BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00020380
         (629 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007022702.1| Pentatricopeptide repeat (PPR) superfamily p...   199   4e-49
ref|XP_003633738.1| PREDICTED: pentatricopeptide repeat-containi...   197   2e-48
ref|XP_006430611.1| hypothetical protein CICLE_v10011485mg [Citr...   196   4e-48
ref|XP_006482125.1| PREDICTED: pentatricopeptide repeat-containi...   195   8e-48
ref|XP_007022703.1| Pentatricopeptide repeat (PPR) superfamily p...   195   8e-48
ref|XP_007022700.1| Pentatricopeptide repeat superfamily protein...   195   8e-48
emb|CAN82481.1| hypothetical protein VITISV_012747 [Vitis vinifera]   193   3e-47
ref|XP_002305195.1| pentatricopeptide repeat-containing family p...   190   3e-46
ref|XP_002531188.1| pentatricopeptide repeat-containing protein,...   188   1e-45
ref|XP_004301459.1| PREDICTED: pentatricopeptide repeat-containi...   178   1e-42
ref|XP_004171986.1| PREDICTED: pentatricopeptide repeat-containi...   177   3e-42
ref|XP_004486552.1| PREDICTED: pentatricopeptide repeat-containi...   176   4e-42
ref|XP_004140361.1| PREDICTED: pentatricopeptide repeat-containi...   176   4e-42
ref|XP_006854132.1| hypothetical protein AMTR_s00048p00164960 [A...   174   2e-41
ref|XP_004968345.1| PREDICTED: pentatricopeptide repeat-containi...   170   4e-40
ref|XP_007214531.1| hypothetical protein PRUPE_ppa014874mg, part...   166   7e-39
ref|XP_006587955.1| PREDICTED: pentatricopeptide repeat-containi...   161   1e-37
ref|XP_007022701.1| Pentatricopeptide repeat superfamily protein...   159   8e-37
ref|XP_007022704.1| Pentatricopeptide repeat (PPR) superfamily p...   158   1e-36
ref|XP_007153088.1| hypothetical protein PHAVU_003G005900g [Phas...   158   1e-36

>ref|XP_007022702.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
           isoform 3 [Theobroma cacao] gi|508722330|gb|EOY14227.1|
           Pentatricopeptide repeat (PPR) superfamily protein,
           putative isoform 3 [Theobroma cacao]
          Length = 563

 Score =  199 bits (507), Expect = 4e-49
 Identities = 96/184 (52%), Positives = 135/184 (73%), Gaps = 1/184 (0%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           LI+GC+K G++K S+  CEEM++ G +PSCS +NE+V  L +I D + ANA+LT++LDKG
Sbjct: 379 LIEGCAKAGEMKASVRHCEEMIRRGLVPSCSTFNEMVRGLCEIGDSENANALLTLVLDKG 438

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
           F+PNE TYS+L+  YG+EG  Q++ KLYYEM+YK  SPGL  +TSLIR LC CGKL+EAE
Sbjct: 439 FLPNETTYSHLIAGYGKEGNIQQVFKLYYEMEYKSLSPGLPVFTSLIRCLCHCGKLEEAE 498

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNSEA-FTEMMER 541
           +YL++M+DRSV  +  IYE LI  H+EK +   A  +YNEM  + + P+    FT++ E 
Sbjct: 499 RYLRIMKDRSVVLSEDIYEALITGHFEKGDKTGAGIIYNEMVARGMKPHKWGNFTQISEA 558

Query: 542 IQSS 553
           ++ S
Sbjct: 559 VEGS 562



 Score = 85.9 bits (211), Expect = 9e-15
 Identities = 46/171 (26%), Positives = 85/171 (49%)
 Frame = +2

Query: 23  KTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKGFVPNEA 202
           K G L+ +  + EEMLK GF+ +   ++  +   S+   +  A  VL  + + G  P + 
Sbjct: 315 KLGNLELAWEVHEEMLKRGFIANSFLFSSFIRAYSESGRIHEAENVLREMENMGLKPYDE 374

Query: 203 TYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAEKYLKVM 382
           T++YL++   + GE +  ++   EM  +G  P   T+  ++R LC+ G  + A   L ++
Sbjct: 375 TFNYLIEGCAKAGEMKASVRHCEEMIRRGLVPSCSTFNEMVRGLCEIGDSENANALLTLV 434

Query: 383 EDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNSEAFTEMM 535
            D+   P    Y  LI  + ++ N+Q+   +Y EM  + L P    FT ++
Sbjct: 435 LDKGFLPNETTYSHLIAGYGKEGNIQQVFKLYYEMEYKSLSPGLPVFTSLI 485


>ref|XP_003633738.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like [Vitis vinifera]
          Length = 547

 Score =  197 bits (502), Expect = 2e-48
 Identities = 95/169 (56%), Positives = 132/169 (78%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           LI GCSK G+L+E L LCE M++ G +PSC A+N + GKL +   VKRA+ +LT+LLDKG
Sbjct: 372 LIAGCSKAGRLEEGLRLCERMMQRGLVPSCWAFNLMAGKLCESGVVKRADEMLTLLLDKG 431

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
           FVP+E TYS L+ +YG+ GE Q++LKLYYEM+Y+  SPGL+ + SLIRSLCQC KL++AE
Sbjct: 432 FVPDEITYSNLIASYGKLGEIQQVLKLYYEMEYRSLSPGLLAFESLIRSLCQCRKLEKAE 491

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPN 511
           KYL++M+DRS+A +  +YETLI+S++EK +  RA  ++NEM  + L P+
Sbjct: 492 KYLRIMKDRSIAISTCVYETLISSYFEKGDELRASQLHNEMVSRGLKPS 540



 Score = 59.3 bits (142), Expect = 9e-07
 Identities = 40/183 (21%), Positives = 83/183 (45%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           +I    K G L++ + + + +      P       ++ ++ +   V++   +L  LL K 
Sbjct: 232 MISALCKEGALQKFVDMLDRIHGKRCSPIVIVNTCMIFRMLEEGRVEQGMLILKRLLQKN 291

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
            + +  +YS +  A  + G      ++Y EM  +G+ P    YT  I S C  G+++EA 
Sbjct: 292 MILDTISYSLIAYAKVKYGTLDSAWEVYEEMLNRGFHPNAFVYTLFIGSHCVEGRIEEAN 351

