTLIRAHSQSLTRPTA---SPLSIYLRMRFHGVYP 42
+T KLIS HP+L+L HPT D WNTLIRA+ Q +P++ +PLSI+LRMRFHGV+
Sbjct: 4 STRKLISLTHPSLNLWHPTVDCFTWNTLIRAYVQRTHQPSSPIHTPLSIFLRMRFHGVHI 63
Query: 41 DFYTFPFLLQS 9
D+YTFPFLLQS
Sbjct: 64 DYYTFPFLLQS 74
>ref|XP_006588587.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 568
Score = 87.4 bits (215), Expect = 2e-15
Identities = 42/74 (56%), Positives = 53/74 (71%), Gaps = 2/74 (2%)
Frame = -2
Query: 218 MRTTSKLISSAHPTLHLSHPTPDSLIWNTLIRAHSQSLTRPTASP--LSIYLRMRFHGVY 45
MR ++K IS HP+LHLSHP +S +WN LIRA ++S + A P LS+YLRMR H V
Sbjct: 1 MRASAKAISCTHPSLHLSHPNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVL 60
Query: 44 PDFYTFPFLLQSFS 3
PD +TFPFLLQS +
Sbjct: 61 PDLHTFPFLLQSIN 74
>ref|XP_007144329.1| hypothetical protein PHAVU_007G146900g [Phaseolus vulgaris]
gi|561017519|gb|ESW16323.1| hypothetical protein
PHAVU_007G146900g [Phaseolus vulgaris]
Length = 491
Score = 85.1 bits (209), Expect = 9e-15
Identities = 42/73 (57%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -2
Query: 218 MRTTSKLISSAHPTLHLSHPTPDSLIWNTLIRAHSQSLTRPT-ASPLSIYLRMRFHGVYP 42
MR +K IS HP+LHLSHP S +WN LIRA S+S PLS+YLRMR H V P
Sbjct: 1 MRGWNKAISHTHPSLHLSHPNIQSFVWNNLIRASSRSRVHSAFPPPLSLYLRMRLHAVLP 60
Query: 41 DFYTFPFLLQSFS 3
D +TFPFLLQS +
Sbjct: 61 DLHTFPFLLQSIN 73
>ref|XP_004495951.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Cicer arietinum]
Length = 571
Score = 82.8 bits (203), Expect = 5e-14
Identities = 41/73 (56%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -2
Query: 218 MRTTSKLISSAHPTLHLSHPTPDSLIWNTLIRAHSQSLTRPTA-SPLSIYLRMRFHGVYP 42
MR +K ISS HP+LHL HP +S +WN LIR + + SPLS+YLRMRFH V P
Sbjct: 1 MRGLTKAISSTHPSLHLFHPNVESFVWNNLIRFRVKFKPKLAHHSPLSLYLRMRFHAVTP 60
Query: 41 DFYTFPFLLQSFS 3
D +TFPFLLQS +
Sbjct: 61 DLHTFPFLLQSLN 73
>ref|XP_006292469.1| hypothetical protein CARUB_v10018699mg [Capsella rubella]
gi|482561176|gb|EOA25367.1| hypothetical protein
CARUB_v10018699mg [Capsella rubella]
Length = 571
Score = 69.7 bits (169), Expect = 4e-10
Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Frame = -2
Query: 203 KLISSAHPTLHLSHPTPDSLIWNTLIRAHSQSLT-RPTASPLSIYLRMRFHGVYPDFYTF 27
K I+ +P H+ + +S +WN +IRA Q+++ P SP+S+YLRMR HGV PDF+TF
Sbjct: 3 KAIAYTNPIFHIHNLKLESFVWNIIIRAIVQNVSPAPLHSPISVYLRMRHHGVRPDFHTF 62
Query: 26 PFLLQSF 6
PFLL F
Sbjct: 63 PFLLPCF 69
>ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116883|sp|Q683I9.1|PP295_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g62890 gi|51968398|dbj|BAD42891.1| putative protein
[Arabidopsis thaliana] gi|332646886|gb|AEE80407.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 573
Score = 69.7 bits (169), Expect = 4e-10
Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -2
Query: 218 MRTTSKLISSAHPTLHLSHPTPDSLIWNTLIRAHSQSLTRPTA-SPLSIYLRMRFHGVYP 42
M + +I+ A+P H+ H +S +WN +IRA +++ P SP+S+YLRMR H V P
Sbjct: 1 MSKGAAIIAYANPIFHIRHLKLESFLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSP 60
Query: 41 DFYTFPFLLQSF 6
DF+TFPFLL SF
Sbjct: 61 DFHTFPFLLPSF 72
>emb|CAB83139.1| putative protein [Arabidopsis thaliana]
Length = 558
Score = 69.7 bits (169), Expect = 4e-10
Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -2
Query: 218 MRTTSKLISSAHPTLHLSHPTPDSLIWNTLIRAHSQSLTRPTA-SPLSIYLRMRFHGVYP 42
M + +I+ A+P H+ H +S +WN +IRA +++ P SP+S+YLRMR H V P
Sbjct: 1 MSKGAAIIAYANPIFHIRHLKLESFLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSP 60
Query: 41 DFYTFPFLLQSF 6
DF+TFPFLL SF
Sbjct: 61 DFHTFPFLLPSF 72
>ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322531|gb|EFH52952.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 69.3 bits (168), Expect = 5e-10
Identities = 33/66 (50%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = -2
Query: 200 LISSAHPTLHLSHPTPDSLIWNTLIRAHSQSLTRPTA-SPLSIYLRMRFHGVYPDFYTFP 24
+IS A+P H+ H +S +WN +IRA +++ P SP+S+Y RMR H V PDF+TFP
Sbjct: 6 IISYANPIFHIRHLKLESFVWNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHTFP 65
Query: 23 FLLQSF 6
FLL SF
Sbjct: 66 FLLPSF 71
>ref|XP_006402330.1| hypothetical protein EUTSA_v10006495mg [Eutrema salsugineum]
gi|557103429|gb|ESQ43783.1| hypothetical protein
EUTSA_v10006495mg [Eutrema salsugineum]
Length = 566
Score = 65.1 bits (157), Expect = 1e-08
Identities = 31/60 (51%), Positives = 40/60 (66%)
Frame = -2
Query: 185 HPTLHLSHPTPDSLIWNTLIRAHSQSLTRPTASPLSIYLRMRFHGVYPDFYTFPFLLQSF 6
+P H+ H +S +WN +IRA + P SP+S+YLRMR H V PDF+TFPFLL SF
Sbjct: 11 NPIFHIGHLKLESFLWNMIIRAKN-----PRHSPISVYLRMRRHCVSPDFHTFPFLLPSF 65
>ref|XP_007050855.1| Pentatricopeptide repeat superfamily protein [Theobroma cacao]
gi|508703116|gb|EOX95012.1| Pentatricopeptide repeat
superfamily protein [Theobroma cacao]
Length = 456
Score = 57.0 bits (136), Expect = 3e-06
Identities = 34/69 (49%), Positives = 41/69 (59%)
Frame = -2
Query: 209 TSKLISSAHPTLHLSHPTPDSLIWNTLIRAHSQSLTRPTASPLSIYLRMRFHGVYPDFYT 30
+S L+S AH L LS P I+N+LIRA S S T P S+Y MR V P+ YT
Sbjct: 39 SSGLLSHAHTLLFLSKPPAHVFIYNSLIRAFSHSKTPHL--PFSLYTHMRNASVMPNNYT 96
Query: 29 FPFLLQSFS 3
FPFLL+S S
Sbjct: 97 FPFLLKSLS 105
>ref|XP_003577636.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Brachypodium distachyon]
Length = 710
Score = 55.8 bits (133), Expect = 6e-06
Identities = 25/49 (51%), Positives = 32/49 (65%)
Frame = -2
Query: 161 PTPDSLIWNTLIRAHSQSLTRPTASPLSIYLRMRFHGVYPDFYTFPFLL 15
P D +WNTL+R H+ S P +S LS+Y RMR GV PD YT+P +L
Sbjct: 210 PHRDVYMWNTLLRVHAHSHAEPQSSALSLYKRMRAAGVAPDHYTYPIVL 258
>ref|NP_001170485.1| hypothetical protein [Zea mays] gi|238005588|gb|ACR33829.1| unknown
[Zea mays] gi|413920755|gb|AFW60687.1| hypothetical
protein ZEAMMB73_143396 [Zea mays]
Length = 569
Score = 55.5 bits (132), Expect = 8e-06
Identities = 25/49 (51%), Positives = 32/49 (65%)
Frame = -2
Query: 161 PTPDSLIWNTLIRAHSQSLTRPTASPLSIYLRMRFHGVYPDFYTFPFLL 15
P D+ +WNTL+RAHS S A L++Y RMR GV PD YT+P +L
Sbjct: 79 PVRDAYMWNTLLRAHSHSQLSHAADTLALYKRMRAAGVAPDHYTYPIVL 127