BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00020254
         (580 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   208   7e-52
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   201   9e-50
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   200   2e-49
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     200   2e-49
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        200   3e-49
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               200   3e-49
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                200   3e-49
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]         197   2e-48
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]           197   2e-48
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...   197   2e-48
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   194   1e-47
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     194   1e-47
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   194   1e-47
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   194   1e-47
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     187   1e-45
emb|CAN62092.1| hypothetical protein VITISV_022473 [Vitis vinifera]   186   5e-45
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...   184   2e-44
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        183   3e-44
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  181   1e-43
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              180   2e-43

>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  208 bits (530), Expect = 7e-52
 Identities = 99/195 (50%), Positives = 129/195 (66%), Gaps = 2/195 (1%)
 Frame = -2

Query: 579 DEWILDSGCSYHMCPKKNWFTTYQSIDGGKVLMGNDATCEVVGIGTVRIRMHDSIVRTLT 400
           DEWILDSGC+YHMCP ++WF  +Q +DGG V MGND  C+ VGIG++++R HD   R L 
Sbjct: 223 DEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDGSTRILR 282

Query: 399 DVRHVPKLRKNLISLGMLDSIGCVCKTQNGVMKISRGAMVLMKGLKKNGLYTLQXXXXXX 220
           DVR+VPKL+KNLISLG L+S G V   ++G++K + GA+V++KG+ KN LY  Q      
Sbjct: 283 DVRYVPKLKKNLISLGALESKGLVVTMRDGILKATSGALVMLKGVMKNNLYYYQGSTVVG 342

Query: 219 XXXXXXXXXXTD--TTRLWHLGSSHMSERGLTVLSKQGLLDGQKTGELDFCEHCVFRKQC 46
                      D   T+LWH+   H  E+ L + +KQGLL G K  +L+FCEHCV  KQ 
Sbjct: 343 TVAAATSSSKKDAEATKLWHMRLGHAGEKSLQIFTKQGLLKGTKACKLEFCEHCVLGKQR 402

Query: 45  RVKFSKAMHRTKGTL 1
           RVKF  A+H TKG L
Sbjct: 403 RVKFGTAIHNTKGIL 417


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  201 bits (512), Expect = 9e-50
 Identities = 94/194 (48%), Positives = 131/194 (67%), Gaps = 1/194 (0%)
 Frame = -2

Query: 579 DEWILDSGCSYHMCPKKNWFTTYQSIDGGKVLMGNDATCEVVGIGTVRIRMHDSIVRTLT 400
           DEW+LD+GC+YHMCP ++WFTTY+ + GG VLMG++  C+V G+GT++I+M D  +RTL+
Sbjct: 240 DEWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCIRTLS 299

Query: 399 DVRHVPKLRKNLISLGMLDSIGCVCKTQNGVMKISRGAMVLMKG-LKKNGLYTLQXXXXX 223
           DVRH+P L++NLISL  LD  G      +G++K+++G++V+MK  +K   LY LQ     
Sbjct: 300 DVRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIKNADLYHLQ--GTT 357

Query: 222 XXXXXXXXXXXTDTTRLWHLGSSHMSERGLTVLSKQGLLDGQKTGELDFCEHCVFRKQCR 43
                         + LWH+   HMSE GL  LSK+GLLDGQ  G+L FCEHC+F K  R
Sbjct: 358 IVGNVAAVTDSLSNSDLWHMRLGHMSEIGLAELSKRGLLDGQNIGKLKFCEHCIFGKHKR 417

Query: 42  VKFSKAMHRTKGTL 1
           VKF+ + H T+G L
Sbjct: 418 VKFTTSTHTTEGIL 431


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  200 bits (509), Expect = 2e-49
 Identities = 94/194 (48%), Positives = 128/194 (65%), Gaps = 1/194 (0%)
 Frame = -2

Query: 579 DEWILDSGCSYHMCPKKNWFTTYQSIDGGKVLMGNDATCEVVGIGTVRIRMHDSIVRTLT 400
           D W+LDSG SYH+CP++ WFTTY+ +DGG + M N + C+VVG G+++IR HD    TL 
Sbjct: 277 DVWVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLN 336