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNSEAFTEMMERI 544
           + ++ ME+  + P    +  LI    +   ++  L +   M ++ L+P+  AF  M  ++
Sbjct: 352 ELMQDMENAGLMPYDETFNLLIAGCSKAGRLEEGLRLCERMMQRGLVPSCWAFNLMAGKL 411

Query: 545 QSS 553
             S
Sbjct: 412 CES 414


>ref|XP_006430611.1| hypothetical protein CICLE_v10011485mg [Citrus clementina]
           gi|557532668|gb|ESR43851.1| hypothetical protein
           CICLE_v10011485mg [Citrus clementina]
          Length = 521

 Score =  196 bits (499), Expect = 4e-48
 Identities = 93/170 (54%), Positives = 126/170 (74%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           LI+GC+K  +++ESLS CE+M+    LPSCSA+NE++ +L +  +VK+AN +LT+ LDKG
Sbjct: 341 LIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNVKQANGMLTLALDKG 400

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
           F PNE TYS+L+  Y +EGE QE+LKLYYEM+YK  SP L  YTSLI SLCQCGKL+EA+
Sbjct: 401 FSPNEMTYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEAD 460

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNS 514
           KY K+M+  S+ P   IYE+L+  H EK N  +ALH+  EM  + L P++
Sbjct: 461 KYFKIMKSHSLVPGVDIYESLVGIHLEKGNKVKALHLCEEMVSEGLKPST 510



 Score = 88.2 bits (217), Expect = 2e-15
 Identities = 46/186 (24%), Positives = 88/186 (47%)
 Frame = +2

Query: 23  KTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKGFVPNEA 202
           K   L+ +L + EEMLK GF  +   Y   +G   +   ++ AN ++  + + G  P + 
Sbjct: 277 KMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDE 336

Query: 203 TYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAEKYLKVM 382
           T++ L++   +    +E L    +M  +   P    +  +IR LC+CG +K+A   L + 
Sbjct: 337 TFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNVKQANGMLTLA 396

Query: 383 EDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNSEAFTEMMERIQSSYST 562
            D+  +P    Y  LI  + ++  +Q  L +Y EM  + + P   A+T ++  +      
Sbjct: 397 LDKGFSPNEMTYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKL 456

Query: 563 VEGNKF 580
            E +K+
Sbjct: 457 EEADKY 462



 Score = 65.5 bits (158), Expect = 1e-08
 Identities = 34/135 (25%), Positives = 69/135 (51%)
 Frame = +2

Query: 140 VKRANAVLTVLLDKGFVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTS 319
           ++    +L  +L K  + +   YS ++ A  +    +  L +Y EM  +G+S     YT+
Sbjct: 246 IEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTT 305

Query: 320 LIRSLCQCGKLKEAEKYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQE 499
            I + C+ GK++EA   ++ ME+  + P    +  LI    + + ++ +L    +M  ++
Sbjct: 306 FIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRK 365

Query: 500 LIPNSEAFTEMMERI 544
           L+P+  AF EM+ R+
Sbjct: 366 LLPSCSAFNEMIRRL 380


>ref|XP_006482125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like isoform X1 [Citrus sinensis]
          Length = 553

 Score =  195 bits (496), Expect = 8e-48
 Identities = 92/170 (54%), Positives = 125/170 (73%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           LI+GC+K  +++ESLS CE+M+    LPSCSA+NE++ +L +  + K+AN +LT+ LDKG
Sbjct: 373 LIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKG 432

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
           F PNE TYS+L+  Y +EGE QE+LKLYYEM+YK  SP L  YTSLI SLCQCGKL+EA+
Sbjct: 433 FSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEAD 492

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNS 514
           KY K+M+  S+ P   IYE+L+  H EK N  +ALH+  EM  + L P++
Sbjct: 493 KYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPST 542



 Score = 90.5 bits (223), Expect = 4e-16
 Identities = 47/186 (25%), Positives = 88/186 (47%)
 Frame = +2

Query: 23  KTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKGFVPNEA 202
           K G L+ +L + EEMLK GF  +   Y   +G   +   ++ AN ++  + + G  P + 
Sbjct: 309 KMGNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDE 368

Query: 203 TYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAEKYLKVM 382
           T++ L++   +    +E L    +M  +   P    +  +IR LC+CG  K+A   L + 
Sbjct: 369 TFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLA 428

Query: 383 EDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNSEAFTEMMERIQSSYST 562
            D+  +P    Y  LI  + ++  +Q  L +Y EM  + + P   A+T ++  +      
Sbjct: 429 LDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKL 488

Query: 563 VEGNKF 580
            E +K+
Sbjct: 489 EEADKY 494



 Score = 72.4 bits (176), Expect = 1e-10
 Identities = 41/180 (22%), Positives = 87/180 (48%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           LI    K G+L+  + + + +      P       ++ ++   + ++    +L  +L K 
Sbjct: 233 LISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKN 292

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
            + +   YS ++ A  + G  +  L +Y EM  +G+S     YT+ I + C+ GK++EA 
Sbjct: 293 MIHDTIAYSLIVYAKVKMGNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEAN 352

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNSEAFTEMMERI 544
             ++ ME+  + P    +  LI    + + ++ +L    +M  ++L+P+  AF EM+ R+
Sbjct: 353 CLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRL 412


>ref|XP_007022703.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
           isoform 4 [Theobroma cacao] gi|508722331|gb|EOY14228.1|
           Pentatricopeptide repeat (PPR) superfamily protein,
           putative isoform 4 [Theobroma cacao]
          Length = 569

 Score =  195 bits (496), Expect = 8e-48
 Identities = 92/169 (54%), Positives = 127/169 (75%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           LI+GC+K G++K S+  CEEM++ G +PSCS +NE+V  L +I D + ANA+LT++LDKG
Sbjct: 379 LIEGCAKAGEMKASVRHCEEMIRRGLVPSCSTFNEMVRGLCEIGDSENANALLTLVLDKG 438

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
           F+PNE TYS+L+  YG+EG  Q++ KLYYEM+YK  SPGL  +TSLIR LC CGKL+EAE
Sbjct: 439 FLPNETTYSHLIAGYGKEGNIQQVFKLYYEMEYKSLSPGLPVFTSLIRCLCHCGKLEEAE 498

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPN 511
           +YL++M+DRSV  +  IYE LI  H+EK +   A  +YNEM  + + P+
Sbjct: 499 RYLRIMKDRSVVLSEDIYEALITGHFEKGDKTGAGIIYNEMVARGMKPH 547



