BLASTX nr result

ID: Cocculus23_contig00020303 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00020303
         (259 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN65039.1| hypothetical protein VITISV_009459 [Vitis vinifera]    60   4e-07
ref|XP_007045957.1| T-box transcription factor TBX5, putative is...    57   4e-06

>emb|CAN65039.1| hypothetical protein VITISV_009459 [Vitis vinifera]
          Length = 1250

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 31/73 (42%), Positives = 47/73 (64%)
 Frame = +2

Query: 32  VGFDSPNCIGENAPAVEHYENHHSTKYFEGSDREDVKSRKDINLNLTLPNESHEGTIVQR 211
           +GFD  NC   ++ AV  +    S KY +GS+  DVKS KD+NLN+ L N S    + ++
Sbjct: 639 IGFDYLNCTNGDS-AVSGHLIEGSAKYSKGSNCMDVKSAKDMNLNMVLSNSSSNDAVPRQ 697

Query: 212 DLQILNGERKNED 250
            L+I++GE+K+ED
Sbjct: 698 GLEIIDGEKKHED 710


>ref|XP_007045957.1| T-box transcription factor TBX5, putative isoform 1 [Theobroma
           cacao] gi|590699564|ref|XP_007045958.1| T-box
           transcription factor TBX5, putative isoform 1 [Theobroma
           cacao] gi|508709892|gb|EOY01789.1| T-box transcription
           factor TBX5, putative isoform 1 [Theobroma cacao]
           gi|508709893|gb|EOY01790.1| T-box transcription factor
           TBX5, putative isoform 1 [Theobroma cacao]
          Length = 1084

 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 30/77 (38%), Positives = 44/77 (57%)
 Frame = +2

Query: 20  RIPLVGFDSPNCIGENAPAVEHYENHHSTKYFEGSDREDVKSRKDINLNLTLPNESHEGT 199
           R P + ++  NC  ++  A E +  H STK +  S+  D+KS  D+NLN+ L N S    
Sbjct: 531 RFPSISYEYLNCSNDSKGASEQFPTHGSTKPYNCSNSVDMKSTNDVNLNVVLSNSSSNEP 590

Query: 200 IVQRDLQILNGERKNED 250
           + QR  QI +G RK+ED
Sbjct: 591 VSQRGPQI-DGGRKHED 606


Top