Query: 399 DVRHVPKLRKNLISLGMLDSIGCVCKTQNGVMKISRGAMVLMKGLKKNGLYTLQ-XXXXX 223
           +VRHVP + KNLISL +LDS G     ++GV+++ +G+ +++KG+ +  LY LQ      
Sbjct: 337 EVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTG 396

Query: 222 XXXXXXXXXXXTDTTRLWHLGSSHMSERGLTVLSKQGLLDGQKTGELDFCEHCVFRKQCR 43
                       D T+LWH+   HM ERG+ +LSK+ LL G K   L+FCEHCVF K  R
Sbjct: 397 SAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHR 456

Query: 42  VKFSKAMHRTKGTL 1
            KF KA+HRTKGTL
Sbjct: 457 NKFPKAIHRTKGTL 470


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  200 bits (509), Expect = 2e-49
 Identities = 96/195 (49%), Positives = 131/195 (67%), Gaps = 2/195 (1%)
 Frame = -2

Query: 579 DEWILDSGCSYHMCPKKNWFTTYQSIDGGKVLMGNDATCEVVGIGTVRIRMHDSIVRTLT 400
           D+WILD+ C+YHMCP ++WF TY+++ GG VLMG+D  CEV GIGTV+I+M D  +RTL 
Sbjct: 207 DQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLL 266

Query: 399 DVRHVPKLRKNLISLGMLDSIGCVCKTQNGVMKISRGAMVLMKG-LKKNGLYTLQ-XXXX 226
           DVRH+P L+++LISL  LD  G      +G++K+++G++V+MK  +K   LY L+     
Sbjct: 267 DVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTIL 326

Query: 225 XXXXXXXXXXXXTDTTRLWHLGSSHMSERGLTVLSKQGLLDGQKTGELDFCEHCVFRKQC 46
                       +D T LWH+   HMSE GL  LSK+GLLDGQ  G+L FCEHC+F K  
Sbjct: 327 GNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHK 386

Query: 45  RVKFSKAMHRTKGTL 1
           RVKF+ + H T+G L
Sbjct: 387 RVKFNTSTHTTEGIL 401


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  200 bits (508), Expect = 3e-49
 Identities = 96/195 (49%), Positives = 130/195 (66%), Gaps = 2/195 (1%)
 Frame = -2

Query: 579 DEWILDSGCSYHMCPKKNWFTTYQSIDGGKVLMGNDATCEVVGIGTVRIRMHDSIVRTLT 400
           D+WILD+ C+YHMCP ++WF TY+ + GG VLMG+D  CEV GIGTV+I+M D  +RTL+
Sbjct: 298 DQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLS 357

Query: 399 DVRHVPKLRKNLISLGMLDSIGCVCKTQNGVMKISRGAMVLMK-GLKKNGLYTLQ-XXXX 226
           DVRH+P L+++LISL  LD  G      +G++K+++G++V+MK  +K   LY LQ     
Sbjct: 358 DVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTIL 417

Query: 225 XXXXXXXXXXXXTDTTRLWHLGSSHMSERGLTVLSKQGLLDGQKTGELDFCEHCVFRKQC 46
                       +D T LWH+   HMSE GL  LSK+GLLDGQ   +L FCEHC+F K  
Sbjct: 418 GNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHK 477

Query: 45  RVKFSKAMHRTKGTL 1
           RVKF+ + H T+G L
Sbjct: 478 RVKFNTSTHTTEGIL 492


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  200 bits (508), Expect = 3e-49
 Identities = 96/195 (49%), Positives = 130/195 (66%), Gaps = 2/195 (1%)
 Frame = -2

Query: 579 DEWILDSGCSYHMCPKKNWFTTYQSIDGGKVLMGNDATCEVVGIGTVRIRMHDSIVRTLT 400
           D+WILD+ C+YHMCP ++WF TY+ + GG VLMG+D  CEV GIGTV+I+M D  +RTL+
Sbjct: 115 DQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLS 174

Query: 399 DVRHVPKLRKNLISLGMLDSIGCVCKTQNGVMKISRGAMVLMKG-LKKNGLYTLQ-XXXX 226
           DVRH+P L+++LISL  LD  G      +G++K+++G++V+MK  +K   LY LQ     
Sbjct: 175 DVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTIL 234

Query: 225 XXXXXXXXXXXXTDTTRLWHLGSSHMSERGLTVLSKQGLLDGQKTGELDFCEHCVFRKQC 46
                       +D T LWH+   HMSE GL  LS +GLLDGQ  G+L FCEHC+F K  
Sbjct: 235 GNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHK 294

Query: 45  RVKFSKAMHRTKGTL 1
           RVKF+ + H T+G L
Sbjct: 295 RVKFNTSTHTTEGIL 309


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  200 bits (508), Expect = 3e-49
 Identities = 96/195 (49%), Positives = 130/195 (66%), Gaps = 2/195 (1%)
 Frame = -2

Query: 579 DEWILDSGCSYHMCPKKNWFTTYQSIDGGKVLMGNDATCEVVGIGTVRIRMHDSIVRTLT 400
           D+WILD+ C+YHMCP ++WF TY+ + GG VLMG+D  CEV GIGTV+I+M D  +RTL+
Sbjct: 283 DQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLS 342

Query: 399 DVRHVPKLRKNLISLGMLDSIGCVCKTQNGVMKISRGAMVLMKG-LKKNGLYTLQ-XXXX 226
           DVRH+P L+++LISL  LD  G      +G++K+++G++V+MK  +K   LY LQ     
Sbjct: 343 DVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTIL 402

Query: 225 XXXXXXXXXXXXTDTTRLWHLGSSHMSERGLTVLSKQGLLDGQKTGELDFCEHCVFRKQC 46
                       +D T LWH+   HMSE GL  LS +GLLDGQ  G+L FCEHC+F K  
Sbjct: 403 GNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHK 462

Query: 45  RVKFSKAMHRTKGTL 1
           RVKF+ + H T+G L
Sbjct: 463 RVKFNTSTHTTEGIL 477


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score =  197 bits (501), Expect = 2e-48
 Identities = 94/195 (48%), Positives = 130/195 (66%), Gaps = 2/195 (1%)
 Frame = -2

Query: 579 DEWILDSGCSYHMCPKKNWFTTYQSIDGGKVLMGNDATCEVVGIGTVRIRMHDSIVRTLT 400
           D+WILD+ C+YHMCP ++WF TY+++ GG VLMG+D  CEV GIG V+I+M D  + TL+
Sbjct: 130 DQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLS 189

Query: 399 DVRHVPKLRKNLISLGMLDSIGCVCKTQNGVMKISRGAMVLMKG-LKKNGLYTLQ-XXXX 226
           DVRH+P L+++LISL  LD  G      +G++K+++G++V+MK  +K   LY L+     
Sbjct: 190 DVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTIL 249

Query: 225 XXXXXXXXXXXXTDTTRLWHLGSSHMSERGLTVLSKQGLLDGQKTGELDFCEHCVFRKQC 46
                       +D T LWH+   HMSE GL  LSK+GLLDGQ  G+L FCEHC+F K  
Sbjct: 250 GNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHK 309

Query: 45  RVKFSKAMHRTKGTL 1
           RVKF+ + H T+G L
Sbjct: 310 RVKFNTSTHTTEGIL 324


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score =  197 bits (501), Expect = 2e-48
 Identities = 94/195 (48%), Positives = 130/195 (66%), Gaps = 2/195 (1%)
 Frame = -2

Query: 579 DEWILDSGCSYHMCPKKNWFTTYQSIDGGKVLMGNDATCEVVGIGTVRIRMHDSIVRTLT 400
           D+WILD+ C+YHMCP ++WF TY+++ GG VLMG+D  CEV GIG V+I+M D  + TL+
Sbjct: 130 DQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLS 189

Query: 399 DVRHVPKLRKNLISLGMLDSIGCVCKTQNGVMKISRGAMVLMKG-LKKNGLYTLQ-XXXX 226
           DVRH+P L+++LISL  LD  G      +G++K+++G++V+MK  +K   LY L+     
Sbjct: 190 DVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTIL 249

Query: 225 XXXXXXXXXXXXTDTTRLWHLGSSHMSERGLTVLSKQGLLDGQKTGELDFCEHCVFRKQC 46
                       +D T LWH+   HMSE GL  LSK+GLLDGQ  G+L FCEHC+F K  
Sbjct: 250 GNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHK 309

Query: 45  RVKFSKAMHRTKGTL 1
           RVKF+ + H T+G L
Sbjct: 310 RVKFNTSTHTTEGIL 324


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
           gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
           Japonica Group]
          Length = 778

 Score =  197 bits (500), Expect = 2e-48
 Identities = 94/195 (48%), Positives = 130/195 (66%), Gaps = 2/195 (1%)
 Frame = -2

Query: 579 DEWILDSGCSYHMCPKKNWFTTYQSIDGGKVLMGNDATCEVVGIGTVRIRMHDSIVRTLT 400
           D+WILD+ C+YHMCP ++WF TY+++ GG VLMG+D  CEV GIGTV+I+M D  +RTL+
Sbjct: 264 DQWILDTACTYHMCPNRDWFATYETVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLS 323

Query: 399 DVRHVPKLRKNLISLGMLDSIGCVCKTQNGVMKISRGAMVLMKG-LKKNGLYTLQ-XXXX 226
           DVRH+P L+++LIS   LD  G      +G++K+++G++V+MK  +K   LY L+     
Sbjct: 324 DVRHIPNLKRSLISFCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTIL 383

Query: 225 XXXXXXXXXXXXTDTTRLWHLGSSHMSERGLTVLSKQGLLDGQKTGELDFCEHCVFRKQC 46
                       +D T LWH+   HMSE GL  LSK+GLL GQ  G+L FCEHC+F K  
Sbjct: 384 GNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLYGQSIGKLKFCEHCIFGKHK 443

Query: 45  RVKFSKAMHRTKGTL 1
           RVKF+ + H T+G L
Sbjct: 444 RVKFNTSTHTTEGIL 458


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  194 bits (493), Expect = 1e-47
 Identities = 93/195 (47%), Positives = 130/195 (66%), Gaps = 2/195 (1%)
 Frame = -2

Query: 579  DEWILDSGCSYHMCPKKNWFTTYQSIDGGKVLMGNDATCEVVGIGTVRIRMHDSIVRTLT 400
            D+WIL++ C YHMCP ++WF TY+++  G VLMG+D  CEV GIGTV+I+M D  +RTL+
Sbjct: 505  DQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLS 564

Query: 399  DVRHVPKLRKNLISLGMLDSIGCVCKTQNGVMKISRGAMVLMKG-LKKNGLYTLQ-XXXX 226
            DVRH+P L+++LISL  LD  G      +G++K+++G++V+MK  +K   LY L+     
Sbjct: 565  DVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTIL 624

Query: 225  XXXXXXXXXXXXTDTTRLWHLGSSHMSERGLTVLSKQGLLDGQKTGELDFCEHCVFRKQC 46
                        +D T LWH+   HM+E GL  LSK+GLLDGQ  G+L FCEHC+F K  
Sbjct: 625  GNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHK 684

Query: 45   RVKFSKAMHRTKGTL 1
            RVKF+ + H T+G L
Sbjct: 685  RVKFNTSTHTTEGIL 699


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  194 bits (493), Expect = 1e-47
 Identities = 94/195 (48%), Positives = 130/195 (66%), Gaps = 2/195 (1%)
 Frame = -2

Query: 579 DEWILDSGCSYHMCPKKNWFTTYQSIDGGKVLMGNDATCEVVGIGTVRIRMHDSIVRTLT 400
           D+WILD+  +YHMCP ++WF TY+++ GG VLMG+D  CEV GIGTV+I+M D  +RTL+
Sbjct: 333 DQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLS 392

Query: 399 DVRHVPKLRKNLISLGMLDSIGCVCKTQNGVMKISRGAMVLMKG-LKKNGLYTLQ-XXXX 226
           DVRH+P L+++LISL  LD  G      +G++K+++G++V+MK  +K   LY L+     
Sbjct: 393 DVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTIL 452

Query: 225 XXXXXXXXXXXXTDTTRLWHLGSSHMSERGLTVLSKQGLLDGQKTGELDFCEHCVFRKQC 46
                       +D T LWH+   HMSE GL  LSK+ LLDGQ  G+L FCEHC+F K  
Sbjct: 453 GNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHK 512

Query: 45  RVKFSKAMHRTKGTL 1
           RVKF+ + H T+G L
Sbjct: 513 RVKFNTSTHTTEGIL 527


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
           gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
           Japonica Group]
          Length = 1601

 Score =  194 bits (493), Expect = 1e-47
 Identities = 93/195 (47%), Positives = 130/195 (66%), Gaps = 2/195 (1%)
 Frame = -2

Query: 579 DEWILDSGCSYHMCPKKNWFTTYQSIDGGKVLMGNDATCEVVGIGTVRIRMHDSIVRTLT 400
           D+WIL++ C YHMCP ++WF TY+++  G VLMG+D  CEV GIGTV+I+M D  +RTL+
Sbjct: 298 DQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLS 357

Query: 399 DVRHVPKLRKNLISLGMLDSIGCVCKTQNGVMKISRGAMVLMKG-LKKNGLYTLQ-XXXX 226
           DVRH+P L+++LISL  LD  G      +G++K+++G++V+MK  +K   LY L+     
Sbjct: 358 DVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTIL 417

Query: 225 XXXXXXXXXXXXTDTTRLWHLGSSHMSERGLTVLSKQGLLDGQKTGELDFCEHCVFRKQC 46
                       +D T LWH+   HM+E GL  LSK+GLLDGQ  G+L FCEHC+F K  
Sbjct: 418 GNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHK 477

Query: 45  RVKFSKAMHRTKGTL 1
           RVKF+ + H T+G L
Sbjct: 478 RVKFNTSTHTTEGIL 492


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1312

 Score =  194 bits (493), Expect = 1e-47
 Identities = 94/195 (48%), Positives = 130/195 (66%), Gaps = 2/195 (1%)
 Frame = -2

Query: 579 DEWILDSGCSYHMCPKKNWFTTYQSIDGGKVLMGNDATCEVVGIGTVRIRMHDSIVRTLT 400
           D+WILD+  +YHMCP ++WF TY+++ GG VLMG+D  CEV GIGTV+I+M D  +RTL+
Sbjct: 333 DQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLS 392

Query: 399 DVRHVPKLRKNLISLGMLDSIGCVCKTQNGVMKISRGAMVLMKG-LKKNGLYTLQ-XXXX 226
           DVRH+P L+++LISL  LD  G      +G++K+++G++V+MK  +K   LY L+     
Sbjct: 393 DVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTIL 452

Query: 225 XXXXXXXXXXXXTDTTRLWHLGSSHMSERGLTVLSKQGLLDGQKTGELDFCEHCVFRKQC 46
                       +D T LWH+   HMSE GL  LSK+ LLDGQ  G+L FCEHC+F K  
Sbjct: 453 GNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHK 512

Query: 45  RVKFSKAMHRTKGTL 1
           RVKF+ + H T+G L
Sbjct: 513 RVKFNTSTHTTEGIL 527


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  187 bits (476), Expect = 1e-45
 Identities = 90/195 (46%), Positives = 128/195 (65%), Gaps = 2/195 (1%)
 Frame = -2

Query: 579 DEWILDSGCSYHMCPKKNWFTTYQSIDGGKVLMGNDATCEVVGIGTVRIRMHDSIVRTLT 400
           D+WILD+ C+YHMC  ++WF TY+++ GG VLMG+D  CEV G+ TV+I+M D  +RTL+
Sbjct: 298 DQWILDTACTYHMCLNRDWFATYEAVQGGTVLMGDDTPCEVAGVETVQIKMFDGCIRTLS 357

Query: 399 DVRHVPKLRKNLISLGMLDSIGCVCKTQNGVMKISRGAMVLMKG-LKKNGLYTLQ-XXXX 226
           DVRH+P L+++LISL  LD         +G++K+++G++V+MK  +K   LY ++     
Sbjct: 358 DVRHIPNLKRSLISLCTLDRKVYKYSGGDGILKVTKGSLVVMKADIKSANLYHVRGTTIL 417

Query: 225 XXXXXXXXXXXXTDTTRLWHLGSSHMSERGLTVLSKQGLLDGQKTGELDFCEHCVFRKQC 46
                       +D T LWH+   HMSE GL  LSK+GLLDGQ  G+L FCEHC+F K  
Sbjct: 418 GNIAAVSDSLYNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHK 477

Query: 45  RVKFSKAMHRTKGTL 1
           RVKF+ + H T+  L
Sbjct: 478 RVKFNTSTHTTESIL 492


>emb|CAN62092.1| hypothetical protein VITISV_022473 [Vitis vinifera]
          Length = 318

 Score =  186 bits (471), Expect = 5e-45
 Identities = 89/145 (61%), Positives = 107/145 (73%)
 Frame = -2

Query: 444 TVRIRMHDSIVRTLTDVRHVPKLRKNLISLGMLDSIGCVCKTQNGVMKISRGAMVLMKGL 265
           T++I+ HD I+ TL D+RHVPKL+K LISLG LDS GC  K   GV++I +GA+V+MKG 
Sbjct: 70  TIQIKTHDDIIMTLIDLRHVPKLKKKLISLGTLDSNGCTYKAGGGVLRILKGALVVMKGN 129

Query: 264 KKNGLYTLQXXXXXXXXXXXXXXXXTDTTRLWHLGSSHMSERGLTVLSKQGLLDGQKTGE 85
           K NGLYTLQ                 +TTRLWH+   HMS++GLT+LSK+GLLDGQKTGE
Sbjct: 130 KINGLYTLQGGTIIGAVVVSISESIIETTRLWHMRLGHMSDKGLTILSKRGLLDGQKTGE 189

Query: 84  LDFCEHCVFRKQCRVKFSKAMHRTK 10
           LDFCEHCVF KQCRVKFS  +HRTK
Sbjct: 190 LDFCEHCVFGKQCRVKFSAGVHRTK 214


>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1138

 Score =  184 bits (466), Expect = 2e-44
 Identities = 89/193 (46%), Positives = 119/193 (61%)
 Frame = -2

Query: 579 DEWILDSGCSYHMCPKKNWFTTYQSIDGGKVLMGNDATCEVVGIGTVRIRMHDSIVRTLT 400
           D+WILD+ C+YHMCP ++WF TY+++ GG VLMG+D  CEV GIG V+I+M D  +RTL+
Sbjct: 240 DQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCIRTLS 299

Query: 399 DVRHVPKLRKNLISLGMLDSIGCVCKTQNGVMKISRGAMVLMKGLKKNGLYTLQXXXXXX 220
           DVRH P L+++LISL  LD  G      +G++K+  G + ++     N            
Sbjct: 300 DVRHFPNLKRSLISLRTLDRKGYKYSGGDGILKLILGNVAVVSDSLSNS----------- 348

Query: 219 XXXXXXXXXXTDTTRLWHLGSSHMSERGLTVLSKQGLLDGQKTGELDFCEHCVFRKQCRV 40
                      D T LWH+   HMSE GL  LSK+GLL GQ  G+L FCEHC+F K  RV
Sbjct: 349 -----------DATNLWHMRLGHMSEIGLAELSKRGLLYGQSIGKLKFCEHCIFGKHKRV 397

Query: 39  KFSKAMHRTKGTL 1
           KF+ + H T+GTL
Sbjct: 398 KFNTSTHTTEGTL 410


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  183 bits (465), Expect = 3e-44
 Identities = 89/193 (46%), Positives = 128/193 (66%), Gaps = 1/193 (0%)
 Frame = -2

Query: 576 EWILDSGCSYHMCPKKNWFTTYQSIDGGKVLMGNDATCEVVGIGTV-RIRMHDSIVRTLT 400
           +W++DSGCS+H+CP+K  F  Y+++DGG+VLMGN+  C +VGI    R R    ++R+L 
Sbjct: 291 QWVIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCKRSRCLMELLRSLH 350

Query: 399 DVRHVPKLRKNLISLGMLDSIGCVCKTQNGVMKISRGAMVLMKGLKKNGLYTLQXXXXXX 220
           +VRH P+L++NLISLGMLDS+G   K++ G +++ +G  ++MKG+ +NGLY LQ      
Sbjct: 351 EVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVLQGSSVPV 410

Query: 219 XXXXXXXXXXTDTTRLWHLGSSHMSERGLTVLSKQGLLDGQKTGELDFCEHCVFRKQCRV 40
                      D T+LWHL   HMS +GL  LSKQGLL G +  +L+FCE+C+F K  R 
Sbjct: 411 QEGVSAVSEE-DRTKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCENCIFGKSHRS 469

Query: 39  KFSKAMHRTKGTL 1
           KF+K  H +K  L
Sbjct: 470 KFNKGEHMSKQVL 482


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  181 bits (459), Expect = 1e-43
 Identities = 88/194 (45%), Positives = 124/194 (63%), Gaps = 1/194 (0%)
 Frame = -2

Query: 579 DEWILDSGCSYHMCPKKNWFTTYQSIDGGKVLMGNDATCEVVGIGTVRIRMHDSIVRTLT 400
           D WI+DSG ++HM P+++WF TY+ +  G V MGND   E+VGIGTV+I+M+D  +RTL 
Sbjct: 289 DVWIVDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIRTLQ 348

Query: 399 DVRHVPKLRKNLISLGMLDSIGCVCKTQNGVMKISRGAMVLMKGLK-KNGLYTLQXXXXX 223
           +VRHV +L KNL+S+G LD +G     Q G++K+ +G++V+MK  K    LY L      
Sbjct: 349 EVRHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYMLLGDTWQ 408

Query: 222 XXXXXXXXXXXTDTTRLWHLGSSHMSERGLTVLSKQGLLDGQKTGELDFCEHCVFRKQCR 43
                       +TT +WH    HMSERGL VL+++ L+ G K+  L FCEHCV  KQ R
Sbjct: 409 MADASVAVGSQEETTMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISKQHR 468

Query: 42  VKFSKAMHRTKGTL 1
           +KF+K+  R+K  L
Sbjct: 469 LKFAKSTARSKHIL 482


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  180 bits (457), Expect = 2e-43
 Identities = 87/194 (44%), Positives = 121/194 (62%), Gaps = 1/194 (0%)
 Frame = -2

Query: 579 DEWILDSGCSYHMCPKKNWFTTYQSIDGGKVLMGNDATCEVVGIGTVRIRMHDSIVRTLT 400
           D WI+DSG ++HM P ++WF +Y+ I  G V MGND   E+ G+GT+R++MHD  VR + 
Sbjct: 289 DVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 399 DVRHVPKLRKNLISLGMLDSIGCVCKTQNGVMKISRGAMVLMKGLK-KNGLYTLQXXXXX 223
            VRHV  L+KNL+S+G LD +GC   T++G++K+ +G +V+MK  K  + LY L      
Sbjct: 349 GVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408

Query: 222 XXXXXXXXXXXTDTTRLWHLGSSHMSERGLTVLSKQGLLDGQKTGELDFCEHCVFRKQCR 43
                       +TT +WH    HMSERGL VL ++ LL G KT  L FCEHCV  KQ R
Sbjct: 409 EADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVMSKQHR 468

Query: 42  VKFSKAMHRTKGTL 1
           +KF++   R+K  L
Sbjct: 469 LKFARVTTRSKHIL 482