 Score = 85.9 bits (211), Expect = 9e-15
 Identities = 46/171 (26%), Positives = 85/171 (49%)
 Frame = +2

Query: 23  KTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKGFVPNEA 202
           K G L+ +  + EEMLK GF+ +   ++  +   S+   +  A  VL  + + G  P + 
Sbjct: 315 KLGNLELAWEVHEEMLKRGFIANSFLFSSFIRAYSESGRIHEAENVLREMENMGLKPYDE 374

Query: 203 TYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAEKYLKVM 382
           T++YL++   + GE +  ++   EM  +G  P   T+  ++R LC+ G  + A   L ++
Sbjct: 375 TFNYLIEGCAKAGEMKASVRHCEEMIRRGLVPSCSTFNEMVRGLCEIGDSENANALLTLV 434

Query: 383 EDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNSEAFTEMM 535
            D+   P    Y  LI  + ++ N+Q+   +Y EM  + L P    FT ++
Sbjct: 435 LDKGFLPNETTYSHLIAGYGKEGNIQQVFKLYYEMEYKSLSPGLPVFTSLI 485


>ref|XP_007022700.1| Pentatricopeptide repeat superfamily protein, putative isoform 1
           [Theobroma cacao] gi|508722328|gb|EOY14225.1|
           Pentatricopeptide repeat superfamily protein, putative
           isoform 1 [Theobroma cacao]
          Length = 596

 Score =  195 bits (496), Expect = 8e-48
 Identities = 92/169 (54%), Positives = 127/169 (75%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           LI+GC+K G++K S+  CEEM++ G +PSCS +NE+V  L +I D + ANA+LT++LDKG
Sbjct: 379 LIEGCAKAGEMKASVRHCEEMIRRGLVPSCSTFNEMVRGLCEIGDSENANALLTLVLDKG 438

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
           F+PNE TYS+L+  YG+EG  Q++ KLYYEM+YK  SPGL  +TSLIR LC CGKL+EAE
Sbjct: 439 FLPNETTYSHLIAGYGKEGNIQQVFKLYYEMEYKSLSPGLPVFTSLIRCLCHCGKLEEAE 498

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPN 511
           +YL++M+DRSV  +  IYE LI  H+EK +   A  +YNEM  + + P+
Sbjct: 499 RYLRIMKDRSVVLSEDIYEALITGHFEKGDKTGAGIIYNEMVARGMKPH 547



 Score = 85.9 bits (211), Expect = 9e-15
 Identities = 46/171 (26%), Positives = 85/171 (49%)
 Frame = +2

Query: 23  KTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKGFVPNEA 202
           K G L+ +  + EEMLK GF+ +   ++  +   S+   +  A  VL  + + G  P + 
Sbjct: 315 KLGNLELAWEVHEEMLKRGFIANSFLFSSFIRAYSESGRIHEAENVLREMENMGLKPYDE 374

Query: 203 TYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAEKYLKVM 382
           T++YL++   + GE +  ++   EM  +G  P   T+  ++R LC+ G  + A   L ++
Sbjct: 375 TFNYLIEGCAKAGEMKASVRHCEEMIRRGLVPSCSTFNEMVRGLCEIGDSENANALLTLV 434

Query: 383 EDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNSEAFTEMM 535
            D+   P    Y  LI  + ++ N+Q+   +Y EM  + L P    FT ++
Sbjct: 435 LDKGFLPNETTYSHLIAGYGKEGNIQQVFKLYYEMEYKSLSPGLPVFTSLI 485


>emb|CAN82481.1| hypothetical protein VITISV_012747 [Vitis vinifera]
          Length = 642

 Score =  193 bits (491), Expect = 3e-47
 Identities = 91/161 (56%), Positives = 127/161 (78%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           LI GCSK G+L+E L LCE M++ G +PSC A+N + GKL +   VKRA+ +LT+LLDKG
Sbjct: 372 LIAGCSKAGRLEEGLRLCERMMQRGLVPSCWAFNLMAGKLCESGVVKRADEMLTLLLDKG 431

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
           FVP+E TYS L+ +YG+ GE Q++LKLYYEM+Y+  SPGL+ + S+IRSLCQC KL++AE
Sbjct: 432 FVPDEITYSNLIASYGKLGEIQQVLKLYYEMEYRSLSPGLLVFESIIRSLCQCRKLEKAE 491

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEM 487
           KYL++M+DRS+A +  +YETLI+ ++EK +  RA  ++NEM
Sbjct: 492 KYLRIMKDRSIAISTCVYETLISGYFEKGDELRASQLHNEM 532



 Score = 59.3 bits (142), Expect = 9e-07
 Identities = 40/183 (21%), Positives = 83/183 (45%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           +I    K G L++ + + + +      P       ++ ++ +   V++   +L  LL K 
Sbjct: 232 MISALCKEGALQKFVDMLDRIHGKRCSPIVIVNTCMIFRMLEEGRVEQGMLILKRLLQKN 291

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
            + +  +YS +  A  + G      ++Y EM  +G+ P    YT  I S C  G+++EA 
Sbjct: 292 MILDTISYSLIAYAKVKYGTLDSAWEVYEEMLNRGFHPNAFVYTLFIGSHCVEGRIEEAN 351

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNSEAFTEMMERI 544
           + ++ ME+  + P    +  LI    +   ++  L +   M ++ L+P+  AF  M  ++
Sbjct: 352 ELMQDMENAGLMPYDETFNLLIAGCSKAGRLEEGLRLCERMMQRGLVPSCWAFNLMAGKL 411

Query: 545 QSS 553
             S
Sbjct: 412 CES 414


>ref|XP_002305195.1| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|222848159|gb|EEE85706.1|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 556

 Score =  190 bits (482), Expect = 3e-46
 Identities = 88/161 (54%), Positives = 126/161 (78%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           L++GC+K G+++E+LS C++M++ G +PS SA+NE+VGKL  I+DV RAN +LT LLD+G
Sbjct: 379 LLEGCAKAGRVEETLSYCKKMMEMGHVPSLSAFNEMVGKLCRIEDVTRANEMLTNLLDEG 438

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
           F+ +E TYS L+  Y +  + QE+LKLYYEM+Y+  SPGLM +TSLI+ LC CGKL+EAE
Sbjct: 439 FLADEITYSNLISGYAKNNQIQEMLKLYYEMEYRSLSPGLMGFTSLIKGLCNCGKLEEAE 498

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEM 487
           KYL++M  RS+ P   +YE LI  ++EK + +RAL++YNEM
Sbjct: 499 KYLRIMIGRSLNPREDVYEALIKVYFEKGDKRRALNLYNEM 539



 Score = 60.1 bits (144), Expect = 5e-07
 Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 35/219 (15%)
 Frame = +2

Query: 29  GKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKGFVPNEATY 208
           G+++  L+L + ML+   +    AY+ IV     + ++  A  V   +L +GF  N   Y
Sbjct: 282 GRVEPGLALLKMMLRKNMILDTVAYSLIVYAKVKLGNLNSAMQVYEEMLKRGFNANSFVY 341

Query: 209 SYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAEKYLKVMED 388
           +  + AY +E   +E  +L  EM+  G  P   T+  L+    + G+++E   Y K M +
Sbjct: 342 TSFIGAYCKEERIEEANQLLQEMENMGLKPYGDTFNFLLEGCAKAGRVEETLSYCKKMME 401

Query: 389 RSVAPT-----------------------------------PYIYETLINSHYEKRNMQR 463
               P+                                      Y  LI+ + +   +Q 
Sbjct: 402 MGHVPSLSAFNEMVGKLCRIEDVTRANEMLTNLLDEGFLADEITYSNLISGYAKNNQIQE 461

Query: 464 ALHMYNEMNKQELIPNSEAFTEMMERIQSSYSTVEGNKF 580
            L +Y EM  + L P    FT +++ + +     E  K+
Sbjct: 462 MLKLYYEMEYRSLSPGLMGFTSLIKGLCNCGKLEEAEKY 500


>ref|XP_002531188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529229|gb|EEF31203.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 619

 Score =  188 bits (478), Expect = 1e-45
 Identities = 88/168 (52%), Positives = 123/168 (73%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           LI+GC+K G+++E LS  E+M++ G +PS  A+N+++ KL +  +V +AN  LT LLDKG
Sbjct: 380 LIEGCAKAGRVEECLSYFEKMIERGLVPSLLAFNKMIAKLCETGEVNQANTFLTRLLDKG 439

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
           F P+E TYSYLM  Y R+ + QE+LKLYYEM+Y+  SPGL+ +T LIRSLC CGKL++AE
Sbjct: 440 FSPDETTYSYLMTGYERDNQIQEVLKLYYEMEYRPLSPGLLVFTPLIRSLCHCGKLEQAE 499

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIP 508
           KYL++M+ RS+ P+  +YE LI  H EK +  RAL +YNEM  +   P
Sbjct: 500 KYLRIMKGRSLNPSQQVYEALIAGHLEKSDTARALQLYNEMISKGFTP 547



 Score = 84.0 bits (206), Expect = 3e-14
 Identities = 42/174 (24%), Positives = 85/174 (48%)
 Frame = +2

Query: 23  KTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKGFVPNEA 202
           + G L  +L + E MLK GF  +   +  ++G   +   +++AN +   +   G  P + 
Sbjct: 316 RLGNLDSALEVYEAMLKRGFNANSFVHTVLIGAYCNGGKIEKANQLFGEMGTMGLEPYDE 375

Query: 203 TYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAEKYLKVM 382
           T+++L++   + G  +E L  + +M  +G  P L+ +  +I  LC+ G++ +A  +L  +
Sbjct: 376 TFNFLIEGCAKAGRVEECLSYFEKMIERGLVPSLLAFNKMIAKLCETGEVNQANTFLTRL 435

Query: 383 EDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNSEAFTEMMERI 544
            D+  +P    Y  L+  +     +Q  L +Y EM  + L P    FT ++  +
Sbjct: 436 LDKGFSPDETTYSYLMTGYERDNQIQEVLKLYYEMEYRPLSPGLLVFTPLIRSL 489


>ref|XP_004301459.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 530

 Score =  178 bits (452), Expect = 1e-42
 Identities = 79/154 (51%), Positives = 120/154 (77%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           LI+GC+K G+++ES++  ++M++  F+PS  A+NE+VGKL +I D  +AN +LT+LLDKG
Sbjct: 365 LIEGCAKAGRVEESVNYMKQMMEIRFIPSLGAFNEMVGKLCEIGDADQANVMLTILLDKG 424

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
           F PNE TYS L+D Y R+G+  E+LKL+YEM+ +  SPG++ +TSLI+S CQCGK +EA+
Sbjct: 425 FSPNEITYSLLIDGYARKGKSDEVLKLFYEMESRSLSPGMLVFTSLIKSFCQCGKSEEAK 484

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRA 466
           KY ++M+DRS+AP+   YE  + +H+E+ N +RA
Sbjct: 485 KYFRIMKDRSIAPSISTYEIFLANHFEQGNTERA 518



 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 45/219 (20%), Positives = 85/219 (38%), Gaps = 35/219 (15%)
 Frame = +2

Query: 29  GKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKGFVPNEATY 208
           G+++E + L + ML+   +    AY+ IV     ++D+  A  V   +L +GF  N   Y
Sbjct: 268 GRVEEGMVLLKRMLQKNMVLDTIAYSLIVYAKVKLEDLGSAQQVYEEMLKRGFRANSFVY 327

Query: 209 SYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAEKYLK---- 376
           +  ++A+ + G   E   +  EM      P   +Y  LI    + G+++E+  Y+K    
Sbjct: 328 TLFIEAHCKAGRIDEAQSMMNEMGNMDLKPYDESYNFLIEGCAKAGRVEESVNYMKQMME 387

Query: 377 -------------------------------VMEDRSVAPTPYIYETLINSHYEKRNMQR 463
                                          ++ D+  +P    Y  LI+ +  K     
Sbjct: 388 IRFIPSLGAFNEMVGKLCEIGDADQANVMLTILLDKGFSPNEITYSLLIDGYARKGKSDE 447

Query: 464 ALHMYNEMNKQELIPNSEAFTEMMERIQSSYSTVEGNKF 580
            L ++ EM  + L P    FT +++       + E  K+
Sbjct: 448 VLKLFYEMESRSLSPGMLVFTSLIKSFCQCGKSEEAKKY 486


>ref|XP_004171986.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like [Cucumis sativus]
          Length = 539

 Score =  177 bits (448), Expect = 3e-42
 Identities = 85/161 (52%), Positives = 120/161 (74%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           LI+GC+ +G  +E LS+CE+ML+ GFLPSCS +N  + K+ +  DVK+ANA+LT+LLDKG
Sbjct: 375 LIEGCAISGHSEEILSMCEKMLERGFLPSCSVFNVAIAKICEKGDVKKANALLTILLDKG 434

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
           F+P+E TY+ L+  Y + GE QE+LKLYYEM  +  SPG+  + +LI SLCQ G+L+EAE
Sbjct: 435 FLPDETTYTNLIIGYRKSGEIQEILKLYYEMGARLLSPGVSVFFALIGSLCQSGRLEEAE 494

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEM 487
           KYLK+++D S+ P   IY+ LI  + +K N  +AL +YNEM
Sbjct: 495 KYLKIVKDSSLTPCLSIYQALILFYLKKGNRAKALELYNEM 535



 Score = 72.8 bits (177), Expect = 8e-11
 Identities = 44/186 (23%), Positives = 83/186 (44%)
 Frame = +2

Query: 23  KTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKGFVPNEA 202
           KTG +  +  + EEM + GF  +   Y   +G       V+ A+ ++  + + G  P   
Sbjct: 311 KTGSITSTWEVFEEMSERGFQANSFIYTLFIGVHCRGGKVEEAHCLMQEMENMGLKPYPE 370

Query: 203 TYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAEKYLKVM 382
           T++ L++     G  +E+L +  +M  +G+ P    +   I  +C+ G +K+A   L ++
Sbjct: 371 TFNLLIEGCAISGHSEEILSMCEKMLERGFLPSCSVFNVAIAKICEKGDVKKANALLTIL 430

Query: 383 EDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNSEAFTEMMERIQSSYST 562
            D+   P    Y  LI  + +   +Q  L +Y EM  + L P    F  ++  +  S   
Sbjct: 431 LDKGFLPDETTYTNLIIGYRKSGEIQEILKLYYEMGARLLSPGVSVFFALIGSLCQSGRL 490

Query: 563 VEGNKF 580
            E  K+
Sbjct: 491 EEAEKY 496



 Score = 56.6 bits (135), Expect = 6e-06
 Identities = 39/180 (21%), Positives = 79/180 (43%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           +I    K GKL+E+  +   +       S      ++ ++ +   V+    +L  +L K 
Sbjct: 235 MINSLCKEGKLQETSDMLNRIHGSRCSASLIVNACLIYRILEEGRVEDGITLLKRMLQKN 294

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
            V ++  YS ++ A  + G      +++ EM  +G+      YT  I   C+ GK++EA 
Sbjct: 295 MVLDDIAYSLIVYAKVKTGSITSTWEVFEEMSERGFQANSFIYTLFIGVHCRGGKVEEAH 354

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNSEAFTEMMERI 544
             ++ ME+  + P P  +  LI       + +  L M  +M ++  +P+   F   + +I
Sbjct: 355 CLMQEMENMGLKPYPETFNLLIEGCAISGHSEEILSMCEKMLERGFLPSCSVFNVAIAKI 414


>ref|XP_004486552.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like [Cicer arietinum]
           gi|502183720|ref|XP_004517198.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like [Cicer arietinum]
          Length = 551

 Score =  176 bits (447), Expect = 4e-42
 Identities = 85/165 (51%), Positives = 121/165 (73%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           +I GC+ +G+LK+  S  EEML  GF+PSCS+++++V KL +  DV++AN  LTVLLDKG
Sbjct: 383 VIVGCADSGRLKDCSSYFEEMLCAGFVPSCSSFDKMVAKLCENGDVEKANDFLTVLLDKG 442

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
           F+P++ TYS+L+  Y  + E QE+LK+YYEM+YK   PGL  Y+S+I+ LC+ GKL+++E
Sbjct: 443 FLPSDETYSHLIYGYAIKDEVQEVLKIYYEMEYKSMCPGLSVYSSMIKCLCRFGKLEDSE 502

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQE 499
           KYL++M+ RS+ P   IYETLI  H +K N  RAL + NEM   E
Sbjct: 503 KYLRIMKGRSLVPNVNIYETLIACHVQKGNNDRALQLRNEMASLE 547


>ref|XP_004140361.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like [Cucumis sativus]
          Length = 517

 Score =  176 bits (447), Expect = 4e-42
 Identities = 85/161 (52%), Positives = 120/161 (74%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           LI+GC+ +G  +E LS+CE+ML+ GFLPSCS +N  + K+ +  DVK+ANA+LT+LLDKG
Sbjct: 353 LIEGCAISGHSEEILSMCEKMLERGFLPSCSVFNVAIDKICEKGDVKKANALLTILLDKG 412

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
           F+P+E TY+ L+  Y + GE QE+LKLYYEM  +  SPG+  + +LI SLCQ G+L+EAE
Sbjct: 413 FLPDETTYTNLIIGYRKSGEIQEILKLYYEMGARLLSPGVSVFFALIGSLCQSGRLEEAE 472

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEM 487
           KYLK+++D S+ P   IY+ LI  + +K N  +AL +YNEM
Sbjct: 473 KYLKIVKDSSLTPCLSIYQALILLYLKKGNRAKALELYNEM 513



 Score = 72.4 bits (176), Expect = 1e-10
 Identities = 44/186 (23%), Positives = 83/186 (44%)
 Frame = +2

Query: 23  KTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKGFVPNEA 202
           KTG +  +  + EEM + GF  +   Y   +G       V+ A+ ++  + + G  P   
Sbjct: 289 KTGSITSTWEVFEEMSERGFQANSFIYTLFIGVHCRGGKVEEAHCLMQEMENMGLKPYPE 348

Query: 203 TYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAEKYLKVM 382
           T++ L++     G  +E+L +  +M  +G+ P    +   I  +C+ G +K+A   L ++
Sbjct: 349 TFNLLIEGCAISGHSEEILSMCEKMLERGFLPSCSVFNVAIDKICEKGDVKKANALLTIL 408

Query: 383 EDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNSEAFTEMMERIQSSYST 562
            D+   P    Y  LI  + +   +Q  L +Y EM  + L P    F  ++  +  S   
Sbjct: 409 LDKGFLPDETTYTNLIIGYRKSGEIQEILKLYYEMGARLLSPGVSVFFALIGSLCQSGRL 468

Query: 563 VEGNKF 580
            E  K+
Sbjct: 469 EEAEKY 474



 Score = 57.8 bits (138), Expect = 3e-06
 Identities = 39/180 (21%), Positives = 80/180 (44%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           +I    K GKL+E+  +   +       S      ++ ++ +   V+    +L  +L K 
Sbjct: 213 MINSLCKEGKLQETSDMLNRIHGSRCSASLIVNACLIYRILEEGRVEDGITLLKRMLQKN 272

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
            V ++  YS ++ A  + G      +++ EM  +G+      YT  I   C+ GK++EA 
Sbjct: 273 MVLDDIAYSLIVYAKVKTGSITSTWEVFEEMSERGFQANSFIYTLFIGVHCRGGKVEEAH 332

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNSEAFTEMMERI 544
             ++ ME+  + P P  +  LI       + +  L M  +M ++  +P+   F   +++I
Sbjct: 333 CLMQEMENMGLKPYPETFNLLIEGCAISGHSEEILSMCEKMLERGFLPSCSVFNVAIDKI 392


>ref|XP_006854132.1| hypothetical protein AMTR_s00048p00164960 [Amborella trichopoda]
           gi|548857801|gb|ERN15599.1| hypothetical protein
           AMTR_s00048p00164960 [Amborella trichopoda]
          Length = 562

 Score =  174 bits (441), Expect = 2e-41
 Identities = 90/179 (50%), Positives = 122/179 (68%), Gaps = 1/179 (0%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           LI+G  K GKL+ESL+  EEM++  +LPS   +NE+V +L  +  V +AN +LT LLD G
Sbjct: 363 LIEGLCKLGKLEESLNFYEEMIRMKYLPSVCTFNELVFELCKLGKVDKANGLLTDLLDMG 422

Query: 185 FVPNEATYSYLMDAYGREGE-FQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEA 361
           F P+E TY  L+D Y REG   QE LKLYYEM++KG SPG M Y+ LI  LC+ GK+KEA
Sbjct: 423 FSPDEITYCLLIDGYNREGRTIQEALKLYYEMEFKGPSPGHMAYSLLIGGLCRWGKVKEA 482

Query: 362 EKYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNSEAFTEMME 538
           EK+LKV  D+ ++PT  IY TLI  H E  N+++AL+ Y+EM +  L+P+S     + E
Sbjct: 483 EKFLKVYRDKLLSPTKSIYNTLIIGHCESGNIEKALYYYDEMIRDGLVPDSRTLRALAE 541



 Score = 77.0 bits (188), Expect = 4e-12
 Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 1/193 (0%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           +I G  + G L  +  + E+ LK GF  +       +G        +  N ++  ++ +G
Sbjct: 293 IINGFCEKGDLVRANEMHEDFLKKGFPSNSFTCTSFIGLYCKEGKFEEVNRLMKEMVSEG 352

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
             P + TY++L++   + G+ +E L  Y EM    Y P + T+  L+  LC+ GK+ +A 
Sbjct: 353 LKPYDMTYNFLIEGLCKLGKLEESLNFYEEMIRMKYLPSVCTFNELVFELCKLGKVDKAN 412

Query: 365 KYLKVMEDRSVAPTPYIYETLINSH-YEKRNMQRALHMYNEMNKQELIPNSEAFTEMMER 541
             L  + D   +P    Y  LI+ +  E R +Q AL +Y EM  +   P   A++ ++  
Sbjct: 413 GLLTDLLDMGFSPDEITYCLLIDGYNREGRTIQEALKLYYEMEFKGPSPGHMAYSLLIGG 472

Query: 542 IQSSYSTVEGNKF 580
           +       E  KF
Sbjct: 473 LCRWGKVKEAEKF 485



 Score = 67.0 bits (162), Expect = 4e-09
 Identities = 42/143 (29%), Positives = 69/143 (48%)
 Frame = +2

Query: 2   ALIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDK 181
           ALI    +  K  + +     M++   +    AY+ I+    +  D+ RAN +    L K
Sbjct: 257 ALIDNMFREKKWDQGIVFLRRMVQKNMILDKVAYSLIINGFCEKGDLVRANEMHEDFLKK 316

Query: 182 GFVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEA 361
           GF  N  T +  +  Y +EG+F+E+ +L  EM  +G  P  MTY  LI  LC+ GKL+E+
Sbjct: 317 GFPSNSFTCTSFIGLYCKEGKFEEVNRLMKEMVSEGLKPYDMTYNFLIEGLCKLGKLEES 376

Query: 362 EKYLKVMEDRSVAPTPYIYETLI 430
             + + M      P+   +  L+
Sbjct: 377 LNFYEEMIRMKYLPSVCTFNELV 399


>ref|XP_004968345.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like [Setaria italica]
          Length = 348

 Score =  170 bits (430), Expect = 4e-40
 Identities = 80/182 (43%), Positives = 129/182 (70%), Gaps = 2/182 (1%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           LI GC + G ++E L+  E ML  GF+P  S  N+++G LS+  +V++ N +LT L+DKG
Sbjct: 156 LIAGCFRQGMVEEGLAYFETMLHEGFVPDISNCNDMLGGLSNAGEVRKVNDLLTALMDKG 215

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
            VP+  TY  L+D YG+ G+ + ++K+Y+EM+++G  PG+  +T+LIR LCQCG LKEAE
Sbjct: 216 LVPDRDTYQRLIDGYGKAGDAEGIVKIYHEMEHRGLHPGVDVFTTLIRGLCQCGNLKEAE 275

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEM--NKQELIPNSEAFTEMME 538
           K+L VM+ ++VAPT  +Y+ LI+S+ EK N +RAL  Y+ M    ++L+P++++F  ++ 
Sbjct: 276 KFLVVMKKKAVAPTSDLYDLLISSYSEKGNTKRALWFYDMMIAENEKLVPSADSFMMLVR 335

Query: 539 RI 544
           R+
Sbjct: 336 RV 337



 Score = 73.9 bits (180), Expect = 4e-11
 Identities = 43/194 (22%), Positives = 92/194 (47%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           ++    + G LK +    ++M++ G   +   Y  ++      + V +A  +L  +L  G
Sbjct: 86  IVDAYCRIGDLKAAFEQRDDMVRRGCHLNAFVYTSLIRAHCCRRSVDKAVQLLQEMLSMG 145

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
             P +ATYS+L+    R+G  +E L  +  M ++G+ P +     ++  L   G++++  
Sbjct: 146 LKPYDATYSHLIAGCFRQGMVEEGLAYFETMLHEGFVPDISNCNDMLGGLSNAGEVRKVN 205

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNSEAFTEMMERI 544
             L  + D+ + P    Y+ LI+ + +  + +  + +Y+EM  + L P  + FT ++  +
Sbjct: 206 DLLTALMDKGLVPDRDTYQRLIDGYGKAGDAEGIVKIYHEMEHRGLHPGVDVFTTLIRGL 265

Query: 545 QSSYSTVEGNKFTV 586
               +  E  KF V
Sbjct: 266 CQCGNLKEAEKFLV 279



 Score = 56.6 bits (135), Expect = 6e-06
 Identities = 39/172 (22%), Positives = 80/172 (46%)
 Frame = +2

Query: 20  SKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKGFVPNE 199
           S+ GKL  + +L E +      PS  A+  +  ++ + + V++   +L  +L +  + ++
Sbjct: 21  SREGKLARTAALVERIHGKKCAPSIVAHVALTLRMIEEEKVEQVILLLKRMLQRNILLDD 80

Query: 200 ATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAEKYLKV 379
             YS ++DAY R G+ +   +   +M  +G       YTSLIR+ C    + +A + L+ 
Sbjct: 81  IAYSLIVDAYCRIGDLKAAFEQRDDMVRRGCHLNAFVYTSLIRAHCCRRSVDKAVQLLQE 140

Query: 380 MEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNSEAFTEMM 535
           M    + P    Y  LI   + +  ++  L  +  M  +  +P+     +M+
Sbjct: 141 MLSMGLKPYDATYSHLIAGCFRQGMVEEGLAYFETMLHEGFVPDISNCNDML 192


>ref|XP_007214531.1| hypothetical protein PRUPE_ppa014874mg, partial [Prunus persica]
           gi|462410396|gb|EMJ15730.1| hypothetical protein
           PRUPE_ppa014874mg, partial [Prunus persica]
          Length = 499

 Score =  166 bits (419), Expect = 7e-39
 Identities = 71/133 (53%), Positives = 107/133 (80%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           LI+GC+K G+++ SLS  ++M++ GF+P  SA+NE+VGKL +  D ++AN + T+LLDKG
Sbjct: 367 LIEGCAKAGRVEASLSYLKKMVESGFIPCRSAFNEMVGKLCETGDAEQANTMFTILLDKG 426

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
           F+P+  TY +L+D YGR+GE QE++KLYYEM+ +  SPG + +TS+I+S CQCGK++EAE
Sbjct: 427 FLPDSTTYGHLIDGYGRKGEIQEVVKLYYEMESRSLSPGALVFTSVIKSFCQCGKVEEAE 486

Query: 365 KYLKVMEDRSVAP 403
           +Y  +M+DRS+AP
Sbjct: 487 RYFGIMKDRSIAP 499



 Score = 63.5 bits (153), Expect = 5e-08
 Identities = 42/179 (23%), Positives = 81/179 (45%)
 Frame = +2

Query: 2   ALIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDK 181
           +L+    + G+++E L L   ML+   +    AY+ IV     + DV  A  V   +L +
Sbjct: 261 SLVFSILEGGRVEEGLMLLRRMLQKNMVLDTIAYSLIVYAKVKLGDVCSAWEVYEEMLKR 320

Query: 182 GFVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEA 361
           GF  N   Y+  M A+  EG  +E   +  EM+     P   +Y  LI    + G+++ +
Sbjct: 321 GFRANSFVYTLFMGAHCEEGRMEEAQGMMNEMENMDLKPFDESYNLLIEGCAKAGRVEAS 380

Query: 362 EKYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNSEAFTEMME 538
             YLK M +    P    +  ++    E  + ++A  M+  +  +  +P+S  +  +++
Sbjct: 381 LSYLKKMVESGFIPCRSAFNEMVGKLCETGDAEQANTMFTILLDKGFLPDSTTYGHLID 439


>ref|XP_006587955.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like isoform X2 [Glycine max]
           gi|571479752|ref|XP_006587956.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like isoform X3 [Glycine max]
           gi|571479754|ref|XP_003533688.2| PREDICTED:
           pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like isoform X1 [Glycine max]
          Length = 554

 Score =  161 bits (408), Expect = 1e-37
 Identities = 71/166 (42%), Positives = 118/166 (71%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           ++ GC+     ++ +S  EEM++ GF+P+C  +N++V +L +   V++AN +LTVLL+KG
Sbjct: 389 IVVGCAAAEDSEQCVSFFEEMVRVGFVPACMVFNKVVERLCEKGKVEKANGMLTVLLEKG 448

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
           F+PN+ TY++LM  Y R+ E QE+LKLYYEM+Y+  SPGL  + ++++  C+CGK+++AE
Sbjct: 449 FLPNDVTYAHLMQGYARKEEVQEVLKLYYEMEYRCVSPGLSVFGTIVQCFCRCGKVEDAE 508

Query: 365 KYLKVMEDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQEL 502
           KYL++M+ R V P   +Y+ LI+ + +K    RALH+ +EM   E+
Sbjct: 509 KYLRIMKGRLVRPDVSVYQALIDGYMKKGESARALHLRDEMASLEV 554



 Score = 64.3 bits (155), Expect = 3e-08
 Identities = 36/159 (22%), Positives = 72/159 (45%)
 Frame = +2

Query: 62  EMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKGFVPNEATYSYLMDAYGREG 241
           EM++ GF  +   Y   +G       V +A  +L  +  KG  P   T+ +++       
Sbjct: 338 EMVQRGFEGNAFVYTLFIGAFCREGRVGKAIGLLREMQGKGLRPYGETFEHIVVGCAAAE 397

Query: 242 EFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAEKYLKVMEDRSVAPTPYIYE 421
           + ++ +  + EM   G+ P  M +  ++  LC+ GK+++A   L V+ ++   P    Y 
Sbjct: 398 DSEQCVSFFEEMVRVGFVPACMVFNKVVERLCEKGKVEKANGMLTVLLEKGFLPNDVTYA 457

Query: 422 TLINSHYEKRNMQRALHMYNEMNKQELIPNSEAFTEMME 538
            L+  +  K  +Q  L +Y EM  + + P    F  +++
Sbjct: 458 HLMQGYARKEEVQEVLKLYYEMEYRCVSPGLSVFGTIVQ 496


>ref|XP_007022701.1| Pentatricopeptide repeat superfamily protein, putative isoform 2
           [Theobroma cacao] gi|508722329|gb|EOY14226.1|
           Pentatricopeptide repeat superfamily protein, putative
           isoform 2 [Theobroma cacao]
          Length = 549

 Score =  159 bits (401), Expect = 8e-37
 Identities = 72/124 (58%), Positives = 97/124 (78%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           LI+GC+K G++K S+  CEEM++ G +PSCS +NE+V  L +I D + ANA+LT++LDKG
Sbjct: 379 LIEGCAKAGEMKASVRHCEEMIRRGLVPSCSTFNEMVRGLCEIGDSENANALLTLVLDKG 438

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
           F+PNE TYS+L+  YG+EG  Q++ KLYYEM+YK  SPGL  +TSLIR LC CGKL+EAE
Sbjct: 439 FLPNETTYSHLIAGYGKEGNIQQVFKLYYEMEYKSLSPGLPVFTSLIRCLCHCGKLEEAE 498

Query: 365 KYLK 376
           +  K
Sbjct: 499 RVTK 502



 Score = 86.7 bits (213), Expect = 5e-15
 Identities = 49/189 (25%), Positives = 90/189 (47%)
 Frame = +2

Query: 23  KTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKGFVPNEA 202
           K G L+ +  + EEMLK GF+ +   ++  +   S+   +  A  VL  + + G  P + 
Sbjct: 315 KLGNLELAWEVHEEMLKRGFIANSFLFSSFIRAYSESGRIHEAENVLREMENMGLKPYDE 374

Query: 203 TYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAEKYLKVM 382
           T++YL++   + GE +  ++   EM  +G  P   T+  ++R LC+ G  + A   L ++
Sbjct: 375 TFNYLIEGCAKAGEMKASVRHCEEMIRRGLVPSCSTFNEMVRGLCEIGDSENANALLTLV 434

Query: 383 EDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNSEAFTEMMERIQSSYST 562
            D+   P    Y  LI  + ++ N+Q+   +Y EM  + L P    FT ++  +      
Sbjct: 435 LDKGFLPNETTYSHLIAGYGKEGNIQQVFKLYYEMEYKSLSPGLPVFTSLIRCLCHCGKL 494

Query: 563 VEGNKFTVQ 589
            E  + T Q
Sbjct: 495 EEAERVTKQ 503


>ref|XP_007022704.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
           isoform 5 [Theobroma cacao] gi|508722332|gb|EOY14229.1|
           Pentatricopeptide repeat (PPR) superfamily protein,
           putative isoform 5 [Theobroma cacao]
          Length = 504

 Score =  158 bits (400), Expect = 1e-36
 Identities = 71/124 (57%), Positives = 98/124 (79%)
 Frame = +2

Query: 5   LIKGCSKTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKG 184
           LI+GC+K G++K S+  CEEM++ G +PSCS +NE+V  L +I D + ANA+LT++LDKG
Sbjct: 379 LIEGCAKAGEMKASVRHCEEMIRRGLVPSCSTFNEMVRGLCEIGDSENANALLTLVLDKG 438

Query: 185 FVPNEATYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAE 364
           F+PNE TYS+L+  YG+EG  Q++ KLYYEM+YK  SPGL  +TSLIR LC CGKL+EAE
Sbjct: 439 FLPNETTYSHLIAGYGKEGNIQQVFKLYYEMEYKSLSPGLPVFTSLIRCLCHCGKLEEAE 498

Query: 365 KYLK 376
           + ++
Sbjct: 499 RVMQ 502



 Score = 85.9 bits (211), Expect = 9e-15
 Identities = 46/171 (26%), Positives = 85/171 (49%)
 Frame = +2

Query: 23  KTGKLKESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKGFVPNEA 202
           K G L+ +  + EEMLK GF+ +   ++  +   S+   +  A  VL  + + G  P + 
Sbjct: 315 KLGNLELAWEVHEEMLKRGFIANSFLFSSFIRAYSESGRIHEAENVLREMENMGLKPYDE 374

Query: 203 TYSYLMDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAEKYLKVM 382
           T++YL++   + GE +  ++   EM  +G  P   T+  ++R LC+ G  + A   L ++
Sbjct: 375 TFNYLIEGCAKAGEMKASVRHCEEMIRRGLVPSCSTFNEMVRGLCEIGDSENANALLTLV 434

Query: 383 EDRSVAPTPYIYETLINSHYEKRNMQRALHMYNEMNKQELIPNSEAFTEMM 535
            D+   P    Y  LI  + ++ N+Q+   +Y EM  + L P    FT ++
Sbjct: 435 LDKGFLPNETTYSHLIAGYGKEGNIQQVFKLYYEMEYKSLSPGLPVFTSLI 485


>ref|XP_007153088.1| hypothetical protein PHAVU_003G005900g [Phaseolus vulgaris]
           gi|561026442|gb|ESW25082.1| hypothetical protein
           PHAVU_003G005900g [Phaseolus vulgaris]
          Length = 532

 Score =  158 bits (399), Expect = 1e-36
 Identities = 73/155 (47%), Positives = 113/155 (72%)
 Frame = +2

Query: 38  KESLSLCEEMLKGGFLPSCSAYNEIVGKLSDIKDVKRANAVLTVLLDKGFVPNEATYSYL 217
           +ES+ + +EM++ GF+PSC  +N++V +L +  +V++AN +L+VL+DKGF+P++ TYS L
Sbjct: 378 EESVRVFDEMVRVGFVPSCVVFNKVVERLCEKGEVQKANGMLSVLMDKGFLPDDVTYSLL 437

Query: 218 MDAYGREGEFQELLKLYYEMDYKGYSPGLMTYTSLIRSLCQCGKLKEAEKYLKVMEDRSV 397
           M  Y  + E QE+LKLYYEM+YK  SPGL  + +++R LC CGK+++AE+YL+VM +R V
Sbjct: 438 MQGYAGKEEVQEVLKLYYEMEYKRMSPGLSVFVTVVRCLCHCGKVEDAERYLRVMRERLV 497

Query: 398 APTPYIYETLINSHYEKRNMQRALHMYNEMNKQEL 502
           A    +YE LI+ + +K N  RAL++  EM   EL
Sbjct: 498 AVDVSVYEELIDGYIKKGNTARALYLREEMASLEL 532