BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00021097
         (1105 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAJ40865.1| bHLH transcriptional factor [Coptis japonica]         233   1e-58
dbj|BAJ41095.1| transcriptional factor CjbHLH1 [Coptis japonica ...   127   6e-27

>dbj|BAJ40865.1| bHLH transcriptional factor [Coptis japonica]
          Length = 228

 Score =  233 bits (593), Expect = 1e-58
 Identities = 131/216 (60%), Positives = 148/216 (68%)
 Frame = +3

Query: 39  SDWADTICTSSNTAGAATPTAGLDARERHKLAERERRKSMRELFLSLHALLPHANTVRQE 218
           +DW +T+ +   ++GA      +DARERHKLAERERRKSMRELFLSLHALLPH NTVR+E
Sbjct: 7   NDW-ETVSSEGKSSGAP-----IDARERHKLAERERRKSMRELFLSLHALLPHGNTVRKE 60

Query: 219 QSAILDEIIKYIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 398
           QS+ILDEIIKYIP                                               
Sbjct: 61  QSSILDEIIKYIPLASARLKSLQNRKESTPLSTRPKLASPSIQVSDRKSSGSSNST---- 116

Query: 399 XXXGDCNIRVAPEPSSSVSIRVRGDRVNVSLTDTKSTSQSLLLSAVLDELEGHNLELVRS 578
               DC+IRVAPEPS+SV+IRVRGDRVNVSLTDTK T+Q+LLLSA+ DEL+ HNLELVRS
Sbjct: 117 ----DCDIRVAPEPSASVAIRVRGDRVNVSLTDTKGTAQTLLLSAIFDELDAHNLELVRS 172

Query: 579 THCRDGSKVLHHSESKICDGLERSPVLLKSRLQELA 686
           THCRDGSKVLHHSESKI DGLERSP LLK+RLQELA
Sbjct: 173 THCRDGSKVLHHSESKISDGLERSPGLLKTRLQELA 208


>dbj|BAJ41095.1| transcriptional factor CjbHLH1 [Coptis japonica var. dissecta]
          Length = 206

 Score =  127 bits (320), Expect = 6e-27
 Identities = 80/167 (47%), Positives = 97/167 (58%)
 Frame = +3

Query: 39  SDWADTICTSSNTAGAATPTAGLDARERHKLAERERRKSMRELFLSLHALLPHANTVRQE 218
           +DW +T+ +   ++GA      +DARERHKLAERERRKSMRELFLSLHALLPH NTVR+E
Sbjct: 32  NDW-ETVSSEGKSSGAP-----IDARERHKLAERERRKSMRELFLSLHALLPHGNTVRKE 85

Query: 219 QSAILDEIIKYIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 398
           QS+ILDEIIKYIP                                               
Sbjct: 86  QSSILDEIIKYIPLASARLKSLQNRKESTPLSTRPKLASPSIQVSDRKSSGSSNST---- 141

Query: 399 XXXGDCNIRVAPEPSSSVSIRVRGDRVNVSLTDTKSTSQSLLLSAVL 539
                C+IRVAPEPS+SV+IRVRGDRV VSLTDT+    + ++SA+L
Sbjct: 142 ----XCDIRVAPEPSASVAIRVRGDRVXVSLTDTR-VQLNFVVSAIL